Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:40:32 (2708555): wrapper (7.7.26015): starting
05:40:32 (2708555): wrapper: running run_atlas (--nthreads 8)
[2025-12-15 05:40:32] Arguments: --nthreads 8
[2025-12-15 05:40:32] Threads: 8
[2025-12-15 05:40:32] Checking for CVMFS
[2025-12-15 05:40:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 05:40:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 05:40:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 05:40:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 05:40:33] 2.11.3.0 4062081 20727 238808 154034 2 216 27031988 45568001 11526 130560 0 88346354 99.793 50596965 18660 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-12-15 05:40:33] CVMFS is ok
[2025-12-15 05:40:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 05:40:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 05:40:33] Further information can be found at the LHC@home message board.
[2025-12-15 05:40:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 05:40:33] Checking for apptainer binary...
[2025-12-15 05:40:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 05:40:33] Running /usr/bin/apptainer --version
[2025-12-15 05:40:33] apptainer version 1.4.1-1.el9
[2025-12-15 05:40:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 05:40:33] wns0019.triumf.lcg
[2025-12-15 05:40:33] apptainer works
[2025-12-15 05:40:33] Set ATHENA_PROC_NUMBER=8
[2025-12-15 05:40:33] Set ATHENA_CORE_NUMBER=8
[2025-12-15 05:40:33] Starting ATLAS job with PandaID=6929531920
[2025-12-15 05:40:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 05:46:07]  *** The last 200 lines of the pilot log: ***
[2025-12-15 05:46:07] 2025-12-15 13:45:12,287 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | WARNING  | wrong length of table data, x=[1765806130.0], y=[823.0] (must be same and length>=4)
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | ..............................
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . Timing measurements:
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . get job = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . initial setup = 4 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . payload setup = 17 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . stage-in = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . payload execution = 61 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . stage-out = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . log creation = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,289 | INFO     | ..............................
[2025-12-15 05:46:07] 2025-12-15 13:45:12,289 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-15 05:46:07] 2025-12-15 13:45:12,289 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929531920/pilotlog.txt
[2025-12-15 05:46:07] 2025-12-15 13:45:12,326 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-15 05:46:07] - Log from pilotlog.txt -
[2025-12-15 05:46:07] 2025-12-15 13:45:12,286 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6929531920/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 05:46:07] 2025-12-15 13:45:12,286 | INFO     | extracted standard info from prmon json
[2025-12-15 05:46:07] 2025-12-15 13:45:12,286 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 05:46:07] 2025-12-15 13:45:12,287 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 05:46:07] 2025-12-15 13:45:12,287 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 05:46:07] 2025-12-15 13:45:12,287 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | WARNING  | wrong length of table data, x=[1765806130.0], y=[823.0] (must be same and length>=4)
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | ..............................
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . Timing measurements:
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . get job = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . initial setup = 4 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . payload setup = 17 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . stage-in = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . payload execution = 61 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . stage-out = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . log creation = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,289 | INFO     | ..............................
[2025-12-15 05:46:07] 2025-12-15 13:45:12,289 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-15 05:46:07] 2025-12-15 13:45:12,289 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929531920/pilotlog.txt
[2025-12-15 05:46:07] 2025-12-15 13:45:12,326 | WARNING  | 
[2025-12-15 05:46:07] [begin log extracts]
[2025-12-15 05:46:07] - Log from pilotlog.txt -
[2025-12-15 05:46:07] 2025-12-15 13:45:12,286 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6929531920/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 05:46:07] 2025-12-15 13:45:12,286 | INFO     | extracted standard info from prmon json
[2025-12-15 05:46:07] 2025-12-15 13:45:12,286 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 05:46:07] 2025-12-15 13:45:12,287 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 05:46:07] 2025-12-15 13:45:12,287 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 05:46:07] 2025-12-15 13:45:12,287 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | WARNING  | wrong length of table data, x=[1765806130.0], y=[823.0] (must be same and length>=4)
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | ..............................
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . Timing measurements:
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . get job = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . initial setup = 4 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . payload setup = 17 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . stage-in = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . payload execution = 61 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . stage-out = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,288 | INFO     | . log creation = 0 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,289 | INFO     | ..............................
[2025-12-15 05:46:07] 2025-12-15 13:45:12,289 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-15 05:46:07] 2025-12-15 13:45:12,289 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929531920/pilotlog.txt
[2025-12-15 05:46:07] [end log extracts]
[2025-12-15 05:46:07] 2025-12-15 13:45:12,326 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-12-15 05:46:07] 2025-12-15 13:45:12,327 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-15 05:46:07] 2025-12-15 13:45:12,768 | INFO     | 
[2025-12-15 05:46:07] 2025-12-15 13:45:12,768 | INFO     | job summary report
[2025-12-15 05:46:07] 2025-12-15 13:45:12,768 | INFO     | --------------------------------------------------
[2025-12-15 05:46:07] 2025-12-15 13:45:12,768 | INFO     | PanDA job id: 6929531920
[2025-12-15 05:46:07] 2025-12-15 13:45:12,768 | INFO     | task id: 47886831
[2025-12-15 05:46:07] 2025-12-15 13:45:12,768 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-15 05:42:48,273 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-15 05:46:07] 2025-12-15 13:45:12,768 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | pilot state: failed 
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | transexitcode: 65
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | exeerrorcode: 65
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | exitcode: 65
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | cpuconsumptiontime: 18 s
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | nevents: 0
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | neventsw: 0
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | pid: 2723529
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | pgrp: 2723529
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | corecount: 8
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | event service: False
[2025-12-15 05:46:07] 2025-12-15 13:45:12,769 | INFO     | sizes: {0: 2283816, 1: 2284015, 11: 2284015, 14: 2284305, 22: 2284333, 82: 2307517, 83: 2307649, 84: 2311997, 86: 2312025, 215: 2312191}
[2025-12-15 05:46:07] 2025-12-15 13:45:12,770 | INFO     | --------------------------------------------------
[2025-12-15 05:46:07] 2025-12-15 13:45:12,770 | INFO     | 
[2025-12-15 05:46:07] 2025-12-15 13:45:12,770 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-15 05:46:07] 2025-12-15 13:45:13,025 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,025 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,026 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,027 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,027 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,027 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 05:46:07] 2025-12-15 13:45:13,027 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,027 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 05:46:07] 2025-12-15 13:45:13,027 | INFO     | job 6929531920 has completed (purged errors)
[2025-12-15 05:46:07] 2025-12-15 13:45:13,027 | INFO     | overall cleanup function is called
[2025-12-15 05:46:07] 2025-12-15 13:45:13,289 | INFO     | PID=2716636 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 05:46:07] 2025-12-15 13:45:13,289 | INFO     | .. there are 26 such processes running
[2025-12-15 05:46:07] 2025-12-15 13:45:14,034 | INFO     | --- collectZombieJob: --- 10, [2723529]
[2025-12-15 05:46:07] 2025-12-15 13:45:14,034 | INFO     | zombie collector waiting for pid 2723529
[2025-12-15 05:46:07] 2025-12-15 13:45:14,034 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 05:46:07] 2025-12-15 13:45:14,034 | INFO     | collected zombie processes
[2025-12-15 05:46:07] 2025-12-15 13:45:14,034 | INFO     | will attempt to kill all subprocesses of pid=2723529
[2025-12-15 05:46:07] 2025-12-15 13:45:14,866 | INFO     | process IDs to be killed: [2723529] (in reverse order)
[2025-12-15 05:46:07] 2025-12-15 13:45:15,208 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 05:46:07] 2025-12-15 13:45:15,208 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 05:46:07] 2025-12-15 13:45:15,238 | INFO     | did not find any defunct processes belonging to 2723529
[2025-12-15 05:46:07] 2025-12-15 13:45:15,246 | INFO     | did not find any defunct processes belonging to 2723529
[2025-12-15 05:46:07] 2025-12-15 13:45:15,246 | INFO     | ready for new job
[2025-12-15 05:46:07] 2025-12-15 13:45:15,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 05:46:07] 2025-12-15 13:45:15,247 | INFO     | ***************************************
[2025-12-15 05:46:07] 2025-12-15 13:45:15,248 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 05:46:07] 2025-12-15 13:45:15,248 | INFO     | ***************************************
[2025-12-15 05:46:07] 2025-12-15 13:45:15,248 | INFO     | 
[2025-12-15 05:46:07] 2025-12-15 13:45:15,249 | INFO     | architecture information:
[2025-12-15 05:46:07] 2025-12-15 13:45:15,249 | INFO     | executing command: cat /etc/os-release
[2025-12-15 05:46:07] 2025-12-15 13:45:15,263 | INFO     | cat /etc/os-release:
[2025-12-15 05:46:07] NAME="CentOS Linux"
[2025-12-15 05:46:07] VERSION="7 (Core)"
[2025-12-15 05:46:07] ID="centos"
[2025-12-15 05:46:07] ID_LIKE="rhel fedora"
[2025-12-15 05:46:07] VERSION_ID="7"
[2025-12-15 05:46:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 05:46:07] ANSI_COLOR="0;31"
[2025-12-15 05:46:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 05:46:07] HOME_URL="https://www.centos.org/"
[2025-12-15 05:46:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 05:46:07] 
[2025-12-15 05:46:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 05:46:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 05:46:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 05:46:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 05:46:07] 
[2025-12-15 05:46:07] 2025-12-15 13:45:15,263 | INFO     | ***************************************
[2025-12-15 05:46:07] 2025-12-15 13:45:15,767 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-15 05:46:07] 2025-12-15 13:45:15,780 | INFO     | sufficient remaining disk space (1374298308608 B)
[2025-12-15 05:46:07] 2025-12-15 13:45:15,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 05:46:07] 2025-12-15 13:45:15,780 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 05:46:07] 2025-12-15 13:45:15,780 | INFO     | update_server=False
[2025-12-15 05:46:07] 2025-12-15 13:45:15,780 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 05:46:07] 2025-12-15 13:45:15,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 05:46:07] 2025-12-15 13:45:15,781 | INFO     | aborting loop
[2025-12-15 05:46:07] 2025-12-15 13:45:15,906 | INFO     | all payload control threads have been joined
[2025-12-15 05:46:07] 2025-12-15 13:45:16,009 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 05:46:07] 2025-12-15 13:45:16,496 | INFO     | all data control threads have been joined
[2025-12-15 05:46:07] 2025-12-15 13:45:16,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 05:46:07] 2025-12-15 13:45:16,786 | INFO     | [job] retrieve thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:16,787 | INFO     | [job] job monitor thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:16,912 | INFO     | [payload] control thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:16,956 | INFO     | [payload] validate_post thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:17,049 | INFO     | all job control threads have been joined
[2025-12-15 05:46:07] 2025-12-15 13:45:17,462 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:17,478 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:17,502 | INFO     | [data] control thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:17,564 | INFO     | [payload] failed_post thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:17,610 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:17,778 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 05:46:07] 2025-12-15 13:45:17,963 | INFO     | [data] copytool_in thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:17,963 | INFO     | [job] validate thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:18,016 | INFO     | [data] copytool_out thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:18,055 | INFO     | [job] control thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:18,285 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:18,784 | INFO     | [job] queue monitor thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:20,790 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 05:46:07] 2025-12-15 13:45:45,810 | INFO     | PID=2716636 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 05:46:07] 2025-12-15 13:45:45,810 | INFO     | .. there are 26 such processes running
[2025-12-15 05:46:07] 2025-12-15 13:45:45,811 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 05:46:07] 2025-12-15 13:45:45,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 05:46:07] 2025-12-15 13:45:45,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 05:46:07] 2025-12-15 13:45:59,910 | INFO     | [monitor] cgroup control has ended
[2025-12-15 05:46:07] 2025-12-15 13:46:01,177 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140716461025088)>', '<ExcThread(monitor, started 140715896051456)>']
[2025-12-15 05:46:07] 2025-12-15 13:46:01,919 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 05:46:07] 2025-12-15 13:46:01,919 | INFO     | [monitor] control thread has ended
[2025-12-15 05:46:07] 2025-12-15 13:46:06,203 | INFO     | all workflow threads have been joined
[2025-12-15 05:46:07] 2025-12-15 13:46:06,203 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 05:46:07] 2025-12-15 13:46:06,203 | INFO     | traces error code: 0
[2025-12-15 05:46:07] 2025-12-15 13:46:06,204 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 05:46:07] 2025-12-15 13:46:06,707 [wrapper] ==== pilot stdout END ====
[2025-12-15 05:46:07] 2025-12-15 13:46:06,709 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 05:46:07] 2025-12-15 13:46:06,710 [wrapper] pilotpid: 2716636
[2025-12-15 05:46:07] 2025-12-15 13:46:06,712 [wrapper] Pilot exit status: 0
[2025-12-15 05:46:07] 2025-12-15 13:46:06,738 [wrapper] pandaids: 6929531920
[2025-12-15 05:46:07] 2025-12-15 13:46:06,776 [wrapper] cleanup supervisor_pilot 2716644 2716637
[2025-12-15 05:46:07] 2025-12-15 13:46:06,792 [wrapper] Test setup, not cleaning
[2025-12-15 05:46:07] 2025-12-15 13:46:06,836 [wrapper] apfmon messages muted
[2025-12-15 05:46:07] 2025-12-15 13:46:06,845 [wrapper] ==== wrapper stdout END ====
[2025-12-15 05:46:07] 2025-12-15 13:46:06,890 [wrapper] ==== wrapper stderr END ====
[2025-12-15 05:46:07]  *** Error codes and diagnostics ***
[2025-12-15 05:46:07]     "exeErrorCode": 65,
[2025-12-15 05:46:07]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-12-15 05:46:07]     "pilotErrorCode": 1305,
[2025-12-15 05:46:07]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-12-15 05:46:07]  *** Listing of results directory ***
[2025-12-15 05:46:07] total 190256
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc    579449 Dec 15 00:08 pilot3.tar.gz
[2025-12-15 05:46:07] -rwx------. 1 boinc boinc     36322 Dec 15 00:11 runpilot2-wrapper.sh
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc      5112 Dec 15 00:13 queuedata.json
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc       100 Dec 15 05:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 05:46:07] -rwxr-xr-x. 1 boinc boinc      7986 Dec 15 05:40 run_atlas
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc       105 Dec 15 05:40 job.xml
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc      6446 Dec 15 05:40 init_data.xml
[2025-12-15 05:46:07] -rw-r--r--. 2 boinc boinc 190679909 Dec 15 05:40 EVNT.47886829._000295.pool.root.1
[2025-12-15 05:46:07] -rw-r--r--. 2 boinc boinc     15847 Dec 15 05:40 start_atlas.sh
[2025-12-15 05:46:07] drwxrwx--x. 2 boinc boinc      4096 Dec 15 05:40 shared
[2025-12-15 05:46:07] -rw-r--r--. 2 boinc boinc    592411 Dec 15 05:40 input.tar.gz
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc         0 Dec 15 05:40 boinc_lockfile
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc      2538 Dec 15 05:40 pandaJob.out
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc    991020 Dec 15 05:40 agis_schedconf.cvmfs.json
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc   1516240 Dec 15 05:40 agis_ddmendpoints.agis.ALL.json
[2025-12-15 05:46:07] drwx------. 5 boinc boinc      4096 Dec 15 05:41 pilot3
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc       524 Dec 15 05:42 boinc_task_state.xml
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc       948 Dec 15 05:42 memory_monitor_summary.json
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc     21831 Dec 15 05:43 log.47886831._007484.job.log.tgz.1
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc        95 Dec 15 05:44 pilot_heartbeat.json
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc      8363 Dec 15 05:45 heartbeat.json
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc      4823 Dec 15 05:46 pilotlog.txt
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc      8192 Dec 15 05:46 boinc_mmap_file
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc     91886 Dec 15 05:46 log.47886831._007484.job.log.1
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc       188 Dec 15 05:46 output.list
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc       620 Dec 15 05:46 runtime_log
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc    133120 Dec 15 05:46 result.tar.gz
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc        23 Dec 15 05:46 wrapper_checkpoint.txt
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc      8634 Dec 15 05:46 runtime_log.err
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc       644 Dec 15 05:46 dQgNDmKrIp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwaXKDmUTzuzn.diag
[2025-12-15 05:46:07] -rw-r--r--. 1 boinc boinc     21929 Dec 15 05:46 stderr.txt
[2025-12-15 05:46:07] No HITS result produced
[2025-12-15 05:46:07]  *** Contents of shared directory: ***
[2025-12-15 05:46:07] total 186944
[2025-12-15 05:46:07] -rw-r--r--. 2 boinc boinc 190679909 Dec 15 05:40 ATLAS.root_0
[2025-12-15 05:46:07] -rw-r--r--. 2 boinc boinc     15847 Dec 15 05:40 start_atlas.sh
[2025-12-15 05:46:07] -rw-r--r--. 2 boinc boinc    592411 Dec 15 05:40 input.tar.gz
[2025-12-15 05:46:07] -rw-------. 1 boinc boinc    133120 Dec 15 05:46 result.tar.gz
05:46:09 (2708555): run_atlas exited; CPU time 28.363704
05:46:09 (2708555): called boinc_finish(0)

</stderr_txt>
]]>

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