Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:34:00 (3949656): wrapper (7.7.26015): starting
05:34:00 (3949656): wrapper: running run_atlas (--nthreads 2)
[2025-12-16 05:34:00] Arguments: --nthreads 2
[2025-12-16 05:34:00] Threads: 2
[2025-12-16 05:34:00] Checking for CVMFS
[2025-12-16 05:34:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 05:34:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 05:34:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 05:34:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 05:34:01] 2.9.2.0 3022499 4053 61888 154058 3 57 35565714 36864000 0 130560 0 2125100 99.987 143407 6231 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-16 05:34:01] CVMFS is ok
[2025-12-16 05:34:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 05:34:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 05:34:01] Further information can be found at the LHC@home message board.
[2025-12-16 05:34:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 05:34:01] Checking for apptainer binary...
[2025-12-16 05:34:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-16 05:34:01] Running /usr/bin/apptainer --version
[2025-12-16 05:34:01] apptainer version 1.4.1-1.1
[2025-12-16 05:34:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 05:34:01] legendA165
[2025-12-16 05:34:01] apptainer works
[2025-12-16 05:34:01] Set ATHENA_PROC_NUMBER=2
[2025-12-16 05:34:01] Set ATHENA_CORE_NUMBER=2
[2025-12-16 05:34:01] Starting ATLAS job with PandaID=6931596160
[2025-12-16 05:34:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 07:36:43]  *** The last 200 lines of the pilot log: ***
[2025-12-16 07:36:43] 2025-12-16 06:36:05,862 | INFO     | time since job start (7311s) is within the limit (174528.0s)
[2025-12-16 07:36:43] 2025-12-16 06:36:07,096 | WARNING  | process 3959783 can no longer be monitored (due to stat problems) - aborting
[2025-12-16 07:36:43] 2025-12-16 06:36:07,096 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6931596160/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 07:36:43] 2025-12-16 06:36:07,144 | INFO     | number of running child processes to parent process 3959783: 1
[2025-12-16 07:36:43] 2025-12-16 06:36:07,144 | INFO     | maximum number of monitored processes: 6
[2025-12-16 07:36:43] 2025-12-16 06:36:07,869 | INFO     | time since job start (7313s) is within the limit (174528.0s)
[2025-12-16 07:36:43] 2025-12-16 06:36:09,649 | INFO     | monitor loop #561: job 0:6931596160 is in state 'finished'
[2025-12-16 07:36:43] 2025-12-16 06:36:09,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 07:36:43] 2025-12-16 06:36:09,875 | INFO     | time since job start (7315s) is within the limit (174528.0s)
[2025-12-16 07:36:43] 2025-12-16 06:36:11,768 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 07:36:43] 2025-12-16 06:36:11,769 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 4600.22225
[2025-12-16 07:36:43] 2025-12-16 06:36:11,769 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6931596160/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 07:36:43] 2025-12-16 06:36:11,770 | INFO     | extracted standard info from prmon json
[2025-12-16 07:36:43] 2025-12-16 06:36:11,770 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 07:36:43] 2025-12-16 06:36:11,770 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 07:36:43] 2025-12-16 06:36:11,770 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 07:36:43] 2025-12-16 06:36:11,770 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 07:36:43] 2025-12-16 06:36:11,771 | INFO     | fitting pss+swap vs Time
[2025-12-16 07:36:43] 2025-12-16 06:36:11,771 | INFO     | sum of square deviations: 535786790.0
[2025-12-16 07:36:43] 2025-12-16 06:36:11,771 | INFO     | sum of deviations: -10873348088.0
[2025-12-16 07:36:43] 2025-12-16 06:36:11,771 | INFO     | mean x: 1765863309.5
[2025-12-16 07:36:43] 2025-12-16 06:36:11,771 | INFO     | mean y: 2367698.716666667
[2025-12-16 07:36:43] 2025-12-16 06:36:11,771 | INFO     | intersect: 35839097529.291954
[2025-12-16 07:36:43] 2025-12-16 06:36:11,771 | INFO     | chi2: 1.6141996939958752
[2025-12-16 07:36:43] 2025-12-16 06:36:11,771 | INFO     | sum of square deviations: 471562330.0
[2025-12-16 07:36:43] 2025-12-16 06:36:11,771 | INFO     | sum of deviations: -9877591530.000004
[2025-12-16 07:36:43] 2025-12-16 06:36:11,771 | INFO     | mean x: 1765863157.0
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | mean y: 2370064.460869565
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | intersect: 36991064565.82671
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | chi2: 1.6120017363642942
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | current chi2=1.6120017363642942 (change=0.13616392319713472 %)
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | right removable region: 114
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | sum of square deviations: 471562330.0
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | sum of deviations: -25332681887.000004
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | mean x: 1765863462.0
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | mean y: 2401135.113043478
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | intersect: 94865910140.85257
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | chi2: 0.1526099581067784
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | current chi2=0.1526099581067784 (change=90.54578199497736 %)
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | sum of square deviations: 412686807.5
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | sum of deviations: -20481344750.000004
[2025-12-16 07:36:43] 2025-12-16 06:36:11,772 | INFO     | mean x: 1765863614.5
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | mean y: 2388556.4545454546
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | intersect: 87640909615.92798
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | chi2: 0.14346885880906401
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | current chi2=0.14346885880906401 (change=5.989844575750774 %)
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | left removable region: 20
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | sum of square deviations: 257521107.5
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | sum of deviations: -9388224489.5
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | mean x: 1765863736.5
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | mean y: 2360746.64893617
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | intersect: 64378929087.282036
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | chi2: 0.08337514090206391
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | current memory leak: -36.46 B/s (using 94 data points, chi2=0.08)
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | could have reported an average CPU frequency of 4574 MHz (8 samples)
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | ..............................
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | . Timing measurements:
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | . get job = 0 s
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | . initial setup = 1 s
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | . payload setup = 6 s
[2025-12-16 07:36:43] 2025-12-16 06:36:11,773 | INFO     | . stage-in = 0 s
[2025-12-16 07:36:43] 2025-12-16 06:36:11,774 | INFO     | . payload execution = 7281 s
[2025-12-16 07:36:43] 2025-12-16 06:36:11,774 | INFO     | . stage-out = 0 s
[2025-12-16 07:36:43] 2025-12-16 06:36:11,774 | INFO     | . log creation = 0 s
[2025-12-16 07:36:43] 2025-12-16 06:36:11,774 | INFO     | ..............................
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | 
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | job summary report
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | --------------------------------------------------
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | PanDA job id: 6931596160
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | task id: 47899050
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | errors: (none)
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | pilot state: finished 
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | transexitcode: 0
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | exeerrorcode: 0
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | exeerrordiag: 
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | exitcode: 0
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | exitmsg: OK
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | cpuconsumptiontime: 14178 s
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | nevents: 400
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | neventsw: 0
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | pid: 3959783
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | pgrp: 3959783
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | corecount: 2
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | event service: False
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | sizes: {0: 2283935, 6: 2284197, 11: 2284225, 7291: 2311684, 7292: 2320688, 7294: 2320744, 7301: 2321066}
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | --------------------------------------------------
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | 
[2025-12-16 07:36:43] 2025-12-16 06:36:11,802 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 07:36:43] 2025-12-16 06:36:11,813 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,814 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 07:36:43] 2025-12-16 06:36:11,814 | INFO     | job 6931596160 has completed (purged errors)
[2025-12-16 07:36:43] 2025-12-16 06:36:11,814 | INFO     | overall cleanup function is called
[2025-12-16 07:36:43] 2025-12-16 06:36:12,820 | INFO     | --- collectZombieJob: --- 10, [3959783]
[2025-12-16 07:36:43] 2025-12-16 06:36:12,820 | INFO     | zombie collector waiting for pid 3959783
[2025-12-16 07:36:43] 2025-12-16 06:36:12,820 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 07:36:43] 2025-12-16 06:36:12,821 | INFO     | collected zombie processes
[2025-12-16 07:36:43] 2025-12-16 06:36:12,821 | INFO     | will attempt to kill all subprocesses of pid=3959783
[2025-12-16 07:36:43] 2025-12-16 06:36:12,858 | INFO     | process IDs to be killed: [3959783] (in reverse order)
[2025-12-16 07:36:43] 2025-12-16 06:36:12,879 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 07:36:43] 2025-12-16 06:36:12,879 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 07:36:43] 2025-12-16 06:36:12,880 | INFO     | did not find any defunct processes belonging to 3959783
[2025-12-16 07:36:43] 2025-12-16 06:36:12,881 | INFO     | did not find any defunct processes belonging to 3959783
[2025-12-16 07:36:43] 2025-12-16 06:36:12,881 | INFO     | ready for new job
[2025-12-16 07:36:43] 2025-12-16 06:36:12,881 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 07:36:43] 2025-12-16 06:36:12,882 | INFO     | ***************************************
[2025-12-16 07:36:43] 2025-12-16 06:36:12,882 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 07:36:43] 2025-12-16 06:36:12,882 | INFO     | ***************************************
[2025-12-16 07:36:43] 2025-12-16 06:36:12,882 | INFO     | 
[2025-12-16 07:36:43] 2025-12-16 06:36:12,882 | INFO     | architecture information:
[2025-12-16 07:36:43] 2025-12-16 06:36:12,882 | INFO     | executing command: cat /etc/os-release
[2025-12-16 07:36:43] 2025-12-16 06:36:12,890 | INFO     | cat /etc/os-release:
[2025-12-16 07:36:43] NAME="CentOS Linux"
[2025-12-16 07:36:43] VERSION="7 (Core)"
[2025-12-16 07:36:43] ID="centos"
[2025-12-16 07:36:43] ID_LIKE="rhel fedora"
[2025-12-16 07:36:43] VERSION_ID="7"
[2025-12-16 07:36:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 07:36:43] ANSI_COLOR="0;31"
[2025-12-16 07:36:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 07:36:43] HOME_URL="https://www.centos.org/"
[2025-12-16 07:36:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 07:36:43] 
[2025-12-16 07:36:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 07:36:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 07:36:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 07:36:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 07:36:43] 
[2025-12-16 07:36:43] 2025-12-16 06:36:12,890 | INFO     | ***************************************
[2025-12-16 07:36:43] 2025-12-16 06:36:13,394 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-16 07:36:43] 2025-12-16 06:36:13,405 | INFO     | sufficient remaining disk space (174364557312 B)
[2025-12-16 07:36:43] 2025-12-16 06:36:13,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 07:36:43] 2025-12-16 06:36:13,405 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 07:36:43] 2025-12-16 06:36:13,405 | INFO     | update_server=False
[2025-12-16 07:36:43] 2025-12-16 06:36:13,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 07:36:43] 2025-12-16 06:36:13,406 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 07:36:43] 2025-12-16 06:36:13,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:36:43] 2025-12-16 06:36:13,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:36:43] 2025-12-16 06:36:13,406 | INFO     | aborting loop
[2025-12-16 07:36:43] 2025-12-16 06:36:13,584 | INFO     | all payload control threads have been joined
[2025-12-16 07:36:43] 2025-12-16 06:36:13,757 | INFO     | all data control threads have been joined
[2025-12-16 07:36:43] 2025-12-16 06:36:14,411 | INFO     | [job] retrieve thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:14,412 | INFO     | [job] queue monitor thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:14,413 | INFO     | [job] job monitor thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:14,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 07:36:43] 2025-12-16 06:36:14,590 | INFO     | [payload] control thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:14,714 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:14,764 | INFO     | [data] control thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:14,973 | INFO     | all job control threads have been joined
[2025-12-16 07:36:43] 2025-12-16 06:36:15,132 | INFO     | [job] validate thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:15,217 | INFO     | [data] copytool_in thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:15,221 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:15,348 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:15,412 | INFO     | [data] copytool_out thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:15,545 | INFO     | [payload] validate_post thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:15,775 | INFO     | [payload] failed_post thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:15,979 | INFO     | [job] control thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:18,531 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:23,681 | INFO     | [monitor] cgroup control has ended
[2025-12-16 07:36:43] 2025-12-16 06:36:23,959 | INFO     | job.realtimelogging is not enabled
[2025-12-16 07:36:43] 2025-12-16 06:36:24,965 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 07:36:43] 2025-12-16 06:36:25,793 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140599782549312)>', '<ExcThread(monitor, started 140599294416640)>']
[2025-12-16 07:36:43] 2025-12-16 06:36:30,819 | INFO     | all workflow threads have been joined
[2025-12-16 07:36:43] 2025-12-16 06:36:30,819 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 07:36:43] 2025-12-16 06:36:30,819 | INFO     | traces error code: 0
[2025-12-16 07:36:43] 2025-12-16 06:36:30,820 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 07:36:43] 2025-12-16 06:36:42,996 | INFO     | PID=3953362 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 07:36:43] 2025-12-16 06:36:42,996 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 07:36:43] 2025-12-16 06:36:42,996 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 07:36:43] 2025-12-16 06:36:42,996 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 07:36:43] 2025-12-16 06:36:42,996 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 07:36:43] 2025-12-16 06:36:42,996 | INFO     | [monitor] control thread has ended
[2025-12-16 07:36:43] 2025-12-16 06:36:43,035 [wrapper] ==== pilot stdout END ====
[2025-12-16 07:36:43] 2025-12-16 06:36:43,037 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 07:36:43] 2025-12-16 06:36:43,039 [wrapper] pilotpid: 3953362
[2025-12-16 07:36:43] 2025-12-16 06:36:43,042 [wrapper] Pilot exit status: 0
[2025-12-16 07:36:43] 2025-12-16 06:36:43,047 [wrapper] pandaids: 6931596160
[2025-12-16 07:36:43] 2025-12-16 06:36:43,060 [wrapper] cleanup supervisor_pilot 3973944 3953363
[2025-12-16 07:36:43] 2025-12-16 06:36:43,062 [wrapper] Test setup, not cleaning
[2025-12-16 07:36:43] 2025-12-16 06:36:43,064 [wrapper] apfmon messages muted
[2025-12-16 07:36:43] 2025-12-16 06:36:43,066 [wrapper] ==== wrapper stdout END ====
[2025-12-16 07:36:43] 2025-12-16 06:36:43,068 [wrapper] ==== wrapper stderr END ====
[2025-12-16 07:36:43]  *** Error codes and diagnostics ***
[2025-12-16 07:36:43]     "exeErrorCode": 0,
[2025-12-16 07:36:43]     "exeErrorDiag": "",
[2025-12-16 07:36:43]     "pilotErrorCode": 0,
[2025-12-16 07:36:43]     "pilotErrorDiag": "",
[2025-12-16 07:36:43]  *** Listing of results directory ***
[2025-12-16 07:36:43] total 375184
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc    579449 Dec 15 11:33 pilot3.tar.gz
[2025-12-16 07:36:43] -rwx------ 1 boinc boinc     36322 Dec 15 11:34 runpilot2-wrapper.sh
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc      5112 Dec 15 11:34 queuedata.json
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc       100 Dec 16 05:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 07:36:43] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 05:34 run_atlas
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc       105 Dec 16 05:34 job.xml
[2025-12-16 07:36:43] -rw-r--r-- 2 boinc boinc 195743231 Dec 16 05:34 EVNT.47899048._000087.pool.root.1
[2025-12-16 07:36:43] -rw-r--r-- 2 boinc boinc    592385 Dec 16 05:34 input.tar.gz
[2025-12-16 07:36:43] -rw-r--r-- 2 boinc boinc     15847 Dec 16 05:34 start_atlas.sh
[2025-12-16 07:36:43] drwxrwx--x 2 boinc boinc      4096 Dec 16 05:34 shared
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc         0 Dec 16 05:34 boinc_setup_complete
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc      6208 Dec 16 05:34 init_data.xml
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc         0 Dec 16 05:34 boinc_lockfile
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc      2489 Dec 16 05:34 pandaJob.out
[2025-12-16 07:36:43] -rw------- 1 boinc boinc    994531 Dec 16 05:34 agis_schedconf.cvmfs.json
[2025-12-16 07:36:43] -rw------- 1 boinc boinc   1516240 Dec 16 05:34 agis_ddmendpoints.agis.ALL.json
[2025-12-16 07:36:43] drwx------ 5 boinc boinc      4096 Dec 16 05:34 pilot3
[2025-12-16 07:36:43] -rw------- 1 boinc boinc 181866501 Dec 16 07:35 HITS.47899050._002168.pool.root.1
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc       529 Dec 16 07:35 boinc_task_state.xml
[2025-12-16 07:36:43] -rw------- 1 boinc boinc        95 Dec 16 07:35 pilot_heartbeat.json
[2025-12-16 07:36:43] -rw------- 1 boinc boinc      1011 Dec 16 07:35 memory_monitor_summary.json
[2025-12-16 07:36:43] -rw------- 1 boinc boinc    277428 Dec 16 07:36 log.47899050._002168.job.log.tgz.1
[2025-12-16 07:36:43] -rw------- 1 boinc boinc      7751 Dec 16 07:36 heartbeat.json
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc      8192 Dec 16 07:36 boinc_mmap_file
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc        27 Dec 16 07:36 wrapper_checkpoint.txt
[2025-12-16 07:36:43] -rw------- 1 boinc boinc       747 Dec 16 07:36 pilotlog.txt
[2025-12-16 07:36:43] -rw------- 1 boinc boinc   1055320 Dec 16 07:36 log.47899050._002168.job.log.1
[2025-12-16 07:36:43] -rw------- 1 boinc boinc       357 Dec 16 07:36 output.list
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc       620 Dec 16 07:36 runtime_log
[2025-12-16 07:36:43] -rw------- 1 boinc boinc   1351680 Dec 16 07:36 result.tar.gz
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc      8917 Dec 16 07:36 runtime_log.err
[2025-12-16 07:36:43] -rw------- 1 boinc boinc       663 Dec 16 07:36 EhLODmL5Kp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXKTKDmUgiH8m.diag
[2025-12-16 07:36:43] -rw-r--r-- 1 boinc boinc     21299 Dec 16 07:36 stderr.txt
[2025-12-16 07:36:43] HITS file was successfully produced:
[2025-12-16 07:36:43] -rw------- 1 boinc boinc 181866501 Dec 16 07:35 shared/HITS.pool.root.1
[2025-12-16 07:36:43]  *** Contents of shared directory: ***
[2025-12-16 07:36:43] total 370688
[2025-12-16 07:36:43] -rw-r--r-- 2 boinc boinc 195743231 Dec 16 05:34 ATLAS.root_0
[2025-12-16 07:36:43] -rw-r--r-- 2 boinc boinc    592385 Dec 16 05:34 input.tar.gz
[2025-12-16 07:36:43] -rw-r--r-- 2 boinc boinc     15847 Dec 16 05:34 start_atlas.sh
[2025-12-16 07:36:43] -rw------- 1 boinc boinc 181866501 Dec 16 07:35 HITS.pool.root.1
[2025-12-16 07:36:43] -rw------- 1 boinc boinc   1351680 Dec 16 07:36 result.tar.gz
07:36:44 (3949656): run_atlas exited; CPU time 14215.081791
07:36:44 (3949656): called boinc_finish(0)

</stderr_txt>
]]>

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