Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:26:13 (1151221): wrapper (7.7.26015): starting
21:26:13 (1151221): wrapper: running run_atlas (--nthreads 4)
[2025-12-15 21:26:13] Arguments: --nthreads 4
[2025-12-15 21:26:13] Threads: 4
[2025-12-15 21:26:13] Checking for CVMFS
[2025-12-15 21:26:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 21:26:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 21:26:13] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 21:26:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 21:26:13] 2.9.2.0 31218 3985 95208 154046 3 57 18955634 36864001 0 130560 0 2950769 99.990 145936 8571 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 21:26:13] CVMFS is ok
[2025-12-15 21:26:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 21:26:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 21:26:13] Further information can be found at the LHC@home message board.
[2025-12-15 21:26:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 21:26:13] Checking for apptainer binary...
[2025-12-15 21:26:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 21:26:13] Running /usr/bin/apptainer --version
[2025-12-15 21:26:13] apptainer version 1.4.1-1.1
[2025-12-15 21:26:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 21:26:13] thA332a
[2025-12-15 21:26:13] apptainer works
[2025-12-15 21:26:13] Set ATHENA_PROC_NUMBER=4
[2025-12-15 21:26:13] Set ATHENA_CORE_NUMBER=4
[2025-12-15 21:26:13] Starting ATLAS job with PandaID=6931294264
[2025-12-15 21:26:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 22:33:30]  *** The last 200 lines of the pilot log: ***
[2025-12-15 22:33:31] 2025-12-15 21:32:56,108 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 22:33:31] 2025-12-15 21:32:56,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 22:33:31] 2025-12-15 21:32:56,108 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 22:33:31] 2025-12-15 21:32:56,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 22:33:31] 2025-12-15 21:32:56,108 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 22:33:31] 2025-12-15 21:32:56,108 | INFO     | job 6931294264 has completed (purged errors)
[2025-12-15 22:33:31] 2025-12-15 21:32:56,108 | INFO     | overall cleanup function is called
[2025-12-15 22:33:31] 2025-12-15 21:32:57,115 | INFO     | --- collectZombieJob: --- 10, [1161603]
[2025-12-15 22:33:31] 2025-12-15 21:32:57,115 | INFO     | zombie collector waiting for pid 1161603
[2025-12-15 22:33:31] 2025-12-15 21:32:57,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 22:33:31] 2025-12-15 21:32:57,115 | INFO     | collected zombie processes
[2025-12-15 22:33:31] 2025-12-15 21:32:57,115 | INFO     | will attempt to kill all subprocesses of pid=1161603
[2025-12-15 22:33:31] 2025-12-15 21:32:57,159 | INFO     | process IDs to be killed: [1161603] (in reverse order)
[2025-12-15 22:33:31] 2025-12-15 21:32:57,190 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 22:33:31] 2025-12-15 21:32:57,190 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 22:33:31] 2025-12-15 21:32:57,192 | INFO     | did not find any defunct processes belonging to 1161603
[2025-12-15 22:33:31] 2025-12-15 21:32:57,193 | INFO     | did not find any defunct processes belonging to 1161603
[2025-12-15 22:33:31] 2025-12-15 21:32:57,193 | INFO     | ready for new job
[2025-12-15 22:33:31] 2025-12-15 21:32:57,193 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 22:33:31] 2025-12-15 21:32:57,194 | INFO     | ***************************************
[2025-12-15 22:33:31] 2025-12-15 21:32:57,194 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 22:33:31] 2025-12-15 21:32:57,194 | INFO     | ***************************************
[2025-12-15 22:33:31] 2025-12-15 21:32:57,194 | INFO     | 
[2025-12-15 22:33:31] 2025-12-15 21:32:57,194 | INFO     | architecture information:
[2025-12-15 22:33:31] 2025-12-15 21:32:57,195 | INFO     | executing command: cat /etc/os-release
[2025-12-15 22:33:31] 2025-12-15 21:32:57,207 | INFO     | cat /etc/os-release:
[2025-12-15 22:33:31] NAME="CentOS Linux"
[2025-12-15 22:33:31] VERSION="7 (Core)"
[2025-12-15 22:33:31] ID="centos"
[2025-12-15 22:33:31] ID_LIKE="rhel fedora"
[2025-12-15 22:33:31] VERSION_ID="7"
[2025-12-15 22:33:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 22:33:31] ANSI_COLOR="0;31"
[2025-12-15 22:33:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 22:33:31] HOME_URL="https://www.centos.org/"
[2025-12-15 22:33:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 22:33:31] 
[2025-12-15 22:33:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 22:33:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 22:33:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 22:33:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 22:33:31] 
[2025-12-15 22:33:31] 2025-12-15 21:32:57,207 | INFO     | ***************************************
[2025-12-15 22:33:31] 2025-12-15 21:32:57,711 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 22:33:31] 2025-12-15 21:32:57,727 | INFO     | sufficient remaining disk space (341176221696 B)
[2025-12-15 22:33:31] 2025-12-15 21:32:57,728 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 22:33:31] 2025-12-15 21:32:57,728 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 22:33:31] 2025-12-15 21:32:57,728 | INFO     | update_server=False
[2025-12-15 22:33:31] 2025-12-15 21:32:57,728 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 22:33:31] 2025-12-15 21:32:57,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 22:33:31] 2025-12-15 21:32:57,771 | INFO     | all payload control threads have been joined
[2025-12-15 22:33:31] 2025-12-15 21:32:57,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 22:33:31] 2025-12-15 21:32:57,935 | INFO     | aborting loop
[2025-12-15 22:33:31] 2025-12-15 21:32:58,392 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 22:33:31] 2025-12-15 21:32:58,395 | INFO     | all data control threads have been joined
[2025-12-15 22:33:31] 2025-12-15 21:32:58,734 | INFO     | [job] retrieve thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:32:58,734 | INFO     | [job] queue monitor thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:32:58,776 | INFO     | [payload] control thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:32:58,906 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 22:33:31] 2025-12-15 21:32:58,941 | INFO     | [job] job monitor thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:32:59,010 | INFO     | [payload] validate_post thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:32:59,084 | INFO     | all job control threads have been joined
[2025-12-15 22:33:31] 2025-12-15 21:32:59,388 | INFO     | [job] validate thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:32:59,400 | INFO     | [data] control thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:32:59,422 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:32:59,490 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:32:59,598 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:32:59,827 | INFO     | [data] copytool_in thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:33:00,084 | INFO     | [payload] failed_post thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:33:00,090 | INFO     | [job] control thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:33:00,398 | INFO     | [data] copytool_out thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:33:02,913 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:33:08,043 | INFO     | job.realtimelogging is not enabled
[2025-12-15 22:33:31] 2025-12-15 21:33:09,049 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 22:33:31] 2025-12-15 21:33:25,259 | INFO     | [monitor] cgroup control has ended
[2025-12-15 22:33:31] 2025-12-15 21:33:25,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140534534907712)>', '<ExcThread(monitor, started 140533712271104)>']
[2025-12-15 22:33:31] 2025-12-15 21:33:27,423 | INFO     | PID=1155023 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 22:33:31] 2025-12-15 21:33:27,423 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 22:33:31] 2025-12-15 21:33:27,423 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 22:33:31] 2025-12-15 21:33:27,423 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 22:33:31] 2025-12-15 21:33:27,423 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 22:33:31] 2025-12-15 21:33:27,423 | INFO     | [monitor] control thread has ended
[2025-12-15 22:33:31] 2025-12-15 21:33:30,817 | INFO     | all workflow threads have been joined
[2025-12-15 22:33:31] 2025-12-15 21:33:30,817 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 22:33:31] 2025-12-15 21:33:30,817 | INFO     | traces error code: 0
[2025-12-15 22:33:31] 2025-12-15 21:33:30,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 22:33:31] 2025-12-15 21:33:30,893 [wrapper] ==== pilot stdout END ====
[2025-12-15 22:33:31] 2025-12-15 21:33:30,897 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 22:33:31] 2025-12-15 21:33:30,901 [wrapper] pilotpid: 1155023
[2025-12-15 22:33:31] 2025-12-15 21:33:30,905 [wrapper] Pilot exit status: 0
[2025-12-15 22:33:31] 2025-12-15 21:33:30,915 [wrapper] pandaids: 6931294264
[2025-12-15 22:33:31] 2025-12-15 21:33:30,936 [wrapper] cleanup supervisor_pilot 1171165 1155024
[2025-12-15 22:33:31] 2025-12-15 21:33:30,940 [wrapper] Test setup, not cleaning
[2025-12-15 22:33:31] 2025-12-15 21:33:30,944 [wrapper] apfmon messages muted
[2025-12-15 22:33:31] 2025-12-15 21:33:30,947 [wrapper] ==== wrapper stdout END ====
[2025-12-15 22:33:31] 2025-12-15 21:33:30,951 [wrapper] ==== wrapper stderr END ====
[2025-12-15 22:33:31]  *** Error codes and diagnostics ***
[2025-12-15 22:33:31]     "exeErrorCode": 0,
[2025-12-15 22:33:31]     "exeErrorDiag": "",
[2025-12-15 22:33:31]     "pilotErrorCode": 0,
[2025-12-15 22:33:31]     "pilotErrorDiag": "",
[2025-12-15 22:33:31]  *** Listing of results directory ***
[2025-12-15 22:33:31] total 376904
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc    579449 Dec 15 04:37 pilot3.tar.gz
[2025-12-15 22:33:31] -rwx------ 1 boinc boinc     36322 Dec 15 04:40 runpilot2-wrapper.sh
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc      5112 Dec 15 04:42 queuedata.json
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc       100 Dec 15 21:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 22:33:31] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 21:26 run_atlas
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc       105 Dec 15 21:26 job.xml
[2025-12-15 22:33:31] -rw-r--r-- 2 boinc boinc 200180542 Dec 15 21:26 EVNT.47898894._000069.pool.root.1
[2025-12-15 22:33:31] -rw-r--r-- 2 boinc boinc    592395 Dec 15 21:26 input.tar.gz
[2025-12-15 22:33:31] -rw-r--r-- 2 boinc boinc     15847 Dec 15 21:26 start_atlas.sh
[2025-12-15 22:33:31] drwxrwx--x 2 boinc boinc      4096 Dec 15 21:26 shared
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc         0 Dec 15 21:26 boinc_setup_complete
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc      6370 Dec 15 21:26 init_data.xml
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc         0 Dec 15 21:26 boinc_lockfile
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc      2505 Dec 15 21:26 pandaJob.out
[2025-12-15 22:33:31] -rw------- 1 boinc boinc    994539 Dec 15 21:26 agis_schedconf.cvmfs.json
[2025-12-15 22:33:31] -rw------- 1 boinc boinc   1516240 Dec 15 21:26 agis_ddmendpoints.agis.ALL.json
[2025-12-15 22:33:31] drwx------ 5 boinc boinc      4096 Dec 15 21:26 pilot3
[2025-12-15 22:33:31] -rw------- 1 boinc boinc 180123440 Dec 15 22:32 HITS.47898896._001730.pool.root.1
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc       529 Dec 15 22:32 boinc_task_state.xml
[2025-12-15 22:33:31] -rw------- 1 boinc boinc        95 Dec 15 22:32 pilot_heartbeat.json
[2025-12-15 22:33:31] -rw------- 1 boinc boinc      1022 Dec 15 22:32 memory_monitor_summary.json
[2025-12-15 22:33:31] -rw------- 1 boinc boinc    269839 Dec 15 22:32 log.47898896._001730.job.log.tgz.1
[2025-12-15 22:33:31] -rw------- 1 boinc boinc      7761 Dec 15 22:32 heartbeat.json
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc      8192 Dec 15 22:33 boinc_mmap_file
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc        27 Dec 15 22:33 wrapper_checkpoint.txt
[2025-12-15 22:33:31] -rw------- 1 boinc boinc      4824 Dec 15 22:33 pilotlog.txt
[2025-12-15 22:33:31] -rw------- 1 boinc boinc    597417 Dec 15 22:33 log.47898896._001730.job.log.1
[2025-12-15 22:33:31] -rw------- 1 boinc boinc       357 Dec 15 22:33 output.list
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc       620 Dec 15 22:33 runtime_log
[2025-12-15 22:33:31] -rw------- 1 boinc boinc    890880 Dec 15 22:33 result.tar.gz
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc      8902 Dec 15 22:33 runtime_log.err
[2025-12-15 22:33:31] -rw------- 1 boinc boinc       659 Dec 15 22:33 kxdMDm3cEp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG5WKDmuZ3Gum.diag
[2025-12-15 22:33:31] -rw-r--r-- 1 boinc boinc     11409 Dec 15 22:33 stderr.txt
[2025-12-15 22:33:31] HITS file was successfully produced:
[2025-12-15 22:33:31] -rw------- 1 boinc boinc 180123440 Dec 15 22:32 shared/HITS.pool.root.1
[2025-12-15 22:33:31]  *** Contents of shared directory: ***
[2025-12-15 22:33:31] total 372872
[2025-12-15 22:33:31] -rw-r--r-- 2 boinc boinc 200180542 Dec 15 21:26 ATLAS.root_0
[2025-12-15 22:33:31] -rw-r--r-- 2 boinc boinc    592395 Dec 15 21:26 input.tar.gz
[2025-12-15 22:33:31] -rw-r--r-- 2 boinc boinc     15847 Dec 15 21:26 start_atlas.sh
[2025-12-15 22:33:31] -rw------- 1 boinc boinc 180123440 Dec 15 22:32 HITS.pool.root.1
[2025-12-15 22:33:31] -rw------- 1 boinc boinc    890880 Dec 15 22:33 result.tar.gz
22:33:32 (1151221): run_atlas exited; CPU time 14935.809880
22:33:32 (1151221): called boinc_finish(0)

</stderr_txt>
]]>

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