Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:42:30 (875577): wrapper (7.7.26015): starting
11:42:30 (875577): wrapper: running run_atlas (--nthreads 4)
[2025-12-15 11:42:30] Arguments: --nthreads 4
[2025-12-15 11:42:30] Threads: 4
[2025-12-15 11:42:30] Checking for CVMFS
[2025-12-15 11:42:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 11:42:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 11:42:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 11:42:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 11:42:30] 2.9.2.0 589042 93 64228 154029 2 186 19379474 36864000 0 130560 0 759446 99.998 5596 186 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 11:42:30] CVMFS is ok
[2025-12-15 11:42:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 11:42:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 11:42:30] Further information can be found at the LHC@home message board.
[2025-12-15 11:42:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 11:42:30] Checking for apptainer binary...
[2025-12-15 11:42:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 11:42:30] Running /usr/bin/apptainer --version
[2025-12-15 11:42:30] apptainer version 1.4.1-1.1
[2025-12-15 11:42:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 11:42:31] thA325
[2025-12-15 11:42:31] apptainer works
[2025-12-15 11:42:31] Set ATHENA_PROC_NUMBER=4
[2025-12-15 11:42:31] Set ATHENA_CORE_NUMBER=4
[2025-12-15 11:42:31] Starting ATLAS job with PandaID=6929525757
[2025-12-15 11:42:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 11:46:46]  *** The last 200 lines of the pilot log: ***
[2025-12-15 11:46:46] 2025-12-15 10:45:44,173 | INFO     | ***************************************
[2025-12-15 11:46:46] 2025-12-15 10:45:44,676 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 11:46:46] 2025-12-15 10:45:44,695 | INFO     | sufficient remaining disk space (242109906944 B)
[2025-12-15 11:46:46] 2025-12-15 10:45:44,695 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 11:46:46] 2025-12-15 10:45:44,695 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 11:46:46] 2025-12-15 10:45:44,695 | INFO     | update_server=False
[2025-12-15 11:46:46] 2025-12-15 10:45:44,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 11:46:46] 2025-12-15 10:45:44,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 11:46:46] 2025-12-15 10:45:44,696 | INFO     | aborting loop
[2025-12-15 11:46:46] 2025-12-15 10:45:44,696 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 11:46:46] 2025-12-15 10:45:45,278 | INFO     | all job control threads have been joined
[2025-12-15 11:46:46] 2025-12-15 10:45:45,300 | INFO     | all data control threads have been joined
[2025-12-15 11:46:46] 2025-12-15 10:45:45,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 11:46:46] 2025-12-15 10:45:45,504 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 11:46:46] 2025-12-15 10:45:45,701 | INFO     | [job] retrieve thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:45,701 | INFO     | [job] job monitor thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:45,702 | INFO     | [job] queue monitor thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:45,780 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:45,996 | INFO     | [data] copytool_in thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:46,017 | INFO     | [payload] validate_post thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:46,116 | INFO     | all payload control threads have been joined
[2025-12-15 11:46:46] 2025-12-15 10:45:46,284 | INFO     | [job] control thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:46,306 | INFO     | [data] control thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:46,325 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:46,607 | INFO     | [payload] failed_post thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:46,886 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:47,091 | INFO     | [job] validate thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:47,122 | INFO     | [payload] control thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:47,200 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:47,510 | INFO     | [data] copytool_out thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:45:49,492 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 11:46:46] 2025-12-15 10:46:15,715 | INFO     | PID=879360 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-15 11:46:46] 2025-12-15 10:46:15,715 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 11:46:46] 2025-12-15 10:46:15,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 11:46:46] 2025-12-15 10:46:15,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 11:46:46] 2025-12-15 10:46:40,852 | INFO     | [monitor] cgroup control has ended
[2025-12-15 11:46:46] 2025-12-15 10:46:40,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140103788062528)>', '<ExcThread(monitor, started 140102546212608)>']
[2025-12-15 11:46:46] 2025-12-15 10:46:41,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 11:46:46] 2025-12-15 10:46:41,855 | INFO     | [monitor] control thread has ended
[2025-12-15 11:46:46] 2025-12-15 10:46:45,906 | INFO     | all workflow threads have been joined
[2025-12-15 11:46:46] 2025-12-15 10:46:45,907 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 11:46:46] 2025-12-15 10:46:45,907 | INFO     | traces error code: 0
[2025-12-15 11:46:46] 2025-12-15 10:46:45,907 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 11:46:46] 2025-12-15 10:46:45,976 [wrapper] ==== pilot stdout END ====
[2025-12-15 11:46:46] 2025-12-15 10:46:45,979 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 11:46:46] 2025-12-15 10:46:45,983 [wrapper] pilotpid: 879360
[2025-12-15 11:46:46] 2025-12-15 10:46:45,986 [wrapper] Pilot exit status: 0
[2025-12-15 11:46:46] 2025-12-15 10:46:45,997 [wrapper] pandaids: 6929525757
[2025-12-15 11:46:46] 2025-12-15 10:46:46,019 [wrapper] cleanup supervisor_pilot  879366 879361
[2025-12-15 11:46:46] 2025-12-15 10:46:46,022 [wrapper] Test setup, not cleaning
[2025-12-15 11:46:46] 2025-12-15 10:46:46,026 [wrapper] apfmon messages muted
[2025-12-15 11:46:46] 2025-12-15 10:46:46,029 [wrapper] ==== wrapper stdout END ====
[2025-12-15 11:46:46] 2025-12-15 10:46:46,032 [wrapper] ==== wrapper stderr END ====
[2025-12-15 11:46:46]  *** Error codes and diagnostics ***
[2025-12-15 11:46:46]     "exeErrorCode": 65,
[2025-12-15 11:46:46]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-15 11:46:46]     "pilotErrorCode": 1305,
[2025-12-15 11:46:46]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-15 11:46:46]  *** Listing of results directory ***
[2025-12-15 11:46:46] total 223296
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc    579449 Dec 15 06:25 pilot3.tar.gz
[2025-12-15 11:46:46] -rwx------ 1 boinc boinc     36322 Dec 15 06:26 runpilot2-wrapper.sh
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc      5112 Dec 15 06:27 queuedata.json
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc       100 Dec 15 11:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 11:46:46] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 11:42 run_atlas
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc       105 Dec 15 11:42 job.xml
[2025-12-15 11:46:46] -rw-r--r-- 2 boinc boinc 224517594 Dec 15 11:42 EVNT.47898761._000629.pool.root.1
[2025-12-15 11:46:46] -rw-r--r-- 2 boinc boinc    592398 Dec 15 11:42 input.tar.gz
[2025-12-15 11:46:46] -rw-r--r-- 2 boinc boinc     15847 Dec 15 11:42 start_atlas.sh
[2025-12-15 11:46:46] drwxrwx--x 2 boinc boinc      4096 Dec 15 11:42 shared
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc         0 Dec 15 11:42 boinc_setup_complete
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc      6368 Dec 15 11:42 init_data.xml
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc         0 Dec 15 11:42 boinc_lockfile
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc      2508 Dec 15 11:42 pandaJob.out
[2025-12-15 11:46:46] -rw------- 1 boinc boinc    990996 Dec 15 11:42 agis_schedconf.cvmfs.json
[2025-12-15 11:46:46] -rw------- 1 boinc boinc   1516240 Dec 15 11:42 agis_ddmendpoints.agis.ALL.json
[2025-12-15 11:46:46] drwx------ 5 boinc boinc      4096 Dec 15 11:42 pilot3
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc       524 Dec 15 11:43 boinc_task_state.xml
[2025-12-15 11:46:46] -rw------- 1 boinc boinc       954 Dec 15 11:43 memory_monitor_summary.json
[2025-12-15 11:46:46] -rw------- 1 boinc boinc     33901 Dec 15 11:43 log.47898763._014469.job.log.tgz.1
[2025-12-15 11:46:46] -rw------- 1 boinc boinc        95 Dec 15 11:45 pilot_heartbeat.json
[2025-12-15 11:46:46] -rw------- 1 boinc boinc      8375 Dec 15 11:45 heartbeat.json
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc      8192 Dec 15 11:46 boinc_mmap_file
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc        23 Dec 15 11:46 wrapper_checkpoint.txt
[2025-12-15 11:46:46] -rw------- 1 boinc boinc      4751 Dec 15 11:46 pilotlog.txt
[2025-12-15 11:46:46] -rw------- 1 boinc boinc     84918 Dec 15 11:46 log.47898763._014469.job.log.1
[2025-12-15 11:46:46] -rw------- 1 boinc boinc       188 Dec 15 11:46 output.list
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc       620 Dec 15 11:46 runtime_log
[2025-12-15 11:46:46] -rw------- 1 boinc boinc    143360 Dec 15 11:46 result.tar.gz
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc      8744 Dec 15 11:46 runtime_log.err
[2025-12-15 11:46:46] -rw------- 1 boinc boinc       648 Dec 15 11:46 QBUNDmxHGp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzwSKDmkWmQSn.diag
[2025-12-15 11:46:46] -rw-r--r-- 1 boinc boinc      8174 Dec 15 11:46 stderr.txt
[2025-12-15 11:46:46] No HITS result produced
[2025-12-15 11:46:46]  *** Contents of shared directory: ***
[2025-12-15 11:46:46] total 219996
[2025-12-15 11:46:46] -rw-r--r-- 2 boinc boinc 224517594 Dec 15 11:42 ATLAS.root_0
[2025-12-15 11:46:46] -rw-r--r-- 2 boinc boinc    592398 Dec 15 11:42 input.tar.gz
[2025-12-15 11:46:46] -rw-r--r-- 2 boinc boinc     15847 Dec 15 11:42 start_atlas.sh
[2025-12-15 11:46:46] -rw------- 1 boinc boinc    143360 Dec 15 11:46 result.tar.gz
11:46:48 (875577): run_atlas exited; CPU time 28.111320
11:46:48 (875577): called boinc_finish(0)

</stderr_txt>
]]>

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