Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:12:20 (21496): wrapper (7.7.26015): starting
12:12:20 (21496): wrapper: running run_atlas (--nthreads 12)
[2025-12-15 12:12:20] Arguments: --nthreads 12
[2025-12-15 12:12:20] Threads: 12
[2025-12-15 12:12:20] Checking for CVMFS
[2025-12-15 12:12:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 12:12:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 12:12:21] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 12:12:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 12:12:21] 2.11.2.0 22587 29868 91700 154040 3 1 13799515 20275201 1 130560 0 10958291 99.905 1895203 41326 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-15 12:12:21] CVMFS is ok
[2025-12-15 12:12:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 12:12:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 12:12:21] Further information can be found at the LHC@home message board.
[2025-12-15 12:12:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 12:12:21] Checking for apptainer binary...
[2025-12-15 12:12:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 12:12:21] Running /usr/bin/apptainer --version
[2025-12-15 12:12:21] apptainer version 1.3.2-1.el7
[2025-12-15 12:12:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 12:12:22] c-205-13.aglt2.org
[2025-12-15 12:12:22] apptainer works
[2025-12-15 12:12:22] Set ATHENA_PROC_NUMBER=12
[2025-12-15 12:12:22] Set ATHENA_CORE_NUMBER=12
[2025-12-15 12:12:22] Starting ATLAS job with PandaID=6929524992
[2025-12-15 12:12:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 13:49:55]  *** The last 200 lines of the pilot log: ***
[2025-12-15 13:49:55] 2025-12-15 18:49:14,398 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-15 13:49:55] 2025-12-15 18:49:14,398 | INFO     | summary of transferred files:
[2025-12-15 13:49:55] 2025-12-15 18:49:14,398 | INFO     |  -- lfn=log.47898763._014095.job.log.tgz.1, status_code=0, status=transferred
[2025-12-15 13:49:55] 2025-12-15 18:49:14,399 | INFO     | stage-out finished correctly
[2025-12-15 13:49:55] 2025-12-15 18:49:16,094 | INFO     | time since job start (5797s) is within the limit (174528.0s)
[2025-12-15 13:49:55] 2025-12-15 18:49:16,293 | WARNING  | process 32013 can no longer be monitored (due to stat problems) - aborting
[2025-12-15 13:49:55] 2025-12-15 18:49:16,294 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929524992/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 13:49:55] 2025-12-15 18:49:16,295 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929524992/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 13:49:55] 2025-12-15 18:49:16,296 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-15 13:49:55] 2025-12-15 18:49:16,296 | WARNING  | maxPSS not found in memory monitor output
[2025-12-15 13:49:55] 2025-12-15 18:49:16,297 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4199431 B
[2025-12-15 13:49:55] 2025-12-15 18:49:16,297 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16325 B
[2025-12-15 13:49:55] 2025-12-15 18:49:16,297 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-15 13:49:55] 2025-12-15 18:49:16,315 | INFO     | sufficient remaining disk space (29321330688 B)
[2025-12-15 13:49:55] 2025-12-15 18:49:16,316 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-15 13:49:55] 2025-12-15 18:49:16,317 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6929524992: 4506804 B (within 2768240640 B limit)
[2025-12-15 13:49:55] 2025-12-15 18:49:16,317 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6929524992/HITS.47898763._014095.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-15 13:49:55] 2025-12-15 18:49:16,317 | INFO     | total size of present files: 0 B (workdir size: 4506804 B)
[2025-12-15 13:49:55] 2025-12-15 18:49:16,318 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6929524992/HITS.47898763._014095.pool.root.1 since it does not exist
[2025-12-15 13:49:55] 2025-12-15 18:49:16,410 | INFO     | number of running child processes to parent process 32013: 1
[2025-12-15 13:49:55] 2025-12-15 18:49:16,410 | INFO     | maximum number of monitored processes: 6
[2025-12-15 13:49:55] 2025-12-15 18:49:17,285 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-15 13:49:55] 2025-12-15 18:49:18,042 | INFO     | job 6929524992 has state=finished
[2025-12-15 13:49:55] 2025-12-15 18:49:18,042 | INFO     | preparing for final server update for job 6929524992 in state='finished'
[2025-12-15 13:49:55] 2025-12-15 18:49:18,043 | INFO     | this job has now completed (state=finished)
[2025-12-15 13:49:55] 2025-12-15 18:49:18,044 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-15 13:49:55] 2025-12-15 18:49:18,044 | INFO     | log transfer has been attempted: DONE
[2025-12-15 13:49:55] 2025-12-15 18:49:18,044 | INFO     | job 6929524992 has finished - writing final server update
[2025-12-15 13:49:55] 2025-12-15 18:49:18,045 | INFO     | total number of processed events: 400 (read)
[2025-12-15 13:49:55] 2025-12-15 18:49:18,046 | INFO     | executing command: lscpu
[2025-12-15 13:49:55] 2025-12-15 18:49:18,073 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-15 13:49:55] 2025-12-15 18:49:18,100 | INFO     | time since job start (5799s) is within the limit (174528.0s)
[2025-12-15 13:49:55] 2025-12-15 18:49:18,914 | INFO     | monitor loop #427: job 0:6929524992 is in state 'finished'
[2025-12-15 13:49:55] 2025-12-15 18:49:18,914 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 13:49:55] 2025-12-15 18:49:19,224 | INFO     | PID=25562 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-15 13:49:55] 2025-12-15 18:49:20,225 | INFO     | time since job start (5801s) is within the limit (174528.0s)
[2025-12-15 13:49:55] 2025-12-15 18:49:21,417 | INFO     | monitor loop #428: job 0:6929524992 is in state 'finished'
[2025-12-15 13:49:55] 2025-12-15 18:49:21,417 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 13:49:55] 2025-12-15 18:49:22,230 | INFO     | time since job start (5803s) is within the limit (174528.0s)
[2025-12-15 13:49:55] 2025-12-15 18:49:22,702 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-15 13:49:55] 2025-12-15 18:49:22,706 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-15 13:49:55] 2025-12-15 18:49:22,709 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929524992/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 13:49:55] 2025-12-15 18:49:22,710 | INFO     | extracted standard info from prmon json
[2025-12-15 13:49:55] 2025-12-15 18:49:22,710 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 13:49:55] 2025-12-15 18:49:22,710 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 13:49:55] 2025-12-15 18:49:22,711 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 13:49:55] 2025-12-15 18:49:22,711 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 13:49:55] 2025-12-15 18:49:22,713 | INFO     | fitting pss+swap vs Time
[2025-12-15 13:49:55] 2025-12-15 18:49:22,713 | INFO     | sum of square deviations: 211285822.0
[2025-12-15 13:49:55] 2025-12-15 18:49:22,713 | INFO     | sum of deviations: -1723739525.0
[2025-12-15 13:49:55] 2025-12-15 18:49:22,713 | INFO     | mean x: 1765821746.5
[2025-12-15 13:49:55] 2025-12-15 18:49:22,714 | INFO     | mean y: 2732082.340909091
[2025-12-15 13:49:55] 2025-12-15 18:49:22,714 | INFO     | intersect: 14408889153.053307
[2025-12-15 13:49:55] 2025-12-15 18:49:22,714 | INFO     | chi2: 0.013289289393600464
[2025-12-15 13:49:55] 2025-12-15 18:49:22,714 | INFO     | current memory leak: -8.16 B/s (using 88 data points, chi2=0.01)
[2025-12-15 13:49:55] 2025-12-15 18:49:22,714 | INFO     | could have reported an average CPU frequency of 2114 MHz (7 samples)
[2025-12-15 13:49:55] 2025-12-15 18:49:22,715 | INFO     | ..............................
[2025-12-15 13:49:55] 2025-12-15 18:49:22,715 | INFO     | . Timing measurements:
[2025-12-15 13:49:55] 2025-12-15 18:49:22,715 | INFO     | . get job = 0 s
[2025-12-15 13:49:55] 2025-12-15 18:49:22,715 | INFO     | . initial setup = 2 s
[2025-12-15 13:49:55] 2025-12-15 18:49:22,715 | INFO     | . payload setup = 7 s
[2025-12-15 13:49:55] 2025-12-15 18:49:22,715 | INFO     | . stage-in = 0 s
[2025-12-15 13:49:55] 2025-12-15 18:49:22,715 | INFO     | . payload execution = 5765 s
[2025-12-15 13:49:55] 2025-12-15 18:49:22,715 | INFO     | . stage-out = 0 s
[2025-12-15 13:49:55] 2025-12-15 18:49:22,715 | INFO     | . log creation = 0 s
[2025-12-15 13:49:55] 2025-12-15 18:49:22,715 | INFO     | ..............................
[2025-12-15 13:49:55] 2025-12-15 18:49:22,795 | INFO     | 
[2025-12-15 13:49:55] 2025-12-15 18:49:22,795 | INFO     | job summary report
[2025-12-15 13:49:55] 2025-12-15 18:49:22,796 | INFO     | --------------------------------------------------
[2025-12-15 13:49:55] 2025-12-15 18:49:22,796 | INFO     | PanDA job id: 6929524992
[2025-12-15 13:49:55] 2025-12-15 18:49:22,796 | INFO     | task id: 47898763
[2025-12-15 13:49:55] 2025-12-15 18:49:22,796 | INFO     | errors: (none)
[2025-12-15 13:49:55] 2025-12-15 18:49:22,796 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 13:49:55] 2025-12-15 18:49:22,796 | INFO     | pilot state: finished 
[2025-12-15 13:49:55] 2025-12-15 18:49:22,797 | INFO     | transexitcode: 0
[2025-12-15 13:49:55] 2025-12-15 18:49:22,797 | INFO     | exeerrorcode: 0
[2025-12-15 13:49:55] 2025-12-15 18:49:22,797 | INFO     | exeerrordiag: 
[2025-12-15 13:49:55] 2025-12-15 18:49:22,797 | INFO     | exitcode: 0
[2025-12-15 13:49:55] 2025-12-15 18:49:22,797 | INFO     | exitmsg: OK
[2025-12-15 13:49:55] 2025-12-15 18:49:22,797 | INFO     | cpuconsumptiontime: 64600 s
[2025-12-15 13:49:55] 2025-12-15 18:49:22,797 | INFO     | nevents: 400
[2025-12-15 13:49:55] 2025-12-15 18:49:22,798 | INFO     | neventsw: 0
[2025-12-15 13:49:55] 2025-12-15 18:49:22,798 | INFO     | pid: 32013
[2025-12-15 13:49:55] 2025-12-15 18:49:22,798 | INFO     | pgrp: 32013
[2025-12-15 13:49:55] 2025-12-15 18:49:22,798 | INFO     | corecount: 12
[2025-12-15 13:49:55] 2025-12-15 18:49:22,798 | INFO     | event service: False
[2025-12-15 13:49:55] 2025-12-15 18:49:22,798 | INFO     | sizes: {0: 2283958, 5: 2284220, 11: 2284276, 5776: 2310943, 5779: 2319941, 5781: 2320025, 5787: 2320347}
[2025-12-15 13:49:55] 2025-12-15 18:49:22,799 | INFO     | --------------------------------------------------
[2025-12-15 13:49:55] 2025-12-15 18:49:22,799 | INFO     | 
[2025-12-15 13:49:55] 2025-12-15 18:49:22,799 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-15 13:49:55] 2025-12-15 18:49:22,822 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,822 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,823 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,823 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,823 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,823 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,823 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,823 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,824 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,824 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,824 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,824 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,824 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,825 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,825 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,825 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,825 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,825 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 13:49:55] 2025-12-15 18:49:22,825 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,826 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 13:49:55] 2025-12-15 18:49:22,826 | INFO     | job 6929524992 has completed (purged errors)
[2025-12-15 13:49:55] 2025-12-15 18:49:22,826 | INFO     | overall cleanup function is called
[2025-12-15 13:49:55] 2025-12-15 18:49:23,834 | INFO     | --- collectZombieJob: --- 10, [32013]
[2025-12-15 13:49:55] 2025-12-15 18:49:23,834 | INFO     | zombie collector waiting for pid 32013
[2025-12-15 13:49:55] 2025-12-15 18:49:23,834 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 13:49:55] 2025-12-15 18:49:23,834 | INFO     | collected zombie processes
[2025-12-15 13:49:55] 2025-12-15 18:49:23,834 | INFO     | will attempt to kill all subprocesses of pid=32013
[2025-12-15 13:49:55] 2025-12-15 18:49:23,927 | INFO     | process IDs to be killed: [32013] (in reverse order)
[2025-12-15 13:49:55] 2025-12-15 18:49:23,980 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 13:49:55] 2025-12-15 18:49:23,981 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 13:49:55] 2025-12-15 18:49:23,985 | INFO     | did not find any defunct processes belonging to 32013
[2025-12-15 13:49:55] 2025-12-15 18:49:23,988 | INFO     | did not find any defunct processes belonging to 32013
[2025-12-15 13:49:55] 2025-12-15 18:49:23,988 | INFO     | ready for new job
[2025-12-15 13:49:55] 2025-12-15 18:49:23,989 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 13:49:55] 2025-12-15 18:49:23,990 | INFO     | ***************************************
[2025-12-15 13:49:55] 2025-12-15 18:49:23,990 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 13:49:55] 2025-12-15 18:49:23,991 | INFO     | ***************************************
[2025-12-15 13:49:55] 2025-12-15 18:49:23,991 | INFO     | 
[2025-12-15 13:49:55] 2025-12-15 18:49:23,991 | INFO     | architecture information:
[2025-12-15 13:49:55] 2025-12-15 18:49:23,992 | INFO     | executing command: cat /etc/os-release
[2025-12-15 13:49:55] 2025-12-15 18:49:24,006 | INFO     | cat /etc/os-release:
[2025-12-15 13:49:55] NAME="CentOS Linux"
[2025-12-15 13:49:55] VERSION="7 (Core)"
[2025-12-15 13:49:55] ID="centos"
[2025-12-15 13:49:55] ID_LIKE="rhel fedora"
[2025-12-15 13:49:55] VERSION_ID="7"
[2025-12-15 13:49:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 13:49:55] ANSI_COLOR="0;31"
[2025-12-15 13:49:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 13:49:55] HOME_URL="https://www.centos.org/"
[2025-12-15 13:49:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 13:49:55] 
[2025-12-15 13:49:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 13:49:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 13:49:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 13:49:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 13:49:55] 
[2025-12-15 13:49:55] 2025-12-15 18:49:24,006 | INFO     | ***************************************
[2025-12-15 13:49:55] 2025-12-15 18:49:24,509 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-15 13:49:55] 2025-12-15 18:49:24,525 | INFO     | sufficient remaining disk space (29326573568 B)
[2025-12-15 13:49:55] 2025-12-15 18:49:24,525 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 13:49:55] 2025-12-15 18:49:24,525 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 13:49:55] 2025-12-15 18:49:24,526 | INFO     | update_server=False
[2025-12-15 13:49:55] 2025-12-15 18:49:24,526 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 13:49:55] 2025-12-15 18:49:24,526 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 13:49:55] 2025-12-15 18:49:24,602 | INFO     | all job control threads have been joined
[2025-12-15 13:49:55] 2025-12-15 18:49:24,925 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 13:49:55] 2025-12-15 18:49:24,925 | INFO     | aborting loop
[2025-12-15 13:49:55] 2025-12-15 18:49:24,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 13:49:55] 2025-12-15 18:49:25,531 | INFO     | [job] retrieve thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:25,532 | INFO     | [job] queue monitor thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:25,601 | INFO     | all data control threads have been joined
[2025-12-15 13:49:55] 2025-12-15 18:49:25,607 | INFO     | [job] control thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:25,637 | INFO     | [payload] failed_post thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:25,679 | INFO     | all payload control threads have been joined
[2025-12-15 13:49:55] 2025-12-15 18:49:25,846 | INFO     | [data] copytool_in thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:25,930 | INFO     | [job] job monitor thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:26,245 | INFO     | [payload] validate_post thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:26,266 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:26,333 | INFO     | [job] validate thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:26,365 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:26,606 | INFO     | [data] control thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:26,685 | INFO     | [payload] control thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:26,806 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:26,809 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:27,003 | INFO     | [data] copytool_out thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:27,878 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 13:49:55] 2025-12-15 18:49:31,884 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 13:49:55] 2025-12-15 18:49:48,060 | INFO     | [monitor] cgroup control has ended
[2025-12-15 13:49:55] 2025-12-15 18:49:49,781 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139723123083072)>', '<ExcThread(monitor, started 139722374498048)>']
[2025-12-15 13:49:55] 2025-12-15 18:49:54,807 | INFO     | all workflow threads have been joined
[2025-12-15 13:49:55] 2025-12-15 18:49:54,807 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 13:49:55] 2025-12-15 18:49:54,807 | INFO     | traces error code: 0
[2025-12-15 13:49:55] 2025-12-15 18:49:54,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 13:49:55] 2025-12-15 18:49:55,427 | INFO     | PID=25562 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-15 13:49:55] 2025-12-15 18:49:55,427 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 13:49:55] 2025-12-15 18:49:55,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 13:49:55] 2025-12-15 18:49:55,428 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 13:49:55] 2025-12-15 18:49:55,428 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 13:49:55] 2025-12-15 18:49:55,428 | INFO     | [monitor] control thread has ended
[2025-12-15 13:49:55] 2025-12-15 18:49:55,518 [wrapper] ==== pilot stdout END ====
[2025-12-15 13:49:55] 2025-12-15 18:49:55,521 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 13:49:55] 2025-12-15 18:49:55,525 [wrapper] pilotpid: 25562
[2025-12-15 13:49:55] 2025-12-15 18:49:55,528 [wrapper] Pilot exit status: 0
[2025-12-15 13:49:55] 2025-12-15 18:49:55,543 [wrapper] pandaids: 6929524992
[2025-12-15 13:49:55] 2025-12-15 18:49:55,584 [wrapper] cleanup supervisor_pilot 31956 25563
[2025-12-15 13:49:55] 2025-12-15 18:49:55,588 [wrapper] Test setup, not cleaning
[2025-12-15 13:49:55] 2025-12-15 18:49:55,592 [wrapper] apfmon messages muted
[2025-12-15 13:49:55] 2025-12-15 18:49:55,596 [wrapper] ==== wrapper stdout END ====
[2025-12-15 13:49:55] 2025-12-15 18:49:55,600 [wrapper] ==== wrapper stderr END ====
[2025-12-15 13:49:55]  *** Error codes and diagnostics ***
[2025-12-15 13:49:55]     "exeErrorCode": 0,
[2025-12-15 13:49:55]     "exeErrorDiag": "",
[2025-12-15 13:49:55]     "pilotErrorCode": 0,
[2025-12-15 13:49:55]     "pilotErrorDiag": "",
[2025-12-15 13:49:55]  *** Listing of results directory ***
[2025-12-15 13:49:55] total 432872
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas    579449 Dec 15 00:25 pilot3.tar.gz
[2025-12-15 13:49:55] -rwx------ 1 boincer umatlas     36322 Dec 15 00:26 runpilot2-wrapper.sh
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas      5112 Dec 15 00:27 queuedata.json
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas       100 Dec 15 12:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 13:49:55] -rwxr-xr-x 1 boincer umatlas      7986 Dec 15 12:12 run_atlas
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas       105 Dec 15 12:12 job.xml
[2025-12-15 13:49:55] -rw-r--r-- 2 boincer umatlas 222785262 Dec 15 12:12 EVNT.47898761._000614.pool.root.1
[2025-12-15 13:49:55] drwxrwx--x 2 boincer umatlas      4096 Dec 15 12:12 shared
[2025-12-15 13:49:55] -rw-r--r-- 2 boincer umatlas    592399 Dec 15 12:12 input.tar.gz
[2025-12-15 13:49:55] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 12:12 start_atlas.sh
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas         0 Dec 15 12:12 boinc_lockfile
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas      2508 Dec 15 12:12 pandaJob.out
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas        57 Dec 15 12:12 setup.sh.local
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas    994465 Dec 15 12:12 agis_schedconf.cvmfs.json
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas   1516240 Dec 15 12:12 agis_ddmendpoints.agis.ALL.json
[2025-12-15 13:49:55] drwx------ 5 boincer umatlas      4096 Dec 15 12:12 pilot3
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas 214108913 Dec 15 13:48 HITS.47898763._014095.pool.root.1
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas        95 Dec 15 13:48 pilot_heartbeat.json
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas      1047 Dec 15 13:49 memory_monitor_summary.json
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas       529 Dec 15 13:49 boinc_task_state.xml
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas    400457 Dec 15 13:49 log.47898763._014095.job.log.tgz.1
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas      7851 Dec 15 13:49 heartbeat.json
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas      5953 Dec 15 13:49 init_data.xml
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas      8192 Dec 15 13:49 boinc_mmap_file
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas        27 Dec 15 13:49 wrapper_checkpoint.txt
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas       745 Dec 15 13:49 pilotlog.txt
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas    825951 Dec 15 13:49 log.47898763._014095.job.log.1
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas       357 Dec 15 13:49 output.list
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas       620 Dec 15 13:49 runtime_log
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas   1249280 Dec 15 13:49 result.tar.gz
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas       660 Dec 15 13:49 SNhKDmoHGp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4uSKDmDDj9rn.diag
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas      9344 Dec 15 13:49 runtime_log.err
[2025-12-15 13:49:55] -rw-r--r-- 1 boincer umatlas     22609 Dec 15 13:49 stderr.txt
[2025-12-15 13:49:55] HITS file was successfully produced:
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas 214108913 Dec 15 13:48 shared/HITS.pool.root.1
[2025-12-15 13:49:55]  *** Contents of shared directory: ***
[2025-12-15 13:49:55] total 428476
[2025-12-15 13:49:55] -rw-r--r-- 2 boincer umatlas 222785262 Dec 15 12:12 ATLAS.root_0
[2025-12-15 13:49:55] -rw-r--r-- 2 boincer umatlas    592399 Dec 15 12:12 input.tar.gz
[2025-12-15 13:49:55] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 12:12 start_atlas.sh
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas 214108913 Dec 15 13:48 HITS.pool.root.1
[2025-12-15 13:49:55] -rw------- 1 boincer umatlas   1249280 Dec 15 13:49 result.tar.gz
13:49:57 (21496): run_atlas exited; CPU time 64587.230811
13:49:57 (21496): called boinc_finish(0)

</stderr_txt>
]]>

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