Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:45:49 (7364): wrapper (7.7.26015): starting
03:45:49 (7364): wrapper: running run_atlas (--nthreads 12)
[2025-12-15 03:45:49] Arguments: --nthreads 12
[2025-12-15 03:45:49] Threads: 12
[2025-12-15 03:45:49] Checking for CVMFS
[2025-12-15 03:45:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 03:45:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 03:45:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 03:45:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 03:45:50] 2.11.2.0 22587 29361 91268 154025 0 56 13084916 20275201 1 130560 0 10529958 99.902 1877238 41297 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-15 03:45:50] CVMFS is ok
[2025-12-15 03:45:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 03:45:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 03:45:50] Further information can be found at the LHC@home message board.
[2025-12-15 03:45:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 03:45:50] Checking for apptainer binary...
[2025-12-15 03:45:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 03:45:50] Running /usr/bin/apptainer --version
[2025-12-15 03:45:50] apptainer version 1.3.2-1.el7
[2025-12-15 03:45:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 03:45:51] c-205-13.aglt2.org
[2025-12-15 03:45:51] apptainer works
[2025-12-15 03:45:51] Set ATHENA_PROC_NUMBER=12
[2025-12-15 03:45:51] Set ATHENA_CORE_NUMBER=12
[2025-12-15 03:45:51] Starting ATLAS job with PandaID=6929522858
[2025-12-15 03:45:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 05:26:22]  *** The last 200 lines of the pilot log: ***
[2025-12-15 05:26:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-15 05:26:22]  replicas=None
[2025-12-15 05:26:22]  scope=mc23_13p6TeV
[2025-12-15 05:26:22]  status=None
[2025-12-15 05:26:22]  status_code=0
[2025-12-15 05:26:22]  storage_token=
[2025-12-15 05:26:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929522858/log.47898826._000906.job.log.tgz.1
[2025-12-15 05:26:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/16/log.47898826._000906.job.log.tgz.1
[2025-12-15 05:26:22]  workdir=None
[2025-12-15 05:26:22] ]
[2025-12-15 05:26:22] 2025-12-15 10:25:19,904 | INFO     | transferring file log.47898826._000906.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929522858/log.47898826._000906.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-15 05:26:22] 2025-12-15 10:25:19,904 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929522858/log.47898826._000906.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._000906.job
[2025-12-15 05:26:22] 2025-12-15 10:25:19,927 | INFO     | adding to output.list: log.47898826._000906.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/16/log.47898826._000906.job.log.tg
[2025-12-15 05:26:22] 2025-12-15 10:25:19,928 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-15 05:26:22] 2025-12-15 10:25:19,928 | INFO     | summary of transferred files:
[2025-12-15 05:26:22] 2025-12-15 10:25:19,928 | INFO     |  -- lfn=log.47898826._000906.job.log.tgz.1, status_code=0, status=transferred
[2025-12-15 05:26:22] 2025-12-15 10:25:19,929 | INFO     | stage-out finished correctly
[2025-12-15 05:26:22] 2025-12-15 10:25:20,124 | INFO     | time since job start (5954s) is within the limit (174528.0s)
[2025-12-15 05:26:22] 2025-12-15 10:25:21,244 | INFO     | PID=11085 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-15 05:26:22] 2025-12-15 10:25:21,825 | INFO     | monitor loop #441: job 0:6929522858 is in state 'finished'
[2025-12-15 05:26:22] 2025-12-15 10:25:21,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 05:26:22] 2025-12-15 10:25:22,242 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-15 05:26:22] 2025-12-15 10:25:22,255 | INFO     | time since job start (5956s) is within the limit (174528.0s)
[2025-12-15 05:26:22] 2025-12-15 10:25:22,323 | INFO     | job 6929522858 has state=finished
[2025-12-15 05:26:22] 2025-12-15 10:25:22,323 | INFO     | preparing for final server update for job 6929522858 in state='finished'
[2025-12-15 05:26:22] 2025-12-15 10:25:22,334 | INFO     | this job has now completed (state=finished)
[2025-12-15 05:26:22] 2025-12-15 10:25:22,334 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-15 05:26:22] 2025-12-15 10:25:22,334 | INFO     | log transfer has been attempted: DONE
[2025-12-15 05:26:22] 2025-12-15 10:25:22,334 | INFO     | job 6929522858 has finished - writing final server update
[2025-12-15 05:26:22] 2025-12-15 10:25:22,335 | INFO     | total number of processed events: 400 (read)
[2025-12-15 05:26:22] 2025-12-15 10:25:22,337 | INFO     | executing command: lscpu
[2025-12-15 05:26:22] 2025-12-15 10:25:22,365 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-15 05:26:22] 2025-12-15 10:25:24,266 | INFO     | time since job start (5958s) is within the limit (174528.0s)
[2025-12-15 05:26:22] 2025-12-15 10:25:24,329 | INFO     | monitor loop #442: job 0:6929522858 is in state 'finished'
[2025-12-15 05:26:22] 2025-12-15 10:25:24,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 05:26:22] 2025-12-15 10:25:26,272 | INFO     | time since job start (5960s) is within the limit (174528.0s)
[2025-12-15 05:26:22] 2025-12-15 10:25:26,832 | INFO     | monitor loop #443: job 0:6929522858 is in state 'finished'
[2025-12-15 05:26:22] 2025-12-15 10:25:26,832 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 05:26:22] 2025-12-15 10:25:26,986 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-15 05:26:22] 2025-12-15 10:25:26,990 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-15 05:26:22] 2025-12-15 10:25:26,991 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929522858/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 05:26:22] 2025-12-15 10:25:26,992 | INFO     | extracted standard info from prmon json
[2025-12-15 05:26:22] 2025-12-15 10:25:26,992 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 05:26:22] 2025-12-15 10:25:26,992 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 05:26:22] 2025-12-15 10:25:26,993 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 05:26:22] 2025-12-15 10:25:26,993 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 05:26:22] 2025-12-15 10:25:26,994 | INFO     | fitting pss+swap vs Time
[2025-12-15 05:26:22] 2025-12-15 10:25:26,995 | INFO     | sum of square deviations: 233641590.0
[2025-12-15 05:26:22] 2025-12-15 10:25:26,995 | INFO     | sum of deviations: -13112574884.000002
[2025-12-15 05:26:22] 2025-12-15 10:25:26,995 | INFO     | mean x: 1765791445.0
[2025-12-15 05:26:22] 2025-12-15 10:25:26,995 | INFO     | mean y: 2792581.681318681
[2025-12-15 05:26:22] 2025-12-15 10:25:26,996 | INFO     | intersect: 99103610000.74216
[2025-12-15 05:26:22] 2025-12-15 10:25:26,996 | INFO     | chi2: 0.14288301603410672
[2025-12-15 05:26:22] 2025-12-15 10:25:26,996 | INFO     | current memory leak: -56.12 B/s (using 91 data points, chi2=0.14)
[2025-12-15 05:26:22] 2025-12-15 10:25:26,996 | INFO     | could have reported an average CPU frequency of 2120 MHz (7 samples)
[2025-12-15 05:26:22] 2025-12-15 10:25:26,996 | INFO     | ..............................
[2025-12-15 05:26:22] 2025-12-15 10:25:26,996 | INFO     | . Timing measurements:
[2025-12-15 05:26:22] 2025-12-15 10:25:26,997 | INFO     | . get job = 0 s
[2025-12-15 05:26:22] 2025-12-15 10:25:26,997 | INFO     | . initial setup = 2 s
[2025-12-15 05:26:22] 2025-12-15 10:25:26,997 | INFO     | . payload setup = 7 s
[2025-12-15 05:26:22] 2025-12-15 10:25:26,997 | INFO     | . stage-in = 0 s
[2025-12-15 05:26:22] 2025-12-15 10:25:26,997 | INFO     | . payload execution = 5924 s
[2025-12-15 05:26:22] 2025-12-15 10:25:26,997 | INFO     | . stage-out = 0 s
[2025-12-15 05:26:22] 2025-12-15 10:25:26,997 | INFO     | . log creation = 0 s
[2025-12-15 05:26:22] 2025-12-15 10:25:26,997 | INFO     | ..............................
[2025-12-15 05:26:22] 2025-12-15 10:25:27,578 | INFO     | 
[2025-12-15 05:26:22] 2025-12-15 10:25:27,578 | INFO     | job summary report
[2025-12-15 05:26:22] 2025-12-15 10:25:27,578 | INFO     | --------------------------------------------------
[2025-12-15 05:26:22] 2025-12-15 10:25:27,579 | INFO     | PanDA job id: 6929522858
[2025-12-15 05:26:22] 2025-12-15 10:25:27,579 | INFO     | task id: 47898826
[2025-12-15 05:26:22] 2025-12-15 10:25:27,579 | INFO     | errors: (none)
[2025-12-15 05:26:22] 2025-12-15 10:25:27,579 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 05:26:22] 2025-12-15 10:25:27,579 | INFO     | pilot state: finished 
[2025-12-15 05:26:22] 2025-12-15 10:25:27,579 | INFO     | transexitcode: 0
[2025-12-15 05:26:22] 2025-12-15 10:25:27,580 | INFO     | exeerrorcode: 0
[2025-12-15 05:26:22] 2025-12-15 10:25:27,580 | INFO     | exeerrordiag: 
[2025-12-15 05:26:22] 2025-12-15 10:25:27,580 | INFO     | exitcode: 0
[2025-12-15 05:26:22] 2025-12-15 10:25:27,580 | INFO     | exitmsg: OK
[2025-12-15 05:26:22] 2025-12-15 10:25:27,580 | INFO     | cpuconsumptiontime: 65056 s
[2025-12-15 05:26:22] 2025-12-15 10:25:27,580 | INFO     | nevents: 400
[2025-12-15 05:26:22] 2025-12-15 10:25:27,580 | INFO     | neventsw: 0
[2025-12-15 05:26:22] 2025-12-15 10:25:27,581 | INFO     | pid: 17445
[2025-12-15 05:26:22] 2025-12-15 10:25:27,581 | INFO     | pgrp: 17445
[2025-12-15 05:26:22] 2025-12-15 10:25:27,581 | INFO     | corecount: 12
[2025-12-15 05:26:22] 2025-12-15 10:25:27,581 | INFO     | event service: False
[2025-12-15 05:26:22] 2025-12-15 10:25:27,581 | INFO     | sizes: {0: 2283842, 1: 2283984, 5: 2284246, 11: 2284302, 5935: 2311020, 5937: 2320018, 5939: 2320202, 5944: 2320396}
[2025-12-15 05:26:22] 2025-12-15 10:25:27,581 | INFO     | --------------------------------------------------
[2025-12-15 05:26:22] 2025-12-15 10:25:27,581 | INFO     | 
[2025-12-15 05:26:22] 2025-12-15 10:25:27,582 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-15 05:26:22] 2025-12-15 10:25:27,657 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,657 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,658 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,658 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,658 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,658 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,658 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,658 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,658 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,658 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,659 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,659 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,659 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,659 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,659 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,659 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,660 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,660 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 05:26:22] 2025-12-15 10:25:27,660 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,660 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 05:26:22] 2025-12-15 10:25:27,660 | INFO     | job 6929522858 has completed (purged errors)
[2025-12-15 05:26:22] 2025-12-15 10:25:27,660 | INFO     | overall cleanup function is called
[2025-12-15 05:26:22] 2025-12-15 10:25:28,668 | INFO     | --- collectZombieJob: --- 10, [17445]
[2025-12-15 05:26:22] 2025-12-15 10:25:28,668 | INFO     | zombie collector waiting for pid 17445
[2025-12-15 05:26:22] 2025-12-15 10:25:28,669 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 05:26:22] 2025-12-15 10:25:28,669 | INFO     | collected zombie processes
[2025-12-15 05:26:22] 2025-12-15 10:25:28,669 | INFO     | will attempt to kill all subprocesses of pid=17445
[2025-12-15 05:26:22] 2025-12-15 10:25:28,760 | INFO     | process IDs to be killed: [17445] (in reverse order)
[2025-12-15 05:26:22] 2025-12-15 10:25:28,815 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 05:26:22] 2025-12-15 10:25:28,815 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 05:26:22] 2025-12-15 10:25:28,818 | INFO     | did not find any defunct processes belonging to 17445
[2025-12-15 05:26:22] 2025-12-15 10:25:28,821 | INFO     | did not find any defunct processes belonging to 17445
[2025-12-15 05:26:22] 2025-12-15 10:25:28,821 | INFO     | ready for new job
[2025-12-15 05:26:22] 2025-12-15 10:25:28,821 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 05:26:22] 2025-12-15 10:25:28,822 | INFO     | ***************************************
[2025-12-15 05:26:22] 2025-12-15 10:25:28,822 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 05:26:22] 2025-12-15 10:25:28,822 | INFO     | ***************************************
[2025-12-15 05:26:22] 2025-12-15 10:25:28,822 | INFO     | 
[2025-12-15 05:26:22] 2025-12-15 10:25:28,823 | INFO     | architecture information:
[2025-12-15 05:26:22] 2025-12-15 10:25:28,823 | INFO     | executing command: cat /etc/os-release
[2025-12-15 05:26:22] 2025-12-15 10:25:28,839 | INFO     | cat /etc/os-release:
[2025-12-15 05:26:22] NAME="CentOS Linux"
[2025-12-15 05:26:22] VERSION="7 (Core)"
[2025-12-15 05:26:22] ID="centos"
[2025-12-15 05:26:22] ID_LIKE="rhel fedora"
[2025-12-15 05:26:22] VERSION_ID="7"
[2025-12-15 05:26:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 05:26:22] ANSI_COLOR="0;31"
[2025-12-15 05:26:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 05:26:22] HOME_URL="https://www.centos.org/"
[2025-12-15 05:26:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 05:26:22] 
[2025-12-15 05:26:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 05:26:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 05:26:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 05:26:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 05:26:22] 
[2025-12-15 05:26:22] 2025-12-15 10:25:28,839 | INFO     | ***************************************
[2025-12-15 05:26:22] 2025-12-15 10:25:29,342 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-15 05:26:22] 2025-12-15 10:25:29,358 | INFO     | sufficient remaining disk space (29316087808 B)
[2025-12-15 05:26:22] 2025-12-15 10:25:29,358 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 05:26:22] 2025-12-15 10:25:29,358 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 05:26:22] 2025-12-15 10:25:29,359 | INFO     | update_server=False
[2025-12-15 05:26:22] 2025-12-15 10:25:29,359 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 05:26:22] 2025-12-15 10:25:29,618 | INFO     | all job control threads have been joined
[2025-12-15 05:26:22] 2025-12-15 10:25:29,839 | INFO     | all data control threads have been joined
[2025-12-15 05:26:22] 2025-12-15 10:25:30,031 | INFO     | all payload control threads have been joined
[2025-12-15 05:26:22] 2025-12-15 10:25:30,340 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 05:26:22] 2025-12-15 10:25:30,341 | INFO     | aborting loop
[2025-12-15 05:26:22] 2025-12-15 10:25:30,364 | INFO     | [job] retrieve thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:30,500 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:30,527 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 05:26:22] 2025-12-15 10:25:30,612 | INFO     | [payload] failed_post thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:30,623 | INFO     | [job] control thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:30,626 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:30,682 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:30,769 | INFO     | [data] copytool_in thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:30,844 | INFO     | [data] control thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:31,037 | INFO     | [payload] control thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:31,346 | INFO     | [job] job monitor thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:31,572 | INFO     | [payload] validate_post thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:31,691 | INFO     | [job] validate thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:31,862 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:32,089 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 05:26:22] 2025-12-15 10:25:32,532 | INFO     | [data] copytool_out thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:32,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 05:26:22] 2025-12-15 10:25:33,094 | INFO     | [job] queue monitor thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:36,837 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 05:26:22] 2025-12-15 10:25:58,354 | INFO     | 5964s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-15 05:26:22] 2025-12-15 10:25:59,473 | INFO     | PID=11085 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-15 05:26:22] 2025-12-15 10:25:59,473 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 05:26:22] 2025-12-15 10:25:59,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 05:26:22] 2025-12-15 10:25:59,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 05:26:22] 2025-12-15 10:26:16,043 | INFO     | [monitor] cgroup control has ended
[2025-12-15 05:26:22] 2025-12-15 10:26:17,259 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701730015040)>', '<ExcThread(monitor, started 140700695910144)>']
[2025-12-15 05:26:22] 2025-12-15 10:26:17,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 05:26:22] 2025-12-15 10:26:17,550 | INFO     | [monitor] control thread has ended
[2025-12-15 05:26:22] 2025-12-15 10:26:22,270 | INFO     | all workflow threads have been joined
[2025-12-15 05:26:22] 2025-12-15 10:26:22,270 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 05:26:22] 2025-12-15 10:26:22,270 | INFO     | traces error code: 0
[2025-12-15 05:26:22] 2025-12-15 10:26:22,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 05:26:22] 2025-12-15 10:26:22,368 [wrapper] ==== pilot stdout END ====
[2025-12-15 05:26:22] 2025-12-15 10:26:22,372 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 05:26:22] 2025-12-15 10:26:22,375 [wrapper] pilotpid: 11085
[2025-12-15 05:26:22] 2025-12-15 10:26:22,379 [wrapper] Pilot exit status: 0
[2025-12-15 05:26:22] 2025-12-15 10:26:22,395 [wrapper] pandaids: 6929522858
[2025-12-15 05:26:22] 2025-12-15 10:26:22,441 [wrapper] cleanup supervisor_pilot 16590 11086
[2025-12-15 05:26:22] 2025-12-15 10:26:22,445 [wrapper] Test setup, not cleaning
[2025-12-15 05:26:22] 2025-12-15 10:26:22,449 [wrapper] apfmon messages muted
[2025-12-15 05:26:22] 2025-12-15 10:26:22,452 [wrapper] ==== wrapper stdout END ====
[2025-12-15 05:26:22] 2025-12-15 10:26:22,456 [wrapper] ==== wrapper stderr END ====
[2025-12-15 05:26:22]  *** Error codes and diagnostics ***
[2025-12-15 05:26:22]     "exeErrorCode": 0,
[2025-12-15 05:26:22]     "exeErrorDiag": "",
[2025-12-15 05:26:22]     "pilotErrorCode": 0,
[2025-12-15 05:26:22]     "pilotErrorDiag": "",
[2025-12-15 05:26:22]  *** Listing of results directory ***
[2025-12-15 05:26:22] total 440984
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas      5112 Dec 14 18:13 queuedata.json
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas    579449 Dec 14 18:13 pilot3.tar.gz
[2025-12-15 05:26:22] -rwx------ 1 boincer umatlas     36322 Dec 14 18:15 runpilot2-wrapper.sh
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas       100 Dec 15 03:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 05:26:22] -rwxr-xr-x 1 boincer umatlas      7986 Dec 15 03:45 run_atlas
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas       105 Dec 15 03:45 job.xml
[2025-12-15 05:26:22] -rw-r--r-- 2 boincer umatlas 225148679 Dec 15 03:45 EVNT.47898824._000045.pool.root.1
[2025-12-15 05:26:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 03:45 start_atlas.sh
[2025-12-15 05:26:22] drwxrwx--x 2 boincer umatlas      4096 Dec 15 03:45 shared
[2025-12-15 05:26:22] -rw-r--r-- 2 boincer umatlas    592385 Dec 15 03:45 input.tar.gz
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas         0 Dec 15 03:45 boinc_lockfile
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas      2511 Dec 15 03:45 pandaJob.out
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas        57 Dec 15 03:45 setup.sh.local
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas    991016 Dec 15 03:46 agis_schedconf.cvmfs.json
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas   1516240 Dec 15 03:46 agis_ddmendpoints.agis.ALL.json
[2025-12-15 05:26:22] drwx------ 5 boincer umatlas      4096 Dec 15 03:46 pilot3
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas      5953 Dec 15 05:22 init_data.xml
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas 220025063 Dec 15 05:24 HITS.47898826._000906.pool.root.1
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas      1046 Dec 15 05:25 memory_monitor_summary.json
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas       529 Dec 15 05:25 boinc_task_state.xml
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas    394597 Dec 15 05:25 log.47898826._000906.job.log.tgz.1
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas        95 Dec 15 05:25 pilot_heartbeat.json
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas      7848 Dec 15 05:25 heartbeat.json
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas      8192 Dec 15 05:25 boinc_mmap_file
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas        27 Dec 15 05:25 wrapper_checkpoint.txt
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas      4861 Dec 15 05:26 pilotlog.txt
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas    846874 Dec 15 05:26 log.47898826._000906.job.log.1
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas       357 Dec 15 05:26 output.list
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas       620 Dec 15 05:26 runtime_log
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas   1259520 Dec 15 05:26 result.tar.gz
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas      9344 Dec 15 05:26 runtime_log.err
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas       659 Dec 15 05:26 g2JKDmJUAp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGGSKDmA27f1m.diag
[2025-12-15 05:26:22] -rw-r--r-- 1 boincer umatlas     22052 Dec 15 05:26 stderr.txt
[2025-12-15 05:26:22] HITS file was successfully produced:
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas 220025063 Dec 15 05:24 shared/HITS.pool.root.1
[2025-12-15 05:26:22]  *** Contents of shared directory: ***
[2025-12-15 05:26:22] total 436572
[2025-12-15 05:26:22] -rw-r--r-- 2 boincer umatlas 225148679 Dec 15 03:45 ATLAS.root_0
[2025-12-15 05:26:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 03:45 start_atlas.sh
[2025-12-15 05:26:22] -rw-r--r-- 2 boincer umatlas    592385 Dec 15 03:45 input.tar.gz
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas 220025063 Dec 15 05:24 HITS.pool.root.1
[2025-12-15 05:26:22] -rw------- 1 boincer umatlas   1259520 Dec 15 05:26 result.tar.gz
05:26:23 (7364): run_atlas exited; CPU time 65050.751768
05:26:23 (7364): called boinc_finish(0)

</stderr_txt>
]]>

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