Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:50:49 (701177): wrapper (7.7.26015): starting
03:50:49 (701177): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 03:50:49] Arguments: --nthreads 4
[2025-12-16 03:50:49] Threads: 4
[2025-12-16 03:50:49] Checking for CVMFS
[2025-12-16 03:50:49] No cvmfs_config command found, will try listing directly
[2025-12-16 03:50:49] CVMFS is ok
[2025-12-16 03:50:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 03:50:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 03:50:49] Further information can be found at the LHC@home message board.
[2025-12-16 03:50:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 03:50:49] Checking for apptainer binary...
[2025-12-16 03:50:49] which: no apptainer in ((null))
[2025-12-16 03:50:49] apptainer is not installed, using version from CVMFS
[2025-12-16 03:50:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 03:50:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-12-16 03:50:49] apptainer works
[2025-12-16 03:50:49] Set ATHENA_PROC_NUMBER=4
[2025-12-16 03:50:49] Set ATHENA_CORE_NUMBER=4
[2025-12-16 03:50:49] Starting ATLAS job with PandaID=6931296271
[2025-12-16 03:50:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 07:06:42]  *** The last 200 lines of the pilot log: ***
[2025-12-16 07:06:42] 2025-12-16 05:48:19,665 | INFO     | executing command: lscpu
[2025-12-16 07:06:42] 2025-12-16 05:48:19,717 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 07:06:42] 2025-12-16 05:48:20,384 | INFO     | monitor loop #772: job 0:6931296271 is in state 'finished'
[2025-12-16 07:06:42] 2025-12-16 05:48:20,384 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 07:06:42] 2025-12-16 05:48:21,653 | INFO     | time since job start (10638s) is within the limit (174528.0s)
[2025-12-16 07:06:42] 2025-12-16 05:48:22,886 | INFO     | monitor loop #773: job 0:6931296271 is in state 'finished'
[2025-12-16 07:06:42] 2025-12-16 05:48:22,887 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 07:06:42] 2025-12-16 05:48:23,658 | INFO     | time since job start (10640s) is within the limit (174528.0s)
[2025-12-16 07:06:42] 2025-12-16 05:48:23,876 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-16 07:06:42] 2025-12-16 05:48:23,886 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2688.202578125
[2025-12-16 07:06:42] 2025-12-16 05:48:23,899 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6931296271/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 07:06:42] 2025-12-16 05:48:23,900 | INFO     | extracted standard info from prmon json
[2025-12-16 07:06:42] 2025-12-16 05:48:23,900 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 07:06:42] 2025-12-16 05:48:23,900 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 07:06:42] 2025-12-16 05:48:23,901 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 07:06:42] 2025-12-16 05:48:23,901 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 07:06:42] 2025-12-16 05:48:23,904 | INFO     | fitting pss+swap vs Time
[2025-12-16 07:06:42] 2025-12-16 05:48:23,905 | INFO     | sum of square deviations: 1633472487.5
[2025-12-16 07:06:42] 2025-12-16 05:48:23,906 | INFO     | sum of deviations: 3442592614.5
[2025-12-16 07:06:42] 2025-12-16 05:48:23,906 | INFO     | mean x: 1765858766.5
[2025-12-16 07:06:42] 2025-12-16 05:48:23,906 | INFO     | mean y: 2362149.706896552
[2025-12-16 07:06:42] 2025-12-16 05:48:23,906 | INFO     | intersect: -3719238547.1661687
[2025-12-16 07:06:42] 2025-12-16 05:48:23,907 | INFO     | chi2: 1.3898534131910567
[2025-12-16 07:06:42] 2025-12-16 05:48:23,907 | INFO     | sum of square deviations: 1496660620.0
[2025-12-16 07:06:42] 2025-12-16 05:48:23,908 | INFO     | sum of deviations: 2999136126.000006
[2025-12-16 07:06:42] 2025-12-16 05:48:23,908 | INFO     | mean x: 1765858614.0
[2025-12-16 07:06:42] 2025-12-16 05:48:23,908 | INFO     | mean y: 2361655.2662721896
[2025-12-16 07:06:42] 2025-12-16 05:48:23,908 | INFO     | intersect: -3536216357.6005993
[2025-12-16 07:06:42] 2025-12-16 05:48:23,909 | INFO     | chi2: 1.3894128826450451
[2025-12-16 07:06:42] 2025-12-16 05:48:23,909 | INFO     | current chi2=1.3894128826450451 (change=0.03169618765766963 %)
[2025-12-16 07:06:42] 2025-12-16 05:48:23,909 | INFO     | right removable region: 168
[2025-12-16 07:06:42] 2025-12-16 05:48:23,909 | INFO     | sum of square deviations: 1496660620.0
[2025-12-16 07:06:42] 2025-12-16 05:48:23,910 | INFO     | sum of deviations: -14042083856.0
[2025-12-16 07:06:42] 2025-12-16 05:48:23,910 | INFO     | mean x: 1765858919.0
[2025-12-16 07:06:42] 2025-12-16 05:48:23,910 | INFO     | mean y: 2381234.75147929
[2025-12-16 07:06:42] 2025-12-16 05:48:23,910 | INFO     | intersect: 16570157981.936499
[2025-12-16 07:06:42] 2025-12-16 05:48:23,911 | INFO     | chi2: 0.18416741185216012
[2025-12-16 07:06:42] 2025-12-16 05:48:23,911 | INFO     | current chi2=0.18416741185216012 (change=86.74914849981784 %)
[2025-12-16 07:06:42] 2025-12-16 05:48:23,911 | INFO     | sum of square deviations: 1367709365.0
[2025-12-16 07:06:42] 2025-12-16 05:48:23,912 | INFO     | sum of deviations: -7545027505.499997
[2025-12-16 07:06:42] 2025-12-16 05:48:23,912 | INFO     | mean x: 1765859071.5
[2025-12-16 07:06:42] 2025-12-16 05:48:23,912 | INFO     | mean y: 2373518.3597560977
[2025-12-16 07:06:42] 2025-12-16 05:48:23,912 | INFO     | intersect: 9743810994.957123
[2025-12-16 07:06:42] 2025-12-16 05:48:23,913 | INFO     | chi2: 0.14180244394190264
[2025-12-16 07:06:42] 2025-12-16 05:48:23,913 | INFO     | current chi2=0.14180244394190264 (change=23.00350940711804 %)
[2025-12-16 07:06:42] 2025-12-16 05:48:23,913 | INFO     | left removable region: 20
[2025-12-16 07:06:42] 2025-12-16 05:48:23,913 | INFO     | sum of square deviations: 1005179777.0
[2025-12-16 07:06:42] 2025-12-16 05:48:23,914 | INFO     | sum of deviations: 2366878903.5000005
[2025-12-16 07:06:42] 2025-12-16 05:48:23,914 | INFO     | mean x: 1765859193.5
[2025-12-16 07:06:42] 2025-12-16 05:48:23,914 | INFO     | mean y: 2359606.831081081
[2025-12-16 07:06:42] 2025-12-16 05:48:23,914 | INFO     | intersect: -4155677559.5361
[2025-12-16 07:06:42] 2025-12-16 05:48:23,915 | INFO     | chi2: 0.0018100587284826104
[2025-12-16 07:06:42] 2025-12-16 05:48:23,915 | INFO     | current memory leak: 2.35 B/s (using 148 data points, chi2=0.00)
[2025-12-16 07:06:42] 2025-12-16 05:48:23,915 | INFO     | could have reported an average CPU frequency of 2607 MHz (9 samples)
[2025-12-16 07:06:42] 2025-12-16 05:48:23,916 | INFO     | ..............................
[2025-12-16 07:06:42] 2025-12-16 05:48:23,916 | INFO     | . Timing measurements:
[2025-12-16 07:06:42] 2025-12-16 05:48:23,916 | INFO     | . get job = 0 s
[2025-12-16 07:06:42] 2025-12-16 05:48:23,916 | INFO     | . initial setup = 1 s
[2025-12-16 07:06:42] 2025-12-16 05:48:23,916 | INFO     | . payload setup = 6 s
[2025-12-16 07:06:42] 2025-12-16 05:48:23,916 | INFO     | . stage-in = 0 s
[2025-12-16 07:06:42] 2025-12-16 05:48:23,916 | INFO     | . payload execution = 10603 s
[2025-12-16 07:06:42] 2025-12-16 05:48:23,916 | INFO     | . stage-out = 0 s
[2025-12-16 07:06:42] 2025-12-16 05:48:23,916 | INFO     | . log creation = 0 s
[2025-12-16 07:06:42] 2025-12-16 05:48:23,916 | INFO     | ..............................
[2025-12-16 07:06:42] 2025-12-16 05:48:24,014 | INFO     | 
[2025-12-16 07:06:42] 2025-12-16 05:48:24,014 | INFO     | job summary report
[2025-12-16 07:06:42] 2025-12-16 05:48:24,014 | INFO     | --------------------------------------------------
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | PanDA job id: 6931296271
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | task id: 47898878
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | errors: (none)
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | pilot state: finished 
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | transexitcode: 0
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | exeerrorcode: 0
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | exeerrordiag: 
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | exitcode: 0
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | exitmsg: OK
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | cpuconsumptiontime: 40367 s
[2025-12-16 07:06:42] 2025-12-16 05:48:24,015 | INFO     | nevents: 400
[2025-12-16 07:06:42] 2025-12-16 05:48:24,016 | INFO     | neventsw: 0
[2025-12-16 07:06:42] 2025-12-16 05:48:24,016 | INFO     | pid: 722730
[2025-12-16 07:06:42] 2025-12-16 05:48:24,016 | INFO     | pgrp: 722730
[2025-12-16 07:06:42] 2025-12-16 05:48:24,016 | INFO     | corecount: 4
[2025-12-16 07:06:42] 2025-12-16 05:48:24,016 | INFO     | event service: False
[2025-12-16 07:06:42] 2025-12-16 05:48:24,016 | INFO     | sizes: {0: 2283066, 1: 2283933, 6: 2284195, 12: 2284223, 10613: 2313071, 10614: 2313070, 10615: 2322274, 10618: 2322330, 10625: 2322588}
[2025-12-16 07:06:42] 2025-12-16 05:48:24,016 | INFO     | --------------------------------------------------
[2025-12-16 07:06:42] 2025-12-16 05:48:24,016 | INFO     | 
[2025-12-16 07:06:42] 2025-12-16 05:48:24,016 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-12-16 07:06:42] 2025-12-16 05:48:24,037 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,038 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,039 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,039 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,039 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,040 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,040 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,040 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,040 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,040 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,040 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,040 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,040 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,040 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,040 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 07:06:42] 2025-12-16 05:48:24,040 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,041 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 07:06:42] 2025-12-16 05:48:24,041 | INFO     | job 6931296271 has completed (purged errors)
[2025-12-16 07:06:42] 2025-12-16 05:48:24,041 | INFO     | overall cleanup function is called
[2025-12-16 07:06:42] 2025-12-16 05:48:25,049 | INFO     | --- collectZombieJob: --- 10, [722730]
[2025-12-16 07:06:42] 2025-12-16 05:48:25,049 | INFO     | zombie collector waiting for pid 722730
[2025-12-16 07:06:42] 2025-12-16 05:48:25,049 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 07:06:42] 2025-12-16 05:48:25,049 | INFO     | collected zombie processes
[2025-12-16 07:06:42] 2025-12-16 05:48:25,050 | INFO     | will attempt to kill all subprocesses of pid=722730
[2025-12-16 07:06:42] 2025-12-16 05:48:25,441 | INFO     | process IDs to be killed: [722730] (in reverse order)
[2025-12-16 07:06:42] 2025-12-16 05:48:25,554 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 07:06:42] 2025-12-16 05:48:25,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 07:06:42] 2025-12-16 05:48:25,568 | INFO     | did not find any defunct processes belonging to 722730
[2025-12-16 07:06:42] 2025-12-16 05:48:25,581 | INFO     | did not find any defunct processes belonging to 722730
[2025-12-16 07:06:42] 2025-12-16 05:48:25,581 | INFO     | ready for new job
[2025-12-16 07:06:42] 2025-12-16 05:48:25,581 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 07:06:42] 2025-12-16 05:48:25,583 | INFO     | ***************************************
[2025-12-16 07:06:42] 2025-12-16 05:48:25,584 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 07:06:42] 2025-12-16 05:48:25,584 | INFO     | ***************************************
[2025-12-16 07:06:42] 2025-12-16 05:48:25,584 | INFO     | 
[2025-12-16 07:06:42] 2025-12-16 05:48:25,588 | INFO     | architecture information:
[2025-12-16 07:06:42] 2025-12-16 05:48:25,588 | INFO     | executing command: cat /etc/os-release
[2025-12-16 07:06:42] 2025-12-16 05:48:25,603 | INFO     | cat /etc/os-release:
[2025-12-16 07:06:42] NAME="CentOS Linux"
[2025-12-16 07:06:42] VERSION="7 (Core)"
[2025-12-16 07:06:42] ID="centos"
[2025-12-16 07:06:42] ID_LIKE="rhel fedora"
[2025-12-16 07:06:42] VERSION_ID="7"
[2025-12-16 07:06:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 07:06:42] ANSI_COLOR="0;31"
[2025-12-16 07:06:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 07:06:42] HOME_URL="https://www.centos.org/"
[2025-12-16 07:06:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 07:06:42] 
[2025-12-16 07:06:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 07:06:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 07:06:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 07:06:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 07:06:42] 
[2025-12-16 07:06:42] 2025-12-16 05:48:25,604 | INFO     | ***************************************
[2025-12-16 07:06:42] 2025-12-16 05:48:26,107 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-12-16 07:06:42] 2025-12-16 05:48:26,123 | INFO     | sufficient remaining disk space (642083979264 B)
[2025-12-16 07:06:42] 2025-12-16 05:48:26,124 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 07:06:42] 2025-12-16 05:48:26,124 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 07:06:42] 2025-12-16 05:48:26,124 | INFO     | update_server=False
[2025-12-16 07:06:42] 2025-12-16 05:48:26,124 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 07:06:42] 2025-12-16 05:48:26,395 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:06:42] 2025-12-16 05:48:26,395 | INFO     | aborting loop
[2025-12-16 07:06:42] 2025-12-16 05:48:26,482 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 07:06:42] 2025-12-16 05:48:26,552 | INFO     | all data control threads have been joined
[2025-12-16 07:06:42] 2025-12-16 05:48:27,129 | INFO     | [job] retrieve thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:27,400 | INFO     | [job] job monitor thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:27,483 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 07:06:42] 2025-12-16 05:48:27,486 | INFO     | all payload control threads have been joined
[2025-12-16 07:06:42] 2025-12-16 05:48:27,546 | INFO     | [job] validate thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:27,558 | INFO     | [data] control thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:27,586 | INFO     | all job control threads have been joined
[2025-12-16 07:06:42] 2025-12-16 05:48:27,844 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:27,863 | INFO     | [payload] validate_post thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:28,146 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:28,156 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:28,412 | INFO     | [data] copytool_in thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:28,486 | INFO     | [data] copytool_out thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:28,491 | INFO     | [payload] control thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:28,588 | INFO     | [job] control thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:28,695 | INFO     | [payload] failed_post thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:29,024 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:06:42] 2025-12-16 05:48:30,025 | INFO     | [job] queue monitor thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:31,489 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:37,167 | INFO     | job.realtimelogging is not enabled
[2025-12-16 07:06:42] 2025-12-16 05:48:38,172 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 07:06:42] 2025-12-16 05:48:57,233 | INFO     | PID=709029 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 07:06:42] 2025-12-16 05:48:57,234 | INFO     | .. there are 4 such processes running
[2025-12-16 07:06:42] 2025-12-16 05:48:57,234 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 07:06:42] 2025-12-16 05:48:57,234 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 07:06:42] 2025-12-16 05:48:57,234 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 07:06:42] 2025-12-16 05:49:19,983 | INFO     | [monitor] cgroup control has ended
[2025-12-16 07:06:42] 2025-12-16 05:49:20,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23336333526848)>', '<ExcThread(monitor, started 23335878481664)>']
[2025-12-16 07:06:42] 2025-12-16 05:49:21,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 07:06:42] 2025-12-16 05:49:21,313 | INFO     | [monitor] control thread has ended
[2025-12-16 07:06:42] 2025-12-16 05:49:25,847 | INFO     | all workflow threads have been joined
[2025-12-16 07:06:42] 2025-12-16 05:49:25,848 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 07:06:42] 2025-12-16 05:49:25,848 | INFO     | traces error code: 0
[2025-12-16 07:06:42] 2025-12-16 05:49:25,848 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 07:06:42] 2025-12-16 05:49:26,041 [wrapper] ==== pilot stdout END ====
[2025-12-16 07:06:42] 2025-12-16 05:49:26,045 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 07:06:42] 2025-12-16 05:49:26,048 [wrapper] pilotpid: 709029
[2025-12-16 07:06:42] 2025-12-16 05:49:26,051 [wrapper] Pilot exit status: 0
[2025-12-16 07:06:42] 2025-12-16 05:49:26,062 [wrapper] pandaids: 6931296271
[2025-12-16 07:06:42] 2025-12-16 05:49:26,136 [wrapper] cleanup supervisor_pilot  855084 709030
[2025-12-16 07:06:42] 2025-12-16 05:49:26,139 [wrapper] Test setup, not cleaning
[2025-12-16 07:06:42] 2025-12-16 05:49:26,142 [wrapper] apfmon messages muted
[2025-12-16 07:06:42] 2025-12-16 05:49:26,145 [wrapper] ==== wrapper stdout END ====
[2025-12-16 07:06:42] 2025-12-16 05:49:26,148 [wrapper] ==== wrapper stderr END ====
[2025-12-16 07:06:42]  *** Error codes and diagnostics ***
[2025-12-16 07:06:42]     "exeErrorCode": 0,
[2025-12-16 07:06:42]     "exeErrorDiag": "",
[2025-12-16 07:06:42]     "pilotErrorCode": 0,
[2025-12-16 07:06:42]     "pilotErrorDiag": "",
[2025-12-16 07:06:42]  *** Listing of results directory ***
[2025-12-16 07:06:42] total 369920
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc    579449 Dec 15 04:37 pilot3.tar.gz
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc      5112 Dec 15 04:37 queuedata.json
[2025-12-16 07:06:42] -rwx------ 1 boinc boinc     36322 Dec 15 04:38 runpilot2-wrapper.sh
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc       100 Dec 16 03:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 07:06:42] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 03:50 run_atlas
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc       105 Dec 16 03:50 job.xml
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc      6638 Dec 16 03:50 init_data.xml
[2025-12-16 07:06:42] -rw-r--r-- 2 boinc boinc 197154594 Dec 16 03:50 EVNT.47898875._000134.pool.root.1
[2025-12-16 07:06:42] -rw-r--r-- 2 boinc boinc     15847 Dec 16 03:50 start_atlas.sh
[2025-12-16 07:06:42] drwxrwx--x 2 boinc boinc      4096 Dec 16 03:50 shared
[2025-12-16 07:06:42] -rw-r--r-- 2 boinc boinc    592387 Dec 16 03:50 input.tar.gz
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc         0 Dec 16 03:50 boinc_lockfile
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc      2500 Dec 16 03:50 pandaJob.out
[2025-12-16 07:06:42] -rw------- 1 boinc boinc    994523 Dec 16 03:51 agis_schedconf.cvmfs.json
[2025-12-16 07:06:42] -rw------- 1 boinc boinc   1516240 Dec 16 03:51 agis_ddmendpoints.agis.ALL.json
[2025-12-16 07:06:42] drwx------ 5 boinc boinc      4096 Dec 16 03:51 pilot3
[2025-12-16 07:06:42] -rw------- 1 boinc boinc 173968144 Dec 16 06:47 HITS.47898878._003379.pool.root.1
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc       529 Dec 16 06:47 boinc_task_state.xml
[2025-12-16 07:06:42] -rw------- 1 boinc boinc      1035 Dec 16 06:48 memory_monitor_summary.json
[2025-12-16 07:06:42] -rw------- 1 boinc boinc        95 Dec 16 06:48 pilot_heartbeat.json
[2025-12-16 07:06:42] -rw------- 1 boinc boinc    365112 Dec 16 06:48 log.47898878._003379.job.log.tgz.1
[2025-12-16 07:06:42] -rw------- 1 boinc boinc      7825 Dec 16 06:48 heartbeat.json
[2025-12-16 07:06:42] -rw------- 1 boinc boinc      4904 Dec 16 06:49 pilotlog.txt
[2025-12-16 07:06:42] -rw------- 1 boinc boinc   1511474 Dec 16 06:49 log.47898878._003379.job.log.1
[2025-12-16 07:06:42] -rw------- 1 boinc boinc       357 Dec 16 06:49 output.list
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc       620 Dec 16 06:49 runtime_log
[2025-12-16 07:06:42] -rw------- 1 boinc boinc   1894400 Dec 16 06:49 result.tar.gz
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc      9206 Dec 16 06:49 runtime_log.err
[2025-12-16 07:06:42] -rw------- 1 boinc boinc       666 Dec 16 06:49 jHgMDmkaEp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfjSKDmGyIE9n.diag
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc        26 Dec 16 07:06 wrapper_checkpoint.txt
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc      8192 Dec 16 07:06 boinc_mmap_file
[2025-12-16 07:06:42] -rw-r--r-- 1 boinc boinc     21156 Dec 16 07:06 stderr.txt
[2025-12-16 07:06:42] HITS file was successfully produced:
[2025-12-16 07:06:42] -rw------- 1 boinc boinc 173968144 Dec 16 06:47 shared/HITS.pool.root.1
[2025-12-16 07:06:42]  *** Contents of shared directory: ***
[2025-12-16 07:06:42] total 364884
[2025-12-16 07:06:42] -rw-r--r-- 2 boinc boinc 197154594 Dec 16 03:50 ATLAS.root_0
[2025-12-16 07:06:42] -rw-r--r-- 2 boinc boinc     15847 Dec 16 03:50 start_atlas.sh
[2025-12-16 07:06:42] -rw-r--r-- 2 boinc boinc    592387 Dec 16 03:50 input.tar.gz
[2025-12-16 07:06:42] -rw------- 1 boinc boinc 173968144 Dec 16 06:47 HITS.pool.root.1
[2025-12-16 07:06:42] -rw------- 1 boinc boinc   1894400 Dec 16 06:49 result.tar.gz
07:06:44 (701177): run_atlas exited; CPU time 40746.909925
07:06:44 (701177): called boinc_finish(0)

</stderr_txt>
]]>

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