Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:14:19 (2064040): wrapper (7.7.26015): starting
18:14:19 (2064040): wrapper: running run_atlas (--nthreads 4)
[2025-12-15 18:14:19] Arguments: --nthreads 4
[2025-12-15 18:14:19] Threads: 4
[2025-12-15 18:14:19] Checking for CVMFS
[2025-12-15 18:14:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 18:14:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 18:14:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 18:14:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 18:14:20] 2.9.2.0 1899997 44 58916 154040 0 16 19437412 36864001 0 130560 0 433957 99.998 1422 308 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 18:14:20] CVMFS is ok
[2025-12-15 18:14:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 18:14:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 18:14:20] Further information can be found at the LHC@home message board.
[2025-12-15 18:14:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 18:14:20] Checking for apptainer binary...
[2025-12-15 18:14:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 18:14:20] Running /usr/bin/apptainer --version
[2025-12-15 18:14:20] apptainer version 1.4.1-1.1
[2025-12-15 18:14:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 18:14:20] thA325
[2025-12-15 18:14:20] apptainer works
[2025-12-15 18:14:20] Set ATHENA_PROC_NUMBER=4
[2025-12-15 18:14:20] Set ATHENA_CORE_NUMBER=4
[2025-12-15 18:14:20] Starting ATLAS job with PandaID=6931151512
[2025-12-15 18:14:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 18:18:45]  *** The last 200 lines of the pilot log: ***
[2025-12-15 18:18:45] 2025-12-15 17:17:51,461 | INFO     | all data control threads have been joined
[2025-12-15 18:18:45] 2025-12-15 17:17:51,922 | INFO     | [job] retrieve thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:51,922 | INFO     | [job] queue monitor thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:51,922 | INFO     | [job] job monitor thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:51,933 | INFO     | [data] copytool_in thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:52,105 | INFO     | all payload control threads have been joined
[2025-12-15 18:18:45] 2025-12-15 17:17:52,226 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 18:18:45] 2025-12-15 17:17:52,274 | INFO     | all job control threads have been joined
[2025-12-15 18:18:45] 2025-12-15 17:17:52,376 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:52,457 | INFO     | [payload] validate_post thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:52,467 | INFO     | [data] control thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:52,707 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:53,037 | INFO     | [job] validate thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:53,111 | INFO     | [payload] control thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:53,138 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:53,187 | INFO     | [payload] failed_post thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:53,229 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:53,280 | INFO     | [job] control thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:53,446 | INFO     | [data] copytool_out thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:17:56,233 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 18:18:45] 2025-12-15 17:18:39,260 | INFO     | [monitor] cgroup control has ended
[2025-12-15 18:18:45] 2025-12-15 17:18:40,266 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140090424305472)>', '<ExcThread(monitor, started 140089770350336)>']
[2025-12-15 18:18:45] 2025-12-15 17:18:41,184 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 18:18:45] 2025-12-15 17:18:41,185 | INFO     | [monitor] control thread has ended
[2025-12-15 18:18:45] 2025-12-15 17:18:45,292 | INFO     | all workflow threads have been joined
[2025-12-15 18:18:45] 2025-12-15 17:18:45,292 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 18:18:45] 2025-12-15 17:18:45,293 | INFO     | traces error code: 0
[2025-12-15 18:18:45] 2025-12-15 17:18:45,293 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 18:18:45] 2025-12-15 17:18:45,359 [wrapper] ==== pilot stdout END ====
[2025-12-15 18:18:45] 2025-12-15 17:18:45,363 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 18:18:45] 2025-12-15 17:18:45,367 [wrapper] pilotpid: 2067825
[2025-12-15 18:18:45] 2025-12-15 17:18:45,371 [wrapper] Pilot exit status: 0
[2025-12-15 18:18:45] 2025-12-15 17:18:45,382 [wrapper] pandaids: 6931151512
[2025-12-15 18:18:45] 2025-12-15 17:18:45,403 [wrapper] cleanup supervisor_pilot 2067831 2067826
[2025-12-15 18:18:45] 2025-12-15 17:18:45,406 [wrapper] Test setup, not cleaning
[2025-12-15 18:18:45] 2025-12-15 17:18:45,409 [wrapper] apfmon messages muted
[2025-12-15 18:18:45] 2025-12-15 17:18:45,413 [wrapper] ==== wrapper stdout END ====
[2025-12-15 18:18:45] 2025-12-15 17:18:45,416 [wrapper] ==== wrapper stderr END ====
[2025-12-15 18:18:45]  *** Error codes and diagnostics ***
[2025-12-15 18:18:45]     "exeErrorCode": 65,
[2025-12-15 18:18:45]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-15 18:18:45]     "pilotErrorCode": 1305,
[2025-12-15 18:18:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-15 18:18:45]  *** Listing of results directory ***
[2025-12-15 18:18:45] total 198056
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc    579449 Dec 15 02:16 pilot3.tar.gz
[2025-12-15 18:18:45] -rwx------ 1 boinc boinc     36322 Dec 15 02:17 runpilot2-wrapper.sh
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc      5112 Dec 15 02:19 queuedata.json
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc       100 Dec 15 18:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 18:18:45] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 18:14 run_atlas
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc       105 Dec 15 18:14 job.xml
[2025-12-15 18:18:45] -rw-r--r-- 2 boinc boinc 198667286 Dec 15 18:14 EVNT.47898894._000057.pool.root.1
[2025-12-15 18:18:45] drwxrwx--x 2 boinc boinc      4096 Dec 15 18:14 shared
[2025-12-15 18:18:45] -rw-r--r-- 2 boinc boinc    592398 Dec 15 18:14 input.tar.gz
[2025-12-15 18:18:45] -rw-r--r-- 2 boinc boinc     15847 Dec 15 18:14 start_atlas.sh
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc         0 Dec 15 18:14 boinc_setup_complete
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc      6368 Dec 15 18:14 init_data.xml
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc         0 Dec 15 18:14 boinc_lockfile
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc      2505 Dec 15 18:14 pandaJob.out
[2025-12-15 18:18:45] -rw------- 1 boinc boinc    994473 Dec 15 18:14 agis_schedconf.cvmfs.json
[2025-12-15 18:18:45] -rw------- 1 boinc boinc   1516240 Dec 15 18:14 agis_ddmendpoints.agis.ALL.json
[2025-12-15 18:18:45] drwx------ 5 boinc boinc      4096 Dec 15 18:14 pilot3
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc       522 Dec 15 18:15 boinc_task_state.xml
[2025-12-15 18:18:45] -rw------- 1 boinc boinc       973 Dec 15 18:15 memory_monitor_summary.json
[2025-12-15 18:18:45] -rw------- 1 boinc boinc     34060 Dec 15 18:15 log.47898896._001414.job.log.tgz.1
[2025-12-15 18:18:45] -rw------- 1 boinc boinc        95 Dec 15 18:17 pilot_heartbeat.json
[2025-12-15 18:18:45] -rw------- 1 boinc boinc      8397 Dec 15 18:17 heartbeat.json
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc        22 Dec 15 18:18 wrapper_checkpoint.txt
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc      8192 Dec 15 18:18 boinc_mmap_file
[2025-12-15 18:18:45] -rw------- 1 boinc boinc      4556 Dec 15 18:18 pilotlog.txt
[2025-12-15 18:18:45] -rw------- 1 boinc boinc     85750 Dec 15 18:18 log.47898896._001414.job.log.1
[2025-12-15 18:18:45] -rw------- 1 boinc boinc       188 Dec 15 18:18 output.list
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc       620 Dec 15 18:18 runtime_log
[2025-12-15 18:18:45] -rw------- 1 boinc boinc    143360 Dec 15 18:18 result.tar.gz
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc      8744 Dec 15 18:18 runtime_log.err
[2025-12-15 18:18:45] -rw------- 1 boinc boinc       648 Dec 15 18:18 IybNDmnOCp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEpWKDmVeH6Lm.diag
[2025-12-15 18:18:45] -rw-r--r-- 1 boinc boinc      6398 Dec 15 18:18 stderr.txt
[2025-12-15 18:18:45] No HITS result produced
[2025-12-15 18:18:45]  *** Contents of shared directory: ***
[2025-12-15 18:18:45] total 194752
[2025-12-15 18:18:45] -rw-r--r-- 2 boinc boinc 198667286 Dec 15 18:14 ATLAS.root_0
[2025-12-15 18:18:45] -rw-r--r-- 2 boinc boinc    592398 Dec 15 18:14 input.tar.gz
[2025-12-15 18:18:45] -rw-r--r-- 2 boinc boinc     15847 Dec 15 18:14 start_atlas.sh
[2025-12-15 18:18:45] -rw------- 1 boinc boinc    143360 Dec 15 18:18 result.tar.gz
18:18:47 (2064040): run_atlas exited; CPU time 28.316653
18:18:47 (2064040): called boinc_finish(0)

</stderr_txt>
]]>

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