Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:58:48 (948280): wrapper (7.7.26015): starting
00:58:48 (948280): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 00:58:48] Arguments: --nthreads 4
[2025-12-16 00:58:48] Threads: 4
[2025-12-16 00:58:48] Checking for CVMFS
[2025-12-16 00:58:48] No cvmfs_config command found, will try listing directly
[2025-12-16 00:58:48] CVMFS is ok
[2025-12-16 00:58:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 00:58:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 00:58:48] Further information can be found at the LHC@home message board.
[2025-12-16 00:58:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 00:58:48] Checking for apptainer binary...
[2025-12-16 00:58:48] which: no apptainer in ((null))
[2025-12-16 00:58:48] apptainer is not installed, using version from CVMFS
[2025-12-16 00:58:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 00:58:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-12-16 00:58:49] apptainer works
[2025-12-16 00:58:49] Set ATHENA_PROC_NUMBER=4
[2025-12-16 00:58:49] Set ATHENA_CORE_NUMBER=4
[2025-12-16 00:58:49] Starting ATLAS job with PandaID=6931151636
[2025-12-16 00:58:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 03:41:47]  *** The last 200 lines of the pilot log: ***
[2025-12-16 03:41:47] 2025-12-16 02:36:16,381 | INFO     | monitor loop #646: job 0:6931151636 is in state 'finished'
[2025-12-16 03:41:47] 2025-12-16 02:36:16,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 03:41:47] 2025-12-16 02:36:18,332 | INFO     | time since job start (9435s) is within the limit (174528.0s)
[2025-12-16 03:41:47] 2025-12-16 02:36:18,884 | INFO     | monitor loop #647: job 0:6931151636 is in state 'finished'
[2025-12-16 03:41:47] 2025-12-16 02:36:18,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 03:41:47] 2025-12-16 02:36:20,338 | INFO     | time since job start (9437s) is within the limit (174528.0s)
[2025-12-16 03:41:47] 2025-12-16 02:36:21,388 | INFO     | monitor loop #648: job 0:6931151636 is in state 'finished'
[2025-12-16 03:41:47] 2025-12-16 02:36:21,388 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 03:41:47] 2025-12-16 02:36:21,600 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 03:41:47] 2025-12-16 02:36:21,621 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2681.6263828124997
[2025-12-16 03:41:47] 2025-12-16 02:36:21,645 | INFO     | using path: /scratch/boinc/var/slot104/slots/0/PanDA_Pilot-6931151636/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 03:41:47] 2025-12-16 02:36:21,646 | INFO     | extracted standard info from prmon json
[2025-12-16 03:41:47] 2025-12-16 02:36:21,646 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 03:41:47] 2025-12-16 02:36:21,646 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 03:41:47] 2025-12-16 02:36:21,646 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 03:41:47] 2025-12-16 02:36:21,647 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 03:41:47] 2025-12-16 02:36:21,650 | INFO     | fitting pss+swap vs Time
[2025-12-16 03:41:47] 2025-12-16 02:36:21,650 | INFO     | sum of square deviations: 1132458442.5
[2025-12-16 03:41:47] 2025-12-16 02:36:21,651 | INFO     | sum of deviations: 8232193054.500001
[2025-12-16 03:41:47] 2025-12-16 02:36:21,651 | INFO     | mean x: 1765847844.5
[2025-12-16 03:41:47] 2025-12-16 02:36:21,651 | INFO     | mean y: 2326856.772727273
[2025-12-16 03:41:47] 2025-12-16 02:36:21,651 | INFO     | intersect: -12834170991.841877
[2025-12-16 03:41:47] 2025-12-16 02:36:21,652 | INFO     | chi2: 1.339826455505872
[2025-12-16 03:41:47] 2025-12-16 02:36:21,652 | INFO     | sum of square deviations: 1025693650.0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,653 | INFO     | sum of deviations: 7823749589.999994
[2025-12-16 03:41:47] 2025-12-16 02:36:21,653 | INFO     | mean x: 1765847692.0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,653 | INFO     | mean y: 2326273.610738255
[2025-12-16 03:41:47] 2025-12-16 02:36:21,653 | INFO     | intersect: -13467144027.08522
[2025-12-16 03:41:47] 2025-12-16 02:36:21,653 | INFO     | chi2: 1.3407883585446425
[2025-12-16 03:41:47] 2025-12-16 02:36:21,653 | INFO     | current chi2=1.3407883585446425 (change=-0.07179310684735182 %)
[2025-12-16 03:41:47] 2025-12-16 02:36:21,653 | INFO     | right removable region: 148
[2025-12-16 03:41:47] 2025-12-16 02:36:21,654 | INFO     | sum of square deviations: 1025693650.0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,655 | INFO     | sum of deviations: -8996106699.0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,655 | INFO     | mean x: 1765847997.0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,655 | INFO     | mean y: 2350962.651006711
[2025-12-16 03:41:47] 2025-12-16 02:36:21,655 | INFO     | intersect: 15490169372.394924
[2025-12-16 03:41:47] 2025-12-16 02:36:21,655 | INFO     | chi2: 0.06150101994391017
[2025-12-16 03:41:47] 2025-12-16 02:36:21,655 | INFO     | current chi2=0.06150101994391017 (change=95.40977716246918 %)
[2025-12-16 03:41:47] 2025-12-16 02:36:21,655 | INFO     | sum of square deviations: 925859220.0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,656 | INFO     | sum of deviations: -5586657092.5
[2025-12-16 03:41:47] 2025-12-16 02:36:21,656 | INFO     | mean x: 1765848149.5
[2025-12-16 03:41:47] 2025-12-16 02:36:21,656 | INFO     | mean y: 2345744.451388889
[2025-12-16 03:41:47] 2025-12-16 02:36:21,656 | INFO     | intersect: 10657516504.302088
[2025-12-16 03:41:47] 2025-12-16 02:36:21,657 | INFO     | chi2: 0.04922015822713383
[2025-12-16 03:41:47] 2025-12-16 02:36:21,657 | INFO     | current chi2=0.04922015822713383 (change=19.968549672796748 %)
[2025-12-16 03:41:47] 2025-12-16 02:36:21,657 | INFO     | left removable region: 20
[2025-12-16 03:41:47] 2025-12-16 02:36:21,657 | INFO     | sum of square deviations: 650252192.0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,658 | INFO     | sum of deviations: 760635321.5
[2025-12-16 03:41:47] 2025-12-16 02:36:21,658 | INFO     | mean x: 1765848271.5
[2025-12-16 03:41:47] 2025-12-16 02:36:21,658 | INFO     | mean y: 2334313.2109375
[2025-12-16 03:41:47] 2025-12-16 02:36:21,658 | INFO     | intersect: -2063274360.2199118
[2025-12-16 03:41:47] 2025-12-16 02:36:21,658 | INFO     | chi2: 0.00018800535592449107
[2025-12-16 03:41:47] 2025-12-16 02:36:21,658 | INFO     | current memory leak: 1.17 B/s (using 128 data points, chi2=0.00)
[2025-12-16 03:41:47] 2025-12-16 02:36:21,658 | INFO     | could have reported an average CPU frequency of 2703 MHz (9 samples)
[2025-12-16 03:41:47] 2025-12-16 02:36:21,659 | INFO     | ..............................
[2025-12-16 03:41:47] 2025-12-16 02:36:21,659 | INFO     | . Timing measurements:
[2025-12-16 03:41:47] 2025-12-16 02:36:21,659 | INFO     | . get job = 0 s
[2025-12-16 03:41:47] 2025-12-16 02:36:21,659 | INFO     | . initial setup = 1 s
[2025-12-16 03:41:47] 2025-12-16 02:36:21,659 | INFO     | . payload setup = 9 s
[2025-12-16 03:41:47] 2025-12-16 02:36:21,659 | INFO     | . stage-in = 0 s
[2025-12-16 03:41:47] 2025-12-16 02:36:21,659 | INFO     | . payload execution = 9396 s
[2025-12-16 03:41:47] 2025-12-16 02:36:21,659 | INFO     | . stage-out = 0 s
[2025-12-16 03:41:47] 2025-12-16 02:36:21,659 | INFO     | . log creation = 0 s
[2025-12-16 03:41:47] 2025-12-16 02:36:21,659 | INFO     | ..............................
[2025-12-16 03:41:47] 2025-12-16 02:36:21,755 | INFO     | 
[2025-12-16 03:41:47] 2025-12-16 02:36:21,755 | INFO     | job summary report
[2025-12-16 03:41:47] 2025-12-16 02:36:21,755 | INFO     | --------------------------------------------------
[2025-12-16 03:41:47] 2025-12-16 02:36:21,755 | INFO     | PanDA job id: 6931151636
[2025-12-16 03:41:47] 2025-12-16 02:36:21,755 | INFO     | task id: 47898896
[2025-12-16 03:41:47] 2025-12-16 02:36:21,755 | INFO     | errors: (none)
[2025-12-16 03:41:47] 2025-12-16 02:36:21,755 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 03:41:47] 2025-12-16 02:36:21,755 | INFO     | pilot state: finished 
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | transexitcode: 0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | exeerrorcode: 0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | exeerrordiag: 
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | exitcode: 0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | exitmsg: OK
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | cpuconsumptiontime: 35974 s
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | nevents: 400
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | neventsw: 0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | pid: 970996
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | pgrp: 970996
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | corecount: 4
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | event service: False
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | sizes: {0: 2283790, 1: 2283989, 8: 2284251, 11: 2284279, 9409: 2312959, 9411: 2321981, 9413: 2322165, 9420: 2322423}
[2025-12-16 03:41:47] 2025-12-16 02:36:21,756 | INFO     | --------------------------------------------------
[2025-12-16 03:41:47] 2025-12-16 02:36:21,757 | INFO     | 
[2025-12-16 03:41:47] 2025-12-16 02:36:21,757 | INFO     | executing command: ls -lF /scratch/boinc/var/slot104/slots/0
[2025-12-16 03:41:47] 2025-12-16 02:36:21,787 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,788 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,788 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,788 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,788 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,788 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,788 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,788 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,788 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,788 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,789 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,789 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,789 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,789 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,789 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,789 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,789 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 03:41:47] 2025-12-16 02:36:21,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,789 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 03:41:47] 2025-12-16 02:36:21,790 | INFO     | job 6931151636 has completed (purged errors)
[2025-12-16 03:41:47] 2025-12-16 02:36:21,790 | INFO     | overall cleanup function is called
[2025-12-16 03:41:47] 2025-12-16 02:36:22,796 | INFO     | --- collectZombieJob: --- 10, [970996]
[2025-12-16 03:41:47] 2025-12-16 02:36:22,796 | INFO     | zombie collector waiting for pid 970996
[2025-12-16 03:41:47] 2025-12-16 02:36:22,796 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 03:41:47] 2025-12-16 02:36:22,796 | INFO     | collected zombie processes
[2025-12-16 03:41:47] 2025-12-16 02:36:22,796 | INFO     | will attempt to kill all subprocesses of pid=970996
[2025-12-16 03:41:47] 2025-12-16 02:36:23,515 | INFO     | process IDs to be killed: [970996] (in reverse order)
[2025-12-16 03:41:47] 2025-12-16 02:36:23,777 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 03:41:47] 2025-12-16 02:36:23,778 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 03:41:47] 2025-12-16 02:36:23,811 | INFO     | did not find any defunct processes belonging to 970996
[2025-12-16 03:41:47] 2025-12-16 02:36:23,843 | INFO     | did not find any defunct processes belonging to 970996
[2025-12-16 03:41:47] 2025-12-16 02:36:23,844 | INFO     | ready for new job
[2025-12-16 03:41:47] 2025-12-16 02:36:23,844 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 03:41:47] 2025-12-16 02:36:23,846 | INFO     | ***************************************
[2025-12-16 03:41:47] 2025-12-16 02:36:23,846 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 03:41:47] 2025-12-16 02:36:23,846 | INFO     | ***************************************
[2025-12-16 03:41:47] 2025-12-16 02:36:23,846 | INFO     | 
[2025-12-16 03:41:47] 2025-12-16 02:36:23,854 | INFO     | architecture information:
[2025-12-16 03:41:47] 2025-12-16 02:36:23,855 | INFO     | executing command: cat /etc/os-release
[2025-12-16 03:41:47] 2025-12-16 02:36:23,877 | INFO     | cat /etc/os-release:
[2025-12-16 03:41:47] NAME="CentOS Linux"
[2025-12-16 03:41:47] VERSION="7 (Core)"
[2025-12-16 03:41:47] ID="centos"
[2025-12-16 03:41:47] ID_LIKE="rhel fedora"
[2025-12-16 03:41:47] VERSION_ID="7"
[2025-12-16 03:41:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 03:41:47] ANSI_COLOR="0;31"
[2025-12-16 03:41:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 03:41:47] HOME_URL="https://www.centos.org/"
[2025-12-16 03:41:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 03:41:47] 
[2025-12-16 03:41:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 03:41:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 03:41:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 03:41:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 03:41:47] 
[2025-12-16 03:41:47] 2025-12-16 02:36:23,880 | INFO     | ***************************************
[2025-12-16 03:41:47] 2025-12-16 02:36:24,383 | INFO     | executing command: df -mP /scratch/boinc/var/slot104/slots/0
[2025-12-16 03:41:47] 2025-12-16 02:36:24,407 | INFO     | sufficient remaining disk space (3281185144832 B)
[2025-12-16 03:41:47] 2025-12-16 02:36:24,407 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 03:41:47] 2025-12-16 02:36:24,407 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 03:41:47] 2025-12-16 02:36:24,407 | INFO     | update_server=False
[2025-12-16 03:41:47] 2025-12-16 02:36:24,408 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 03:41:47] 2025-12-16 02:36:24,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 03:41:47] 2025-12-16 02:36:24,893 | INFO     | aborting loop
[2025-12-16 03:41:47] 2025-12-16 02:36:24,893 | INFO     | all data control threads have been joined
[2025-12-16 03:41:47] 2025-12-16 02:36:25,301 | INFO     | all payload control threads have been joined
[2025-12-16 03:41:47] 2025-12-16 02:36:25,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 03:41:47] 2025-12-16 02:36:25,413 | INFO     | [job] retrieve thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:25,479 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 03:41:47] 2025-12-16 02:36:25,498 | INFO     | all job control threads have been joined
[2025-12-16 03:41:47] 2025-12-16 02:36:25,628 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:25,899 | INFO     | [data] control thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:25,899 | INFO     | [job] job monitor thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:26,034 | INFO     | [data] copytool_in thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:26,306 | INFO     | [payload] control thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:26,354 | INFO     | [job] validate thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:26,504 | INFO     | [job] control thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:26,629 | INFO     | [payload] validate_post thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:26,690 | INFO     | [payload] failed_post thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:26,728 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:26,728 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:26,765 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 03:41:47] 2025-12-16 02:36:27,396 | INFO     | [data] copytool_out thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:27,770 | INFO     | [job] queue monitor thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:29,485 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:35,418 | INFO     | job.realtimelogging is not enabled
[2025-12-16 03:41:47] 2025-12-16 02:36:36,423 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 03:41:47] 2025-12-16 02:36:54,257 | INFO     | PID=956219 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 03:41:47] 2025-12-16 02:36:54,257 | INFO     | .. there are 8 such processes running
[2025-12-16 03:41:47] 2025-12-16 02:36:54,257 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 03:41:47] 2025-12-16 02:36:54,258 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 03:41:47] 2025-12-16 02:36:54,258 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 03:41:47] 2025-12-16 02:37:18,724 | INFO     | [monitor] cgroup control has ended
[2025-12-16 03:41:47] 2025-12-16 02:37:18,814 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22650303817536)>', '<ExcThread(monitor, started 22650065749760)>']
[2025-12-16 03:41:47] 2025-12-16 02:37:19,378 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 03:41:47] 2025-12-16 02:37:19,378 | INFO     | [monitor] control thread has ended
[2025-12-16 03:41:47] 2025-12-16 02:37:23,839 | INFO     | all workflow threads have been joined
[2025-12-16 03:41:47] 2025-12-16 02:37:23,839 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 03:41:47] 2025-12-16 02:37:23,840 | INFO     | traces error code: 0
[2025-12-16 03:41:47] 2025-12-16 02:37:23,840 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 03:41:47] 2025-12-16 02:37:23,984 [wrapper] ==== pilot stdout END ====
[2025-12-16 03:41:47] 2025-12-16 02:37:23,988 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 03:41:47] 2025-12-16 02:37:23,991 [wrapper] pilotpid: 956219
[2025-12-16 03:41:47] 2025-12-16 02:37:23,995 [wrapper] Pilot exit status: 0
[2025-12-16 03:41:47] 2025-12-16 02:37:24,011 [wrapper] pandaids: 6931151636
[2025-12-16 03:41:47] 2025-12-16 02:37:24,174 [wrapper] cleanup supervisor_pilot 1299453 956220
[2025-12-16 03:41:47] 2025-12-16 02:37:24,179 [wrapper] Test setup, not cleaning
[2025-12-16 03:41:47] 2025-12-16 02:37:24,184 [wrapper] apfmon messages muted
[2025-12-16 03:41:47] 2025-12-16 02:37:24,189 [wrapper] ==== wrapper stdout END ====
[2025-12-16 03:41:47] 2025-12-16 02:37:24,193 [wrapper] ==== wrapper stderr END ====
[2025-12-16 03:41:47]  *** Error codes and diagnostics ***
[2025-12-16 03:41:47]     "exeErrorCode": 0,
[2025-12-16 03:41:47]     "exeErrorDiag": "",
[2025-12-16 03:41:47]     "pilotErrorCode": 0,
[2025-12-16 03:41:47]     "pilotErrorDiag": "",
[2025-12-16 03:41:47]  *** Listing of results directory ***
[2025-12-16 03:41:47] total 386292
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc    579449 Dec 15 02:16 pilot3.tar.gz
[2025-12-16 03:41:47] -rwx------ 1 boinc boinc     36322 Dec 15 02:19 runpilot2-wrapper.sh
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc      5112 Dec 15 02:22 queuedata.json
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc       100 Dec 16 00:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 03:41:47] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 00:58 run_atlas
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc       105 Dec 16 00:58 job.xml
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc      6691 Dec 16 00:58 init_data.xml
[2025-12-16 03:41:47] -rw-r--r-- 2 boinc boinc 201072224 Dec 16 00:58 EVNT.47898894._000062.pool.root.1
[2025-12-16 03:41:47] -rw-r--r-- 2 boinc boinc     15847 Dec 16 00:58 start_atlas.sh
[2025-12-16 03:41:47] drwxrwx--x 2 boinc boinc      4096 Dec 16 00:58 shared
[2025-12-16 03:41:47] -rw-r--r-- 2 boinc boinc    592397 Dec 16 00:58 input.tar.gz
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc         0 Dec 16 00:58 boinc_lockfile
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc      2506 Dec 16 00:58 pandaJob.out
[2025-12-16 03:41:47] -rw------- 1 boinc boinc    994555 Dec 16 00:59 agis_schedconf.cvmfs.json
[2025-12-16 03:41:47] -rw------- 1 boinc boinc   1516240 Dec 16 00:59 agis_ddmendpoints.agis.ALL.json
[2025-12-16 03:41:47] drwx------ 5 boinc boinc      4096 Dec 16 00:59 pilot3
[2025-12-16 03:41:47] -rw------- 1 boinc boinc 187268504 Dec 16 03:35 HITS.47898896._001538.pool.root.1
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc       529 Dec 16 03:35 boinc_task_state.xml
[2025-12-16 03:41:47] -rw------- 1 boinc boinc      1034 Dec 16 03:36 memory_monitor_summary.json
[2025-12-16 03:41:47] -rw------- 1 boinc boinc    330466 Dec 16 03:36 log.47898896._001538.job.log.tgz.1
[2025-12-16 03:41:47] -rw------- 1 boinc boinc        95 Dec 16 03:36 pilot_heartbeat.json
[2025-12-16 03:41:47] -rw------- 1 boinc boinc      7797 Dec 16 03:36 heartbeat.json
[2025-12-16 03:41:47] -rw------- 1 boinc boinc      4906 Dec 16 03:37 pilotlog.txt
[2025-12-16 03:41:47] -rw------- 1 boinc boinc   1323204 Dec 16 03:37 log.47898896._001538.job.log.1
[2025-12-16 03:41:47] -rw------- 1 boinc boinc       357 Dec 16 03:37 output.list
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc       620 Dec 16 03:37 runtime_log
[2025-12-16 03:41:47] -rw------- 1 boinc boinc   1669120 Dec 16 03:37 result.tar.gz
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc      9222 Dec 16 03:37 runtime_log.err
[2025-12-16 03:41:47] -rw------- 1 boinc boinc       663 Dec 16 03:37 jXOKDmvQCp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAaSKDmAcsTRm.diag
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc        26 Dec 16 03:41 wrapper_checkpoint.txt
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc      8192 Dec 16 03:41 boinc_mmap_file
[2025-12-16 03:41:47] -rw-r--r-- 1 boinc boinc     21085 Dec 16 03:41 stderr.txt
[2025-12-16 03:41:47] HITS file was successfully produced:
[2025-12-16 03:41:47] -rw------- 1 boinc boinc 187268504 Dec 16 03:35 shared/HITS.pool.root.1
[2025-12-16 03:41:47]  *** Contents of shared directory: ***
[2025-12-16 03:41:47] total 381476
[2025-12-16 03:41:47] -rw-r--r-- 2 boinc boinc 201072224 Dec 16 00:58 ATLAS.root_0
[2025-12-16 03:41:47] -rw-r--r-- 2 boinc boinc     15847 Dec 16 00:58 start_atlas.sh
[2025-12-16 03:41:47] -rw-r--r-- 2 boinc boinc    592397 Dec 16 00:58 input.tar.gz
[2025-12-16 03:41:47] -rw------- 1 boinc boinc 187268504 Dec 16 03:35 HITS.pool.root.1
[2025-12-16 03:41:47] -rw------- 1 boinc boinc   1669120 Dec 16 03:37 result.tar.gz
03:41:48 (948280): run_atlas exited; CPU time 36574.378705
03:41:48 (948280): called boinc_finish(0)

</stderr_txt>
]]>

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