Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:05:46 (977803): wrapper (7.7.26015): starting
12:05:46 (977803): wrapper: running run_atlas (--nthreads 4)
[2025-12-15 12:05:46] Arguments: --nthreads 4
[2025-12-15 12:05:46] Threads: 4
[2025-12-15 12:05:46] Checking for CVMFS
[2025-12-15 12:05:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 12:05:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 12:05:46] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 12:05:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 12:05:46] 2.9.2.0 589042 116 65848 154029 3 186 19379734 36864000 0 130560 0 1030668 99.998 5600 174 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 12:05:46] CVMFS is ok
[2025-12-15 12:05:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 12:05:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 12:05:46] Further information can be found at the LHC@home message board.
[2025-12-15 12:05:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 12:05:46] Checking for apptainer binary...
[2025-12-15 12:05:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 12:05:46] Running /usr/bin/apptainer --version
[2025-12-15 12:05:46] apptainer version 1.4.1-1.1
[2025-12-15 12:05:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 12:05:46] thA325
[2025-12-15 12:05:46] apptainer works
[2025-12-15 12:05:46] Set ATHENA_PROC_NUMBER=4
[2025-12-15 12:05:46] Set ATHENA_CORE_NUMBER=4
[2025-12-15 12:05:46] Starting ATLAS job with PandaID=6931147306
[2025-12-15 12:05:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 12:10:14]  *** The last 200 lines of the pilot log: ***
[2025-12-15 12:10:14] 2025-12-15 11:09:06,918 | INFO     | all data control threads have been joined
[2025-12-15 12:10:14] 2025-12-15 11:09:07,000 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 12:10:14] 2025-12-15 11:09:07,419 | INFO     | [job] retrieve thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:07,419 | INFO     | [job] queue monitor thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:07,419 | INFO     | [job] job monitor thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:07,510 | INFO     | [payload] failed_post thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:07,515 | INFO     | [data] copytool_in thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:07,536 | INFO     | all payload control threads have been joined
[2025-12-15 12:10:14] 2025-12-15 11:09:07,716 | INFO     | all job control threads have been joined
[2025-12-15 12:10:14] 2025-12-15 11:09:07,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 12:10:14] 2025-12-15 11:09:07,923 | INFO     | [data] control thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:07,973 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:08,011 | INFO     | [payload] validate_post thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:08,542 | INFO     | [payload] control thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:08,604 | INFO     | [job] validate thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:08,702 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:08,721 | INFO     | [job] control thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:08,742 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:08,793 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:09,006 | INFO     | [data] copytool_out thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:11,790 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 12:10:14] 2025-12-15 11:09:54,938 | INFO     | [monitor] cgroup control has ended
[2025-12-15 12:10:14] 2025-12-15 11:09:55,806 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269517584192)>', '<ExcThread(monitor, started 140268061849344)>']
[2025-12-15 12:10:14] 2025-12-15 11:09:56,673 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 12:10:14] 2025-12-15 11:09:56,673 | INFO     | [monitor] control thread has ended
[2025-12-15 12:10:14] 2025-12-15 11:10:00,832 | INFO     | all workflow threads have been joined
[2025-12-15 12:10:14] 2025-12-15 11:10:00,832 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 12:10:14] 2025-12-15 11:10:00,832 | INFO     | traces error code: 0
[2025-12-15 12:10:14] 2025-12-15 11:10:00,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 12:10:14] 2025-12-15 11:10:14,244 [wrapper] ==== pilot stdout END ====
[2025-12-15 12:10:14] 2025-12-15 11:10:14,248 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 12:10:14] 2025-12-15 11:10:14,252 [wrapper] pilotpid: 981597
[2025-12-15 12:10:14] 2025-12-15 11:10:14,255 [wrapper] Pilot exit status: 0
[2025-12-15 12:10:14] 2025-12-15 11:10:14,265 [wrapper] pandaids: 6931147306
[2025-12-15 12:10:14] 2025-12-15 11:10:14,289 [wrapper] cleanup supervisor_pilot  981603 981598
[2025-12-15 12:10:14] 2025-12-15 11:10:14,293 [wrapper] Test setup, not cleaning
[2025-12-15 12:10:14] 2025-12-15 11:10:14,297 [wrapper] apfmon messages muted
[2025-12-15 12:10:14] 2025-12-15 11:10:14,301 [wrapper] ==== wrapper stdout END ====
[2025-12-15 12:10:14] 2025-12-15 11:10:14,304 [wrapper] ==== wrapper stderr END ====
[2025-12-15 12:10:14]  *** Error codes and diagnostics ***
[2025-12-15 12:10:14]     "exeErrorCode": 65,
[2025-12-15 12:10:14]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-15 12:10:14]     "pilotErrorCode": 1305,
[2025-12-15 12:10:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-15 12:10:14]  *** Listing of results directory ***
[2025-12-15 12:10:14] total 196900
[2025-12-15 12:10:14] -rwx------ 1 boinc boinc     36322 Dec 15 02:16 runpilot2-wrapper.sh
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc      5112 Dec 15 02:16 queuedata.json
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc    579449 Dec 15 02:16 pilot3.tar.gz
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc       100 Dec 15 12:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 12:10:14] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 12:05 run_atlas
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc       105 Dec 15 12:05 job.xml
[2025-12-15 12:10:14] -rw-r--r-- 2 boinc boinc 197486557 Dec 15 12:05 EVNT.47898894._000016.pool.root.1
[2025-12-15 12:10:14] -rw-r--r-- 2 boinc boinc    592395 Dec 15 12:05 input.tar.gz
[2025-12-15 12:10:14] -rw-r--r-- 2 boinc boinc     15847 Dec 15 12:05 start_atlas.sh
[2025-12-15 12:10:14] drwxrwx--x 2 boinc boinc      4096 Dec 15 12:05 shared
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc         0 Dec 15 12:05 boinc_setup_complete
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc      6368 Dec 15 12:05 init_data.xml
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc         0 Dec 15 12:05 boinc_lockfile
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc      2503 Dec 15 12:05 pandaJob.out
[2025-12-15 12:10:14] -rw------- 1 boinc boinc    990996 Dec 15 12:05 agis_schedconf.cvmfs.json
[2025-12-15 12:10:14] -rw------- 1 boinc boinc   1516240 Dec 15 12:05 agis_ddmendpoints.agis.ALL.json
[2025-12-15 12:10:14] drwx------ 5 boinc boinc      4096 Dec 15 12:05 pilot3
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc       523 Dec 15 12:06 boinc_task_state.xml
[2025-12-15 12:10:14] -rw------- 1 boinc boinc       976 Dec 15 12:06 memory_monitor_summary.json
[2025-12-15 12:10:14] -rw------- 1 boinc boinc     34166 Dec 15 12:07 log.47898896._000741.job.log.tgz.1
[2025-12-15 12:10:14] -rw------- 1 boinc boinc        95 Dec 15 12:08 pilot_heartbeat.json
[2025-12-15 12:10:14] -rw------- 1 boinc boinc      8425 Dec 15 12:09 heartbeat.json
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc      8192 Dec 15 12:09 boinc_mmap_file
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc        23 Dec 15 12:09 wrapper_checkpoint.txt
[2025-12-15 12:10:14] -rw------- 1 boinc boinc      4556 Dec 15 12:10 pilotlog.txt
[2025-12-15 12:10:14] -rw------- 1 boinc boinc     85681 Dec 15 12:10 log.47898896._000741.job.log.1
[2025-12-15 12:10:14] -rw------- 1 boinc boinc       188 Dec 15 12:10 output.list
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc       620 Dec 15 12:10 runtime_log
[2025-12-15 12:10:14] -rw------- 1 boinc boinc    143360 Dec 15 12:10 result.tar.gz
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc      8744 Dec 15 12:10 runtime_log.err
[2025-12-15 12:10:14] -rw------- 1 boinc boinc       648 Dec 15 12:10 E7zMDmeNCp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtjWKDmTAQanm.diag
[2025-12-15 12:10:14] -rw-r--r-- 1 boinc boinc      6525 Dec 15 12:10 stderr.txt
[2025-12-15 12:10:14] No HITS result produced
[2025-12-15 12:10:14]  *** Contents of shared directory: ***
[2025-12-15 12:10:14] total 193600
[2025-12-15 12:10:14] -rw-r--r-- 2 boinc boinc 197486557 Dec 15 12:05 ATLAS.root_0
[2025-12-15 12:10:14] -rw-r--r-- 2 boinc boinc    592395 Dec 15 12:05 input.tar.gz
[2025-12-15 12:10:14] -rw-r--r-- 2 boinc boinc     15847 Dec 15 12:05 start_atlas.sh
[2025-12-15 12:10:14] -rw------- 1 boinc boinc    143360 Dec 15 12:10 result.tar.gz
12:10:15 (977803): run_atlas exited; CPU time 27.923757
12:10:15 (977803): called boinc_finish(0)

</stderr_txt>
]]>

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