Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
12:30:06 (2798348): wrapper (7.7.26015): starting
12:30:06 (2798348): wrapper: running run_atlas (--nthreads 12)
[2025-12-15 12:30:06] Arguments: --nthreads 12
[2025-12-15 12:30:06] Threads: 12
[2025-12-15 12:30:06] Checking for CVMFS
[2025-12-15 12:30:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 12:30:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 12:30:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 12:30:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 12:30:06] 2.13.3.0 33427 913 57300 154031 3 188 2592345 4096000 1959 130560 1 7759139 99.855 1004863 1116 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-15 12:30:06] CVMFS is ok
[2025-12-15 12:30:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 12:30:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 12:30:06] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-15 12:30:06] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-15 12:30:06] Further information can be found at the LHC@home message board.
[2025-12-15 12:30:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 12:30:06] Checking for apptainer binary...
[2025-12-15 12:30:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 12:30:06] Running /usr/bin/apptainer --version
[2025-12-15 12:30:06] apptainer version 1.4.5-2.el10_1
[2025-12-15 12:30:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 12:30:06] OSIRIS
[2025-12-15 12:30:06] apptainer works
[2025-12-15 12:30:06] Set ATHENA_PROC_NUMBER=12
[2025-12-15 12:30:06] Set ATHENA_CORE_NUMBER=12
[2025-12-15 12:30:06] Starting ATLAS job with PandaID=6930761032
[2025-12-15 12:30:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 12:51:18]  *** The last 200 lines of the pilot log: ***
[2025-12-15 12:51:18]  lfn=log.47899042._002461.job.log.tgz.1
[2025-12-15 12:51:18]  mtime=0
[2025-12-15 12:51:18]  protocol_id=None
[2025-12-15 12:51:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-15 12:51:18]  replicas=None
[2025-12-15 12:51:18]  scope=mc23_13p6TeV
[2025-12-15 12:51:18]  status=None
[2025-12-15 12:51:18]  status_code=0
[2025-12-15 12:51:18]  storage_token=
[2025-12-15 12:51:18]  surl=/var/lib/boinc/slots/5/PanDA_Pilot-6930761032/log.47899042._002461.job.log.tgz.1
[2025-12-15 12:51:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/23/log.47899042._002461.job.log.tgz.1
[2025-12-15 12:51:18]  workdir=None
[2025-12-15 12:51:18] ]
[2025-12-15 12:51:18] 2025-12-15 11:50:39,310 | INFO     | transferring file log.47899042._002461.job.log.tgz.1 from /var/lib/boinc/slots/5/PanDA_Pilot-6930761032/log.47899042._002461.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-12-15 12:51:18] 2025-12-15 11:50:39,310 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/5/PanDA_Pilot-6930761032/log.47899042._002461.job.log.tgz.1 /var/lib/boinc/slots/5/log.47899042._002461.job
[2025-12-15 12:51:18] 2025-12-15 11:50:39,320 | INFO     | adding to output.list: log.47899042._002461.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/23/log.47899042._002461.job.log.tg
[2025-12-15 12:51:18] 2025-12-15 11:50:39,321 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-15 12:51:18] 2025-12-15 11:50:39,321 | INFO     | summary of transferred files:
[2025-12-15 12:51:18] 2025-12-15 11:50:39,321 | INFO     |  -- lfn=log.47899042._002461.job.log.tgz.1, status_code=0, status=transferred
[2025-12-15 12:51:18] 2025-12-15 11:50:39,321 | INFO     | stage-out finished correctly
[2025-12-15 12:51:18] 2025-12-15 11:50:39,874 | INFO     | monitor loop #97: job 0:6930761032 is in state 'finished'
[2025-12-15 12:51:18] 2025-12-15 11:50:39,875 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 12:51:18] 2025-12-15 11:50:40,021 | INFO     | time since job start (1229s) is within the limit (174528.0s)
[2025-12-15 12:51:18] 2025-12-15 11:50:42,026 | INFO     | time since job start (1231s) is within the limit (174528.0s)
[2025-12-15 12:51:18] 2025-12-15 11:50:42,306 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-15 12:51:18] 2025-12-15 11:50:42,377 | INFO     | monitor loop #98: job 0:6930761032 is in state 'finished'
[2025-12-15 12:51:18] 2025-12-15 11:50:42,378 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 12:51:18] 2025-12-15 11:50:42,830 | INFO     | job 6930761032 has state=finished
[2025-12-15 12:51:18] 2025-12-15 11:50:42,830 | INFO     | preparing for final server update for job 6930761032 in state='finished'
[2025-12-15 12:51:18] 2025-12-15 11:50:42,830 | INFO     | this job has now completed (state=finished)
[2025-12-15 12:51:18] 2025-12-15 11:50:42,830 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-15 12:51:18] 2025-12-15 11:50:42,830 | INFO     | log transfer has been attempted: DONE
[2025-12-15 12:51:18] 2025-12-15 11:50:42,830 | INFO     | job 6930761032 has finished - writing final server update
[2025-12-15 12:51:18] 2025-12-15 11:50:42,830 | INFO     | total number of processed events: 400 (read)
[2025-12-15 12:51:18] 2025-12-15 11:50:42,831 | INFO     | executing command: lscpu
[2025-12-15 12:51:18] 2025-12-15 11:50:42,846 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-15 12:51:18] 2025-12-15 11:50:44,032 | INFO     | time since job start (1233s) is within the limit (174528.0s)
[2025-12-15 12:51:18] 2025-12-15 11:50:44,391 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-15 12:51:18] 2025-12-15 11:50:44,394 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4703.321854166666
[2025-12-15 12:51:18] 2025-12-15 11:50:44,396 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6930761032/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 12:51:18] 2025-12-15 11:50:44,397 | INFO     | extracted standard info from prmon json
[2025-12-15 12:51:18] 2025-12-15 11:50:44,397 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 12:51:18] 2025-12-15 11:50:44,397 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 12:51:18] 2025-12-15 11:50:44,397 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 12:51:18] 2025-12-15 11:50:44,397 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 12:51:18] 2025-12-15 11:50:44,397 | INFO     | fitting pss+swap vs Time
[2025-12-15 12:51:18] 2025-12-15 11:50:44,397 | INFO     | sum of square deviations: 677222.0
[2025-12-15 12:51:18] 2025-12-15 11:50:44,397 | INFO     | sum of deviations: 41827517.0
[2025-12-15 12:51:18] 2025-12-15 11:50:44,397 | INFO     | mean x: 1765798898.0
[2025-12-15 12:51:18] 2025-12-15 11:50:44,397 | INFO     | mean y: 2823861.230769231
[2025-12-15 12:51:18] 2025-12-15 11:50:44,397 | INFO     | intersect: -109058877360.34245
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | chi2: 0.0011026975113579704
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | current memory leak: 61.76 B/s (using 13 data points, chi2=0.00)
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | could have reported an average CPU frequency of 4661 MHz (4 samples)
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | ..............................
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | . Timing measurements:
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | . get job = 0 s
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | . initial setup = 1 s
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | . payload setup = 1 s
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | . stage-in = 0 s
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | . payload execution = 1210 s
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | . stage-out = 0 s
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | . log creation = 0 s
[2025-12-15 12:51:18] 2025-12-15 11:50:44,398 | INFO     | ..............................
[2025-12-15 12:51:18] 2025-12-15 11:50:44,496 | INFO     | 
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | job summary report
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | --------------------------------------------------
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | PanDA job id: 6930761032
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | task id: 47899042
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | errors: (none)
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | pilot state: finished 
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | transexitcode: 0
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | exeerrorcode: 0
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | exeerrordiag: 
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | exitcode: 0
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | exitmsg: OK
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | cpuconsumptiontime: 12606 s
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | nevents: 400
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | neventsw: 0
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | pid: 2808992
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | pgrp: 2808992
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | corecount: 12
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | event service: False
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | sizes: {0: 2283931, 2: 2284193, 11: 2284221, 1216: 2317819, 1219: 2317819, 1221: 2318013}
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | --------------------------------------------------
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | 
[2025-12-15 12:51:18] 2025-12-15 11:50:44,497 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | job 6930761032 has completed (purged errors)
[2025-12-15 12:51:18] 2025-12-15 11:50:44,507 | INFO     | overall cleanup function is called
[2025-12-15 12:51:18] 2025-12-15 11:50:45,513 | INFO     | --- collectZombieJob: --- 10, [2808992]
[2025-12-15 12:51:18] 2025-12-15 11:50:45,514 | INFO     | zombie collector waiting for pid 2808992
[2025-12-15 12:51:18] 2025-12-15 11:50:45,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 12:51:18] 2025-12-15 11:50:45,514 | INFO     | collected zombie processes
[2025-12-15 12:51:18] 2025-12-15 11:50:45,514 | INFO     | will attempt to kill all subprocesses of pid=2808992
[2025-12-15 12:51:18] 2025-12-15 11:50:45,569 | INFO     | process IDs to be killed: [2808992] (in reverse order)
[2025-12-15 12:51:18] 2025-12-15 11:50:45,599 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 12:51:18] 2025-12-15 11:50:45,599 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 12:51:18] 2025-12-15 11:50:45,602 | INFO     | did not find any defunct processes belonging to 2808992
[2025-12-15 12:51:18] 2025-12-15 11:50:45,604 | INFO     | did not find any defunct processes belonging to 2808992
[2025-12-15 12:51:18] 2025-12-15 11:50:45,604 | INFO     | ready for new job
[2025-12-15 12:51:18] 2025-12-15 11:50:45,604 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 12:51:18] 2025-12-15 11:50:45,605 | INFO     | ***************************************
[2025-12-15 12:51:18] 2025-12-15 11:50:45,605 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 12:51:18] 2025-12-15 11:50:45,605 | INFO     | ***************************************
[2025-12-15 12:51:18] 2025-12-15 11:50:45,605 | INFO     | 
[2025-12-15 12:51:18] 2025-12-15 11:50:45,605 | INFO     | architecture information:
[2025-12-15 12:51:18] 2025-12-15 11:50:45,605 | INFO     | executing command: cat /etc/os-release
[2025-12-15 12:51:18] 2025-12-15 11:50:45,613 | INFO     | cat /etc/os-release:
[2025-12-15 12:51:18] NAME="CentOS Linux"
[2025-12-15 12:51:18] VERSION="7 (Core)"
[2025-12-15 12:51:18] ID="centos"
[2025-12-15 12:51:18] ID_LIKE="rhel fedora"
[2025-12-15 12:51:18] VERSION_ID="7"
[2025-12-15 12:51:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 12:51:18] ANSI_COLOR="0;31"
[2025-12-15 12:51:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 12:51:18] HOME_URL="https://www.centos.org/"
[2025-12-15 12:51:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 12:51:18] 
[2025-12-15 12:51:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 12:51:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 12:51:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 12:51:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 12:51:18] 
[2025-12-15 12:51:18] 2025-12-15 11:50:45,613 | INFO     | ***************************************
[2025-12-15 12:51:18] 2025-12-15 11:50:46,116 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-15 12:51:18] 2025-12-15 11:50:46,124 | INFO     | sufficient remaining disk space (1270211411968 B)
[2025-12-15 12:51:18] 2025-12-15 11:50:46,124 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 12:51:18] 2025-12-15 11:50:46,124 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 12:51:18] 2025-12-15 11:50:46,124 | INFO     | update_server=False
[2025-12-15 12:51:18] 2025-12-15 11:50:46,124 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 12:51:18] 2025-12-15 11:50:46,124 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 12:51:18] 2025-12-15 11:50:46,124 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 12:51:18] 2025-12-15 11:50:46,124 | INFO     | aborting loop
[2025-12-15 12:51:18] 2025-12-15 11:50:46,176 | INFO     | all job control threads have been joined
[2025-12-15 12:51:18] 2025-12-15 11:50:46,193 | INFO     | all data control threads have been joined
[2025-12-15 12:51:18] 2025-12-15 11:50:46,663 | INFO     | all payload control threads have been joined
[2025-12-15 12:51:18] 2025-12-15 11:50:47,129 | INFO     | [job] retrieve thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:47,130 | INFO     | [job] job monitor thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:47,130 | INFO     | [job] queue monitor thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:47,136 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:47,157 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:47,176 | INFO     | [data] copytool_in thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:47,181 | INFO     | [job] control thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:47,198 | INFO     | [data] control thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:47,330 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:47,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 12:51:18] 2025-12-15 11:50:47,509 | INFO     | [payload] failed_post thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:47,669 | INFO     | [payload] control thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:48,036 | INFO     | [payload] validate_post thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:48,347 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 12:51:18] 2025-12-15 11:50:48,489 | INFO     | [job] validate thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:49,371 | INFO     | [data] copytool_out thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:52,353 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:50:56,406 | INFO     | job.realtimelogging is not enabled
[2025-12-15 12:51:18] 2025-12-15 11:50:57,412 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 12:51:18] 2025-12-15 11:51:12,530 | INFO     | [monitor] cgroup control has ended
[2025-12-15 12:51:18] 2025-12-15 11:51:13,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140654363174720)>', '<ExcThread(monitor, started 140653602273024)>']
[2025-12-15 12:51:18] 2025-12-15 11:51:17,168 | INFO     | PID=2802248 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 12:51:18] 2025-12-15 11:51:17,168 | INFO     | .. there are 4 such processes running
[2025-12-15 12:51:18] 2025-12-15 11:51:17,168 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 12:51:18] 2025-12-15 11:51:17,168 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 12:51:18] 2025-12-15 11:51:17,168 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 12:51:18] 2025-12-15 11:51:17,168 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 12:51:18] 2025-12-15 11:51:17,168 | INFO     | [monitor] control thread has ended
[2025-12-15 12:51:18] 2025-12-15 11:51:18,560 | INFO     | all workflow threads have been joined
[2025-12-15 12:51:18] 2025-12-15 11:51:18,560 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 12:51:18] 2025-12-15 11:51:18,560 | INFO     | traces error code: 0
[2025-12-15 12:51:18] 2025-12-15 11:51:18,560 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 12:51:18] 2025-12-15 11:51:18,618 [wrapper] ==== pilot stdout END ====
[2025-12-15 12:51:18] 2025-12-15 11:51:18,620 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 12:51:18] 2025-12-15 11:51:18,621 [wrapper] pilotpid: 2802248
[2025-12-15 12:51:18] 2025-12-15 11:51:18,622 [wrapper] Pilot exit status: 0
[2025-12-15 12:51:18] 2025-12-15 11:51:18,626 [wrapper] pandaids: 6930761032
[2025-12-15 12:51:18] 2025-12-15 11:51:18,643 [wrapper] cleanup supervisor_pilot 2853310 2802249
[2025-12-15 12:51:18] 2025-12-15 11:51:18,644 [wrapper] Test setup, not cleaning
[2025-12-15 12:51:18] 2025-12-15 11:51:18,645 [wrapper] apfmon messages muted
[2025-12-15 12:51:18] 2025-12-15 11:51:18,646 [wrapper] ==== wrapper stdout END ====
[2025-12-15 12:51:18] 2025-12-15 11:51:18,647 [wrapper] ==== wrapper stderr END ====
[2025-12-15 12:51:18]  *** Error codes and diagnostics ***
[2025-12-15 12:51:18]     "exeErrorCode": 0,
[2025-12-15 12:51:18]     "exeErrorDiag": "",
[2025-12-15 12:51:18]     "pilotErrorCode": 0,
[2025-12-15 12:51:18]     "pilotErrorDiag": "",
[2025-12-15 12:51:18]  *** Listing of results directory ***
[2025-12-15 12:51:18] total 369772
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc      5112 Dec 14 19:53 queuedata.json
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc    579449 Dec 14 19:53 pilot3.tar.gz
[2025-12-15 12:51:18] -rwx------ 1 boinc boinc     36322 Dec 14 19:53 runpilot2-wrapper.sh
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc       100 Dec 15 12:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 12:51:18] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 12:30 run_atlas
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc       105 Dec 15 12:30 job.xml
[2025-12-15 12:51:18] -rw-r--r-- 2 boinc boinc     15847 Dec 15 12:30 start_atlas.sh
[2025-12-15 12:51:18] drwxrwx--x 2 boinc boinc        68 Dec 15 12:30 shared
[2025-12-15 12:51:18] -rw-r--r-- 2 boinc boinc    592389 Dec 15 12:30 input.tar.gz
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc      9232 Dec 15 12:30 init_data.xml
[2025-12-15 12:51:18] -rw-r--r-- 2 boinc boinc 196419143 Dec 15 12:30 EVNT.47899040._000077.pool.root.1
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc         0 Dec 15 12:30 boinc_setup_complete
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc         0 Dec 15 12:30 boinc_lockfile
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc      2491 Dec 15 12:30 pandaJob.out
[2025-12-15 12:51:18] -rw------- 1 boinc boinc    991012 Dec 15 12:30 agis_schedconf.cvmfs.json
[2025-12-15 12:51:18] -rw------- 1 boinc boinc   1516240 Dec 15 12:30 agis_ddmendpoints.agis.ALL.json
[2025-12-15 12:51:18] drwx------ 5 boinc boinc      4096 Dec 15 12:30 pilot3
[2025-12-15 12:51:18] -rw------- 1 boinc boinc        95 Dec 15 12:50 pilot_heartbeat.json
[2025-12-15 12:51:18] -rw------- 1 boinc boinc 177238116 Dec 15 12:50 HITS.47899042._002461.pool.root.1
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc       530 Dec 15 12:50 boinc_task_state.xml
[2025-12-15 12:51:18] -rw------- 1 boinc boinc      1027 Dec 15 12:50 memory_monitor_summary.json
[2025-12-15 12:51:18] -rw------- 1 boinc boinc    319265 Dec 15 12:50 log.47899042._002461.job.log.tgz.1
[2025-12-15 12:51:18] -rw------- 1 boinc boinc      7775 Dec 15 12:50 heartbeat.json
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc        27 Dec 15 12:51 wrapper_checkpoint.txt
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc      8192 Dec 15 12:51 boinc_mmap_file
[2025-12-15 12:51:18] -rw------- 1 boinc boinc      4897 Dec 15 12:51 pilotlog.txt
[2025-12-15 12:51:18] -rw------- 1 boinc boinc    223435 Dec 15 12:51 log.47899042._002461.job.log.1
[2025-12-15 12:51:18] -rw------- 1 boinc boinc       357 Dec 15 12:51 output.list
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc       620 Dec 15 12:51 runtime_log
[2025-12-15 12:51:18] -rw------- 1 boinc boinc    563200 Dec 15 12:51 result.tar.gz
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc      8765 Dec 15 12:51 runtime_log.err
[2025-12-15 12:51:18] -rw------- 1 boinc boinc       636 Dec 15 12:51 H7oKDm9O6o8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQ1VKDmO7EKKm.diag
[2025-12-15 12:51:18] -rw-r--r-- 1 boinc boinc     21817 Dec 15 12:51 stderr.txt
[2025-12-15 12:51:18] HITS file was successfully produced:
[2025-12-15 12:51:18] -rw------- 1 boinc boinc 177238116 Dec 15 12:50 shared/HITS.pool.root.1
[2025-12-15 12:51:18]  *** Contents of shared directory: ***
[2025-12-15 12:51:18] total 366052
[2025-12-15 12:51:18] -rw-r--r-- 2 boinc boinc     15847 Dec 15 12:30 start_atlas.sh
[2025-12-15 12:51:18] -rw-r--r-- 2 boinc boinc    592389 Dec 15 12:30 input.tar.gz
[2025-12-15 12:51:18] -rw-r--r-- 2 boinc boinc 196419143 Dec 15 12:30 ATLAS.root_0
[2025-12-15 12:51:18] -rw------- 1 boinc boinc 177238116 Dec 15 12:50 HITS.pool.root.1
[2025-12-15 12:51:18] -rw------- 1 boinc boinc    563200 Dec 15 12:51 result.tar.gz
12:51:19 (2798348): run_atlas exited; CPU time 12611.115377
12:51:19 (2798348): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN