Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:40:39 (1941317): wrapper (7.7.26015): starting
17:40:39 (1941317): wrapper: running run_atlas (--nthreads 4)
[2025-12-15 17:40:39] Arguments: --nthreads 4
[2025-12-15 17:40:39] Threads: 4
[2025-12-15 17:40:39] Checking for CVMFS
[2025-12-15 17:40:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 17:40:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 17:40:39] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 17:40:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 17:40:39] 2.9.2.0 1899997 10 52628 154039 1 186 19434415 36864001 0 130560 0 108489 99.994 81 98 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 17:40:39] CVMFS is ok
[2025-12-15 17:40:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 17:40:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 17:40:39] Further information can be found at the LHC@home message board.
[2025-12-15 17:40:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 17:40:39] Checking for apptainer binary...
[2025-12-15 17:40:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 17:40:39] Running /usr/bin/apptainer --version
[2025-12-15 17:40:39] apptainer version 1.4.1-1.1
[2025-12-15 17:40:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 17:40:40] thA325
[2025-12-15 17:40:40] apptainer works
[2025-12-15 17:40:40] Set ATHENA_PROC_NUMBER=4
[2025-12-15 17:40:40] Set ATHENA_CORE_NUMBER=4
[2025-12-15 17:40:40] Starting ATLAS job with PandaID=6929525559
[2025-12-15 17:40:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 17:44:53]  *** The last 200 lines of the pilot log: ***
[2025-12-15 17:44:53] 2025-12-15 16:43:52,152 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 17:44:53] 2025-12-15 16:43:52,169 | INFO     | sufficient remaining disk space (241861394432 B)
[2025-12-15 17:44:53] 2025-12-15 16:43:52,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 17:44:53] 2025-12-15 16:43:52,169 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 17:44:53] 2025-12-15 16:43:52,169 | INFO     | update_server=False
[2025-12-15 17:44:53] 2025-12-15 16:43:52,169 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 17:44:53] 2025-12-15 16:43:52,170 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 17:44:53] 2025-12-15 16:43:52,170 | INFO     | aborting loop
[2025-12-15 17:44:53] 2025-12-15 16:43:52,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 17:44:53] 2025-12-15 16:43:52,775 | INFO     | all data control threads have been joined
[2025-12-15 17:44:53] 2025-12-15 16:43:52,801 | INFO     | all job control threads have been joined
[2025-12-15 17:44:53] 2025-12-15 16:43:52,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 17:44:53] 2025-12-15 16:43:52,998 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 17:44:53] 2025-12-15 16:43:53,175 | INFO     | [job] retrieve thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:53,176 | INFO     | [job] job monitor thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:53,176 | INFO     | [job] queue monitor thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:53,179 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:53,254 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:53,497 | INFO     | [payload] validate_post thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:53,500 | INFO     | [data] copytool_in thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:53,602 | INFO     | all payload control threads have been joined
[2025-12-15 17:44:53] 2025-12-15 16:43:53,781 | INFO     | [data] control thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:53,807 | INFO     | [job] control thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:53,880 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:54,166 | INFO     | [payload] failed_post thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:54,346 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:54,574 | INFO     | [job] validate thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:54,608 | INFO     | [payload] control thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:55,004 | INFO     | [data] copytool_out thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:43:56,986 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 17:44:53] 2025-12-15 16:44:23,194 | INFO     | PID=1945106 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 17:44:53] 2025-12-15 16:44:23,194 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 17:44:53] 2025-12-15 16:44:23,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 17:44:53] 2025-12-15 16:44:23,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 17:44:53] 2025-12-15 16:44:48,302 | INFO     | [monitor] cgroup control has ended
[2025-12-15 17:44:53] 2025-12-15 16:44:48,363 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140115023845184)>', '<ExcThread(monitor, started 140114147653376)>']
[2025-12-15 17:44:53] 2025-12-15 16:44:49,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 17:44:53] 2025-12-15 16:44:49,334 | INFO     | [monitor] control thread has ended
[2025-12-15 17:44:53] 2025-12-15 16:44:53,389 | INFO     | all workflow threads have been joined
[2025-12-15 17:44:53] 2025-12-15 16:44:53,389 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 17:44:53] 2025-12-15 16:44:53,389 | INFO     | traces error code: 0
[2025-12-15 17:44:53] 2025-12-15 16:44:53,389 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 17:44:53] 2025-12-15 16:44:53,456 [wrapper] ==== pilot stdout END ====
[2025-12-15 17:44:53] 2025-12-15 16:44:53,459 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 17:44:53] 2025-12-15 16:44:53,463 [wrapper] pilotpid: 1945106
[2025-12-15 17:44:53] 2025-12-15 16:44:53,467 [wrapper] Pilot exit status: 0
[2025-12-15 17:44:53] 2025-12-15 16:44:53,477 [wrapper] pandaids: 6929525559
[2025-12-15 17:44:53] 2025-12-15 16:44:53,499 [wrapper] cleanup supervisor_pilot 1945112 1945107
[2025-12-15 17:44:53] 2025-12-15 16:44:53,503 [wrapper] Test setup, not cleaning
[2025-12-15 17:44:53] 2025-12-15 16:44:53,506 [wrapper] apfmon messages muted
[2025-12-15 17:44:53] 2025-12-15 16:44:53,510 [wrapper] ==== wrapper stdout END ====
[2025-12-15 17:44:53] 2025-12-15 16:44:53,513 [wrapper] ==== wrapper stderr END ====
[2025-12-15 17:44:53]  *** Error codes and diagnostics ***
[2025-12-15 17:44:53]     "exeErrorCode": 65,
[2025-12-15 17:44:53]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-15 17:44:53]     "pilotErrorCode": 1305,
[2025-12-15 17:44:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-15 17:44:53]  *** Listing of results directory ***
[2025-12-15 17:44:53] total 223164
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc    579449 Dec 15 06:25 pilot3.tar.gz
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc      5112 Dec 15 06:25 queuedata.json
[2025-12-15 17:44:53] -rwx------ 1 boinc boinc     36322 Dec 15 06:25 runpilot2-wrapper.sh
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc       100 Dec 15 17:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 17:44:53] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 17:40 run_atlas
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc       105 Dec 15 17:40 job.xml
[2025-12-15 17:44:53] -rw-r--r-- 2 boinc boinc 224375267 Dec 15 17:40 EVNT.47898761._000621.pool.root.1
[2025-12-15 17:44:53] -rw-r--r-- 2 boinc boinc    592403 Dec 15 17:40 input.tar.gz
[2025-12-15 17:44:53] -rw-r--r-- 2 boinc boinc     15847 Dec 15 17:40 start_atlas.sh
[2025-12-15 17:44:53] drwxrwx--x 2 boinc boinc      4096 Dec 15 17:40 shared
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc         0 Dec 15 17:40 boinc_setup_complete
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc      6368 Dec 15 17:40 init_data.xml
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc         0 Dec 15 17:40 boinc_lockfile
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc      2508 Dec 15 17:40 pandaJob.out
[2025-12-15 17:44:53] -rw------- 1 boinc boinc    994465 Dec 15 17:40 agis_schedconf.cvmfs.json
[2025-12-15 17:44:53] -rw------- 1 boinc boinc   1516240 Dec 15 17:40 agis_ddmendpoints.agis.ALL.json
[2025-12-15 17:44:53] drwx------ 5 boinc boinc      4096 Dec 15 17:40 pilot3
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc       523 Dec 15 17:41 boinc_task_state.xml
[2025-12-15 17:44:53] -rw------- 1 boinc boinc       954 Dec 15 17:41 memory_monitor_summary.json
[2025-12-15 17:44:53] -rw------- 1 boinc boinc     33939 Dec 15 17:41 log.47898763._014280.job.log.tgz.1
[2025-12-15 17:44:53] -rw------- 1 boinc boinc        95 Dec 15 17:43 pilot_heartbeat.json
[2025-12-15 17:44:53] -rw------- 1 boinc boinc      8359 Dec 15 17:43 heartbeat.json
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc      8192 Dec 15 17:44 boinc_mmap_file
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc        23 Dec 15 17:44 wrapper_checkpoint.txt
[2025-12-15 17:44:53] -rw------- 1 boinc boinc      4752 Dec 15 17:44 pilotlog.txt
[2025-12-15 17:44:53] -rw------- 1 boinc boinc     84966 Dec 15 17:44 log.47898763._014280.job.log.1
[2025-12-15 17:44:53] -rw------- 1 boinc boinc       188 Dec 15 17:44 output.list
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc       620 Dec 15 17:44 runtime_log
[2025-12-15 17:44:53] -rw------- 1 boinc boinc    143360 Dec 15 17:44 result.tar.gz
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc      8744 Dec 15 17:44 runtime_log.err
[2025-12-15 17:44:53] -rw------- 1 boinc boinc       648 Dec 15 17:44 hHmMDmkGGp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgEXKDmw3kWWo.diag
[2025-12-15 17:44:53] -rw-r--r-- 1 boinc boinc      8077 Dec 15 17:44 stderr.txt
[2025-12-15 17:44:53] No HITS result produced
[2025-12-15 17:44:53]  *** Contents of shared directory: ***
[2025-12-15 17:44:53] total 219860
[2025-12-15 17:44:53] -rw-r--r-- 2 boinc boinc 224375267 Dec 15 17:40 ATLAS.root_0
[2025-12-15 17:44:53] -rw-r--r-- 2 boinc boinc    592403 Dec 15 17:40 input.tar.gz
[2025-12-15 17:44:53] -rw-r--r-- 2 boinc boinc     15847 Dec 15 17:40 start_atlas.sh
[2025-12-15 17:44:53] -rw------- 1 boinc boinc    143360 Dec 15 17:44 result.tar.gz
17:44:55 (1941317): run_atlas exited; CPU time 28.292327
17:44:55 (1941317): called boinc_finish(0)

</stderr_txt>
]]>

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