Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:26:57 (23637): wrapper (7.7.26015): starting
05:26:57 (23637): wrapper: running run_atlas (--nthreads 12)
[2025-12-15 05:26:57] Arguments: --nthreads 12
[2025-12-15 05:26:57] Threads: 12
[2025-12-15 05:26:57] Checking for CVMFS
[2025-12-15 05:26:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 05:26:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 05:26:57] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 05:26:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 05:26:57] 2.11.2.0 22587 29462 90708 154029 3 56 13205478 20275200 1 130560 0 10613570 99.902 1881354 41299 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-15 05:26:57] CVMFS is ok
[2025-12-15 05:26:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 05:26:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 05:26:57] Further information can be found at the LHC@home message board.
[2025-12-15 05:26:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 05:26:57] Checking for apptainer binary...
[2025-12-15 05:26:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 05:26:57] Running /usr/bin/apptainer --version
[2025-12-15 05:26:57] apptainer version 1.3.2-1.el7
[2025-12-15 05:26:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 05:26:58] c-205-13.aglt2.org
[2025-12-15 05:26:58] apptainer works
[2025-12-15 05:26:58] Set ATHENA_PROC_NUMBER=12
[2025-12-15 05:26:58] Set ATHENA_CORE_NUMBER=12
[2025-12-15 05:26:58] Starting ATLAS job with PandaID=6929524691
[2025-12-15 05:26:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:45:36 (30853): wrapper (7.7.26015): starting
06:45:36 (30853): wrapper: running run_atlas (--nthreads 12)
[2025-12-15 06:45:36] Arguments: --nthreads 12
[2025-12-15 06:45:36] Threads: 12
[2025-12-15 06:45:36] This job has been restarted, cleaning up previous attempt
[2025-12-15 06:45:36] Checking for CVMFS
[2025-12-15 06:45:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 06:45:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 06:45:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 06:45:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 06:45:37] 2.11.2.0 22587 29541 90080 154031 0 39 13281348 20275201 1 130560 0 10685676 99.903 1884117 41297 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-15 06:45:37] CVMFS is ok
[2025-12-15 06:45:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 06:45:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 06:45:37] Further information can be found at the LHC@home message board.
[2025-12-15 06:45:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 06:45:37] Checking for apptainer binary...
[2025-12-15 06:45:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 06:45:37] Running /usr/bin/apptainer --version
[2025-12-15 06:45:37] apptainer version 1.3.2-1.el7
[2025-12-15 06:45:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 06:45:38] c-205-13.aglt2.org
[2025-12-15 06:45:38] apptainer works
[2025-12-15 06:45:38] Set ATHENA_PROC_NUMBER=12
[2025-12-15 06:45:38] Set ATHENA_CORE_NUMBER=12
[2025-12-15 06:45:38] Starting ATLAS job with PandaID=6929524691
[2025-12-15 06:45:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 08:29:09]  *** The last 200 lines of the pilot log: ***
[2025-12-15 08:29:09] 2025-12-15 13:28:00,400 | INFO     | monitor loop #454: job 0:6929524691 is in state 'finished'
[2025-12-15 08:29:09] 2025-12-15 13:28:00,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 08:29:09] 2025-12-15 13:28:01,287 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-15 08:29:09] 2025-12-15 13:28:01,290 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-12-15 08:29:09] 2025-12-15 13:28:01,292 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929524691/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 08:29:09] 2025-12-15 13:28:01,293 | INFO     | extracted standard info from prmon json
[2025-12-15 08:29:09] 2025-12-15 13:28:01,293 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 08:29:09] 2025-12-15 13:28:01,293 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 08:29:09] 2025-12-15 13:28:01,294 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 08:29:09] 2025-12-15 13:28:01,294 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 08:29:09] 2025-12-15 13:28:01,296 | INFO     | fitting pss+swap vs Time
[2025-12-15 08:29:09] 2025-12-15 13:28:01,296 | INFO     | sum of square deviations: 310052325.0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,296 | INFO     | sum of deviations: 1325397111.4999943
[2025-12-15 08:29:09] 2025-12-15 13:28:01,297 | INFO     | mean x: 1765802201.5
[2025-12-15 08:29:09] 2025-12-15 13:28:01,297 | INFO     | mean y: 2756484.35
[2025-12-15 08:29:09] 2025-12-15 13:28:01,297 | INFO     | intersect: -7545611802.6751995
[2025-12-15 08:29:09] 2025-12-15 13:28:01,297 | INFO     | chi2: 1.6624799009356128
[2025-12-15 08:29:09] 2025-12-15 13:28:01,297 | INFO     | sum of square deviations: 265828240.0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,298 | INFO     | sum of deviations: 2302922447.0000134
[2025-12-15 08:29:09] 2025-12-15 13:28:01,298 | INFO     | mean x: 1765802049.0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,298 | INFO     | mean y: 2759858.0631578946
[2025-12-15 08:29:09] 2025-12-15 13:28:01,298 | INFO     | intersect: -15294731392.680998
[2025-12-15 08:29:09] 2025-12-15 13:28:01,298 | INFO     | chi2: 1.6657545509034168
[2025-12-15 08:29:09] 2025-12-15 13:28:01,299 | INFO     | current chi2=1.6657545509034168 (change=-0.1969738079817452 %)
[2025-12-15 08:29:09] 2025-12-15 13:28:01,299 | INFO     | right removable region: 94
[2025-12-15 08:29:09] 2025-12-15 13:28:01,299 | INFO     | sum of square deviations: 265828240.0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,299 | INFO     | sum of deviations: -16048622980.000002
[2025-12-15 08:29:09] 2025-12-15 13:28:01,299 | INFO     | mean x: 1765802354.0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,299 | INFO     | mean y: 2815222.2736842106
[2025-12-15 08:29:09] 2025-12-15 13:28:01,300 | INFO     | intersect: 106608103797.11621
[2025-12-15 08:29:09] 2025-12-15 13:28:01,300 | INFO     | chi2: 0.11305935601353485
[2025-12-15 08:29:09] 2025-12-15 13:28:01,300 | INFO     | current chi2=0.11305935601353485 (change=93.19935501476395 %)
[2025-12-15 08:29:09] 2025-12-15 13:28:01,300 | INFO     | sum of square deviations: 226022842.5
[2025-12-15 08:29:09] 2025-12-15 13:28:01,301 | INFO     | sum of deviations: -16483918156.5
[2025-12-15 08:29:09] 2025-12-15 13:28:01,301 | INFO     | mean x: 1765802506.5
[2025-12-15 08:29:09] 2025-12-15 13:28:01,301 | INFO     | mean y: 2816648.922222222
[2025-12-15 08:29:09] 2025-12-15 13:28:01,301 | INFO     | intersect: 128783357924.03055
[2025-12-15 08:29:09] 2025-12-15 13:28:01,301 | INFO     | chi2: 0.06638839831032556
[2025-12-15 08:29:09] 2025-12-15 13:28:01,301 | INFO     | current chi2=0.06638839831032556 (change=41.28004912536571 %)
[2025-12-15 08:29:09] 2025-12-15 13:28:01,301 | INFO     | sum of square deviations: 190403570.0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,302 | INFO     | sum of deviations: -14822473752.999998
[2025-12-15 08:29:09] 2025-12-15 13:28:01,302 | INFO     | mean x: 1765802659.0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,302 | INFO     | mean y: 2809516.6352941175
[2025-12-15 08:29:09] 2025-12-15 13:28:01,302 | INFO     | intersect: 137466427273.409
[2025-12-15 08:29:09] 2025-12-15 13:28:01,302 | INFO     | chi2: 0.06308278988459004
[2025-12-15 08:29:09] 2025-12-15 13:28:01,302 | INFO     | current chi2=0.06308278988459004 (change=4.979195928607586 %)
[2025-12-15 08:29:09] 2025-12-15 13:28:01,303 | INFO     | left removable region: 30
[2025-12-15 08:29:09] 2025-12-15 13:28:01,303 | INFO     | sum of square deviations: 81266640.0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,303 | INFO     | sum of deviations: -7960261459.5
[2025-12-15 08:29:09] 2025-12-15 13:28:01,303 | INFO     | mean x: 1765802933.5
[2025-12-15 08:29:09] 2025-12-15 13:28:01,303 | INFO     | mean y: 2785621.890625
[2025-12-15 08:29:09] 2025-12-15 13:28:01,303 | INFO     | intersect: 172967399842.5855
[2025-12-15 08:29:09] 2025-12-15 13:28:01,304 | INFO     | chi2: 0.053778367168028716
[2025-12-15 08:29:09] 2025-12-15 13:28:01,304 | INFO     | current memory leak: -97.95 B/s (using 64 data points, chi2=0.05)
[2025-12-15 08:29:09] 2025-12-15 13:28:01,304 | INFO     | could have reported an average CPU frequency of 2126 MHz (7 samples)
[2025-12-15 08:29:09] 2025-12-15 13:28:01,304 | INFO     | ..............................
[2025-12-15 08:29:09] 2025-12-15 13:28:01,304 | INFO     | . Timing measurements:
[2025-12-15 08:29:09] 2025-12-15 13:28:01,304 | INFO     | . get job = 0 s
[2025-12-15 08:29:09] 2025-12-15 13:28:01,305 | INFO     | . initial setup = 1 s
[2025-12-15 08:29:09] 2025-12-15 13:28:01,305 | INFO     | . payload setup = 7 s
[2025-12-15 08:29:09] 2025-12-15 13:28:01,305 | INFO     | . stage-in = 0 s
[2025-12-15 08:29:09] 2025-12-15 13:28:01,305 | INFO     | . payload execution = 6092 s
[2025-12-15 08:29:09] 2025-12-15 13:28:01,305 | INFO     | . stage-out = 2 s
[2025-12-15 08:29:09] 2025-12-15 13:28:01,305 | INFO     | . log creation = 0 s
[2025-12-15 08:29:09] 2025-12-15 13:28:01,305 | INFO     | ..............................
[2025-12-15 08:29:09] 2025-12-15 13:28:01,388 | INFO     | 
[2025-12-15 08:29:09] 2025-12-15 13:28:01,388 | INFO     | job summary report
[2025-12-15 08:29:09] 2025-12-15 13:28:01,388 | INFO     | --------------------------------------------------
[2025-12-15 08:29:09] 2025-12-15 13:28:01,388 | INFO     | PanDA job id: 6929524691
[2025-12-15 08:29:09] 2025-12-15 13:28:01,388 | INFO     | task id: 47898763
[2025-12-15 08:29:09] 2025-12-15 13:28:01,388 | INFO     | errors: (none)
[2025-12-15 08:29:09] 2025-12-15 13:28:01,388 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 08:29:09] 2025-12-15 13:28:01,388 | INFO     | pilot state: finished 
[2025-12-15 08:29:09] 2025-12-15 13:28:01,389 | INFO     | transexitcode: 0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,389 | INFO     | exeerrorcode: 0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,389 | INFO     | exeerrordiag: 
[2025-12-15 08:29:09] 2025-12-15 13:28:01,389 | INFO     | exitcode: 0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,389 | INFO     | exitmsg: OK
[2025-12-15 08:29:09] 2025-12-15 13:28:01,389 | INFO     | cpuconsumptiontime: 65499 s
[2025-12-15 08:29:09] 2025-12-15 13:28:01,389 | INFO     | nevents: 400
[2025-12-15 08:29:09] 2025-12-15 13:28:01,389 | INFO     | neventsw: 0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,389 | INFO     | pid: 9028
[2025-12-15 08:29:09] 2025-12-15 13:28:01,390 | INFO     | pgrp: 9028
[2025-12-15 08:29:09] 2025-12-15 13:28:01,390 | INFO     | corecount: 12
[2025-12-15 08:29:09] 2025-12-15 13:28:01,390 | INFO     | event service: False
[2025-12-15 08:29:09] 2025-12-15 13:28:01,390 | INFO     | sizes: {0: 2283958, 5: 2284220, 11: 2284276, 6102: 2311026, 6106: 2320108, 6111: 2320246}
[2025-12-15 08:29:09] 2025-12-15 13:28:01,390 | INFO     | --------------------------------------------------
[2025-12-15 08:29:09] 2025-12-15 13:28:01,390 | INFO     | 
[2025-12-15 08:29:09] 2025-12-15 13:28:01,390 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-15 08:29:09] 2025-12-15 13:28:01,414 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,415 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,415 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,415 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,415 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,415 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,415 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,416 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,416 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,416 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,416 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,416 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,416 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,417 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,417 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,417 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,417 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 08:29:09] 2025-12-15 13:28:01,417 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,418 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 08:29:09] 2025-12-15 13:28:01,418 | INFO     | job 6929524691 has completed (purged errors)
[2025-12-15 08:29:09] 2025-12-15 13:28:01,418 | INFO     | overall cleanup function is called
[2025-12-15 08:29:09] 2025-12-15 13:28:02,422 | INFO     | --- collectZombieJob: --- 10, [9028]
[2025-12-15 08:29:09] 2025-12-15 13:28:02,466 | INFO     | zombie collector waiting for pid 9028
[2025-12-15 08:29:09] 2025-12-15 13:28:02,466 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 08:29:09] 2025-12-15 13:28:02,466 | INFO     | collected zombie processes
[2025-12-15 08:29:09] 2025-12-15 13:28:02,466 | INFO     | will attempt to kill all subprocesses of pid=9028
[2025-12-15 08:29:09] 2025-12-15 13:28:02,557 | INFO     | process IDs to be killed: [9028] (in reverse order)
[2025-12-15 08:29:09] 2025-12-15 13:28:02,608 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 08:29:09] 2025-12-15 13:28:02,609 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 08:29:09] 2025-12-15 13:28:02,612 | INFO     | did not find any defunct processes belonging to 9028
[2025-12-15 08:29:09] 2025-12-15 13:28:02,616 | INFO     | did not find any defunct processes belonging to 9028
[2025-12-15 08:29:09] 2025-12-15 13:28:02,616 | INFO     | ready for new job
[2025-12-15 08:29:09] 2025-12-15 13:28:02,616 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 08:29:09] 2025-12-15 13:28:02,618 | INFO     | ***************************************
[2025-12-15 08:29:09] 2025-12-15 13:28:02,618 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 08:29:09] 2025-12-15 13:28:02,618 | INFO     | ***************************************
[2025-12-15 08:29:09] 2025-12-15 13:28:02,618 | INFO     | 
[2025-12-15 08:29:09] 2025-12-15 13:28:02,619 | INFO     | architecture information:
[2025-12-15 08:29:09] 2025-12-15 13:28:02,620 | INFO     | executing command: cat /etc/os-release
[2025-12-15 08:29:09] 2025-12-15 13:28:02,634 | INFO     | cat /etc/os-release:
[2025-12-15 08:29:09] NAME="CentOS Linux"
[2025-12-15 08:29:09] VERSION="7 (Core)"
[2025-12-15 08:29:09] ID="centos"
[2025-12-15 08:29:09] ID_LIKE="rhel fedora"
[2025-12-15 08:29:09] VERSION_ID="7"
[2025-12-15 08:29:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 08:29:09] ANSI_COLOR="0;31"
[2025-12-15 08:29:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 08:29:09] HOME_URL="https://www.centos.org/"
[2025-12-15 08:29:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 08:29:09] 
[2025-12-15 08:29:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 08:29:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 08:29:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 08:29:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 08:29:09] 
[2025-12-15 08:29:09] 2025-12-15 13:28:02,635 | INFO     | ***************************************
[2025-12-15 08:29:09] 2025-12-15 13:28:03,138 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-15 08:29:09] 2025-12-15 13:28:03,154 | INFO     | sufficient remaining disk space (29326573568 B)
[2025-12-15 08:29:09] 2025-12-15 13:28:03,154 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 08:29:09] 2025-12-15 13:28:03,155 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 08:29:09] 2025-12-15 13:28:03,155 | INFO     | update_server=False
[2025-12-15 08:29:09] 2025-12-15 13:28:03,155 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 08:29:09] 2025-12-15 13:28:03,155 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 08:29:09] 2025-12-15 13:28:03,288 | INFO     | all data control threads have been joined
[2025-12-15 08:29:09] 2025-12-15 13:28:03,355 | INFO     | all job control threads have been joined
[2025-12-15 08:29:09] 2025-12-15 13:28:03,675 | INFO     | all payload control threads have been joined
[2025-12-15 08:29:09] 2025-12-15 13:28:03,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 08:29:09] 2025-12-15 13:28:03,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 08:29:09] 2025-12-15 13:28:03,908 | INFO     | aborting loop
[2025-12-15 08:29:09] 2025-12-15 13:28:04,161 | INFO     | [job] retrieve thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:04,161 | INFO     | [job] queue monitor thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:04,293 | INFO     | [data] control thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:04,361 | INFO     | [job] control thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:04,385 | INFO     | [payload] validate_post thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:04,542 | INFO     | [payload] failed_post thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:04,681 | INFO     | [payload] control thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:04,852 | INFO     | [data] copytool_in thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:04,914 | INFO     | [job] job monitor thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:05,121 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:05,327 | INFO     | [job] validate thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:05,413 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:05,579 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:05,722 | INFO     | [data] copytool_out thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:06,402 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 08:29:09] 2025-12-15 13:28:10,405 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:13,892 | INFO     | job.realtimelogging is not enabled
[2025-12-15 08:29:09] 2025-12-15 13:28:14,897 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 08:29:09] 2025-12-15 13:28:32,653 | INFO     | PID=2608 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-15 08:29:09] 2025-12-15 13:28:32,654 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 08:29:09] 2025-12-15 13:28:32,655 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 08:29:09] 2025-12-15 13:28:32,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 08:29:09] 2025-12-15 13:29:02,751 | INFO     | [monitor] cgroup control has ended
[2025-12-15 08:29:09] 2025-12-15 13:29:04,035 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139682508928832)>', '<ExcThread(monitor, started 139681253549824)>']
[2025-12-15 08:29:09] 2025-12-15 13:29:04,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 08:29:09] 2025-12-15 13:29:04,816 | INFO     | [monitor] control thread has ended
[2025-12-15 08:29:09] 2025-12-15 13:29:09,040 | INFO     | all workflow threads have been joined
[2025-12-15 08:29:09] 2025-12-15 13:29:09,040 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 08:29:09] 2025-12-15 13:29:09,041 | INFO     | traces error code: 0
[2025-12-15 08:29:09] 2025-12-15 13:29:09,041 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 08:29:09] 2025-12-15 13:29:09,135 [wrapper] ==== pilot stdout END ====
[2025-12-15 08:29:09] 2025-12-15 13:29:09,139 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 08:29:09] 2025-12-15 13:29:09,142 [wrapper] pilotpid: 2608
[2025-12-15 08:29:09] 2025-12-15 13:29:09,146 [wrapper] Pilot exit status: 0
[2025-12-15 08:29:09] 2025-12-15 13:29:09,163 [wrapper] pandaids: 6929524691 6929524691
[2025-12-15 08:29:09] 2025-12-15 13:29:09,209 [wrapper] cleanup supervisor_pilot  2710 2609
[2025-12-15 08:29:09] 2025-12-15 13:29:09,213 [wrapper] Test setup, not cleaning
[2025-12-15 08:29:09] 2025-12-15 13:29:09,217 [wrapper] apfmon messages muted
[2025-12-15 08:29:09] 2025-12-15 13:29:09,221 [wrapper] ==== wrapper stdout END ====
[2025-12-15 08:29:09] 2025-12-15 13:29:09,225 [wrapper] ==== wrapper stderr END ====
[2025-12-15 08:29:09]  *** Error codes and diagnostics ***
[2025-12-15 08:29:09]     "exeErrorCode": 0,
[2025-12-15 08:29:09]     "exeErrorDiag": "",
[2025-12-15 08:29:09]     "pilotErrorCode": 0,
[2025-12-15 08:29:09]     "pilotErrorDiag": "",
[2025-12-15 08:29:09]  *** Listing of results directory ***
[2025-12-15 08:29:09] total 650068
[2025-12-15 08:29:09] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas    579449 Dec 15 00:25 pilot3.tar.gz
[2025-12-15 08:29:09] -rwx------ 1 boincer umatlas     36322 Dec 15 00:26 runpilot2-wrapper.sh
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas      5112 Dec 15 00:27 queuedata.json
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas       100 Dec 15 05:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 08:29:09] -rwxr-xr-x 1 boincer umatlas      7986 Dec 15 05:26 run_atlas
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas       105 Dec 15 05:26 job.xml
[2025-12-15 08:29:09] -rw-r--r-- 3 boincer umatlas 221284314 Dec 15 05:26 EVNT.47898761._000602.pool.root.1
[2025-12-15 08:29:09] -rw-r--r-- 3 boincer umatlas 221284314 Dec 15 05:26 ATLAS.root_0
[2025-12-15 08:29:09] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 05:26 start_atlas.sh
[2025-12-15 08:29:09] drwxrwx--x 2 boincer umatlas      4096 Dec 15 05:26 shared
[2025-12-15 08:29:09] -rw-r--r-- 2 boincer umatlas    592400 Dec 15 05:26 input.tar.gz
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas         0 Dec 15 05:26 boinc_lockfile
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas      2508 Dec 15 06:45 pandaJob.out
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas        57 Dec 15 06:45 setup.sh.local
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas    991012 Dec 15 06:45 agis_schedconf.cvmfs.json
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas 216619655 Dec 15 08:27 HITS.47898763._013800.pool.root.1
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas       531 Dec 15 08:27 boinc_task_state.xml
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas      5955 Dec 15 08:27 init_data.xml
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas      1048 Dec 15 08:27 memory_monitor_summary.json
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas   1516240 Dec 15 08:27 agis_ddmendpoints.agis.ALL.json
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas    410321 Dec 15 08:27 log.47898763._013800.job.log.tgz.1
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas      7855 Dec 15 08:28 heartbeat.json
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas        96 Dec 15 08:28 pilot_heartbeat.json
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas        29 Dec 15 08:29 wrapper_checkpoint.txt
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas      8192 Dec 15 08:29 boinc_mmap_file
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas      4817 Dec 15 08:29 pilotlog.txt
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas    870561 Dec 15 08:29 log.47898763._013800.job.log.1
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas       357 Dec 15 08:29 output.list
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas       620 Dec 15 08:29 runtime_log
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas   1300480 Dec 15 08:29 result.tar.gz
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas      9429 Dec 15 08:29 runtime_log.err
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas       785 Dec 15 08:29 dMSMDmeHGp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgGXKDmASPaqm.diag
[2025-12-15 08:29:09] -rw-r--r-- 1 boincer umatlas     23196 Dec 15 08:29 stderr.txt
[2025-12-15 08:29:09] HITS file was successfully produced:
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas 216619655 Dec 15 08:27 shared/HITS.pool.root.1
[2025-12-15 08:29:09]  *** Contents of shared directory: ***
[2025-12-15 08:29:09] total 429516
[2025-12-15 08:29:09] -rw-r--r-- 3 boincer umatlas 221284314 Dec 15 05:26 ATLAS.root_0
[2025-12-15 08:29:09] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 05:26 start_atlas.sh
[2025-12-15 08:29:09] -rw-r--r-- 2 boincer umatlas    592400 Dec 15 05:26 input.tar.gz
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas 216619655 Dec 15 08:27 HITS.pool.root.1
[2025-12-15 08:29:09] -rw------- 1 boincer umatlas   1300480 Dec 15 08:29 result.tar.gz
08:29:10 (30853): run_atlas exited; CPU time 65473.065652
08:29:10 (30853): called boinc_finish(0)

</stderr_txt>
]]>

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