Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:17:54 (2595222): wrapper (7.7.26015): starting
18:17:54 (2595222): wrapper: running run_atlas (--nthreads 3)
[2025-12-15 18:17:54] Arguments: --nthreads 3
[2025-12-15 18:17:54] Threads: 3
[2025-12-15 18:17:54] Checking for CVMFS
[2025-12-15 18:17:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 18:17:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 18:17:54] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 18:17:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 18:17:55] 2.9.2.0 2456439 425 61156 154041 3 56 19431919 36864000 0 130560 0 280644 99.986 19287 12292 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 18:17:55] CVMFS is ok
[2025-12-15 18:17:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 18:17:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 18:17:55] Further information can be found at the LHC@home message board.
[2025-12-15 18:17:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 18:17:55] Checking for apptainer binary...
[2025-12-15 18:17:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 18:17:55] Running /usr/bin/apptainer --version
[2025-12-15 18:17:55] apptainer version 1.4.1-1.1
[2025-12-15 18:17:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 18:17:55] atlasA230
[2025-12-15 18:17:55] apptainer works
[2025-12-15 18:17:55] Set ATHENA_PROC_NUMBER=3
[2025-12-15 18:17:55] Set ATHENA_CORE_NUMBER=3
[2025-12-15 18:17:55] Starting ATLAS job with PandaID=6930659895
[2025-12-15 18:17:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 19:35:12]  *** The last 200 lines of the pilot log: ***
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,836 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 19:35:12] 2025-12-15 18:34:35,837 | INFO     | job 6930659895 has completed (purged errors)
[2025-12-15 19:35:12] 2025-12-15 18:34:35,837 | INFO     | overall cleanup function is called
[2025-12-15 19:35:12] 2025-12-15 18:34:36,842 | INFO     | --- collectZombieJob: --- 10, [2605389]
[2025-12-15 19:35:12] 2025-12-15 18:34:36,842 | INFO     | zombie collector waiting for pid 2605389
[2025-12-15 19:35:12] 2025-12-15 18:34:36,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 19:35:12] 2025-12-15 18:34:36,842 | INFO     | collected zombie processes
[2025-12-15 19:35:12] 2025-12-15 18:34:36,842 | INFO     | will attempt to kill all subprocesses of pid=2605389
[2025-12-15 19:35:12] 2025-12-15 18:34:36,897 | INFO     | process IDs to be killed: [2605389] (in reverse order)
[2025-12-15 19:35:12] 2025-12-15 18:34:36,925 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 19:35:12] 2025-12-15 18:34:36,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 19:35:12] 2025-12-15 18:34:36,928 | INFO     | did not find any defunct processes belonging to 2605389
[2025-12-15 19:35:12] 2025-12-15 18:34:36,929 | INFO     | did not find any defunct processes belonging to 2605389
[2025-12-15 19:35:12] 2025-12-15 18:34:36,929 | INFO     | ready for new job
[2025-12-15 19:35:12] 2025-12-15 18:34:36,929 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 19:35:12] 2025-12-15 18:34:36,930 | INFO     | ***************************************
[2025-12-15 19:35:12] 2025-12-15 18:34:36,930 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 19:35:12] 2025-12-15 18:34:36,930 | INFO     | ***************************************
[2025-12-15 19:35:12] 2025-12-15 18:34:36,930 | INFO     | 
[2025-12-15 19:35:12] 2025-12-15 18:34:36,930 | INFO     | architecture information:
[2025-12-15 19:35:12] 2025-12-15 18:34:36,930 | INFO     | executing command: cat /etc/os-release
[2025-12-15 19:35:12] 2025-12-15 18:34:36,939 | INFO     | cat /etc/os-release:
[2025-12-15 19:35:12] NAME="CentOS Linux"
[2025-12-15 19:35:12] VERSION="7 (Core)"
[2025-12-15 19:35:12] ID="centos"
[2025-12-15 19:35:12] ID_LIKE="rhel fedora"
[2025-12-15 19:35:12] VERSION_ID="7"
[2025-12-15 19:35:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 19:35:12] ANSI_COLOR="0;31"
[2025-12-15 19:35:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 19:35:12] HOME_URL="https://www.centos.org/"
[2025-12-15 19:35:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 19:35:12] 
[2025-12-15 19:35:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 19:35:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 19:35:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 19:35:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 19:35:12] 
[2025-12-15 19:35:12] 2025-12-15 18:34:36,939 | INFO     | ***************************************
[2025-12-15 19:35:12] 2025-12-15 18:34:37,443 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 19:35:12] 2025-12-15 18:34:37,456 | INFO     | sufficient remaining disk space (340947632128 B)
[2025-12-15 19:35:12] 2025-12-15 18:34:37,456 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 19:35:12] 2025-12-15 18:34:37,456 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 19:35:12] 2025-12-15 18:34:37,456 | INFO     | update_server=False
[2025-12-15 19:35:12] 2025-12-15 18:34:37,456 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 19:35:12] 2025-12-15 18:34:37,456 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 19:35:12] 2025-12-15 18:34:37,456 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 19:35:12] 2025-12-15 18:34:37,704 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 19:35:12] 2025-12-15 18:34:37,787 | INFO     | all data control threads have been joined
[2025-12-15 19:35:12] 2025-12-15 18:34:38,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 19:35:12] 2025-12-15 18:34:38,013 | INFO     | aborting loop
[2025-12-15 19:35:12] 2025-12-15 18:34:38,279 | INFO     | all job control threads have been joined
[2025-12-15 19:35:12] 2025-12-15 18:34:38,462 | INFO     | [job] retrieve thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:38,462 | INFO     | [job] queue monitor thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:38,621 | INFO     | all payload control threads have been joined
[2025-12-15 19:35:12] 2025-12-15 18:34:38,792 | INFO     | [data] control thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:38,896 | INFO     | [payload] failed_post thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:39,019 | INFO     | [job] job monitor thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:39,285 | INFO     | [job] control thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:39,388 | INFO     | [data] copytool_in thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:39,395 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:39,627 | INFO     | [payload] control thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:39,706 | INFO     | [data] copytool_out thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:39,844 | INFO     | [job] validate thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:39,868 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:39,892 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:40,026 | INFO     | [payload] validate_post thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:41,463 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:34:47,866 | INFO     | job.realtimelogging is not enabled
[2025-12-15 19:35:12] 2025-12-15 18:34:48,872 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 19:35:12] 2025-12-15 18:35:06,285 | INFO     | [monitor] cgroup control has ended
[2025-12-15 19:35:12] 2025-12-15 18:35:06,846 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140216086288192)>', '<ExcThread(monitor, started 140215733688064)>']
[2025-12-15 19:35:12] 2025-12-15 18:35:08,298 | INFO     | PID=2598948 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 19:35:12] 2025-12-15 18:35:08,299 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 19:35:12] 2025-12-15 18:35:08,299 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 19:35:12] 2025-12-15 18:35:08,299 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 19:35:12] 2025-12-15 18:35:08,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 19:35:12] 2025-12-15 18:35:08,299 | INFO     | [monitor] control thread has ended
[2025-12-15 19:35:12] 2025-12-15 18:35:11,872 | INFO     | all workflow threads have been joined
[2025-12-15 19:35:12] 2025-12-15 18:35:11,872 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 19:35:12] 2025-12-15 18:35:11,872 | INFO     | traces error code: 0
[2025-12-15 19:35:12] 2025-12-15 18:35:11,872 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 19:35:12] 2025-12-15 18:35:11,924 [wrapper] ==== pilot stdout END ====
[2025-12-15 19:35:12] 2025-12-15 18:35:11,927 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 19:35:12] 2025-12-15 18:35:11,929 [wrapper] pilotpid: 2598948
[2025-12-15 19:35:12] 2025-12-15 18:35:11,931 [wrapper] Pilot exit status: 0
[2025-12-15 19:35:12] 2025-12-15 18:35:11,938 [wrapper] pandaids: 6930659895
[2025-12-15 19:35:12] 2025-12-15 18:35:11,957 [wrapper] cleanup supervisor_pilot 2617845 2598949
[2025-12-15 19:35:12] 2025-12-15 18:35:11,959 [wrapper] Test setup, not cleaning
[2025-12-15 19:35:12] 2025-12-15 18:35:11,961 [wrapper] apfmon messages muted
[2025-12-15 19:35:12] 2025-12-15 18:35:11,964 [wrapper] ==== wrapper stdout END ====
[2025-12-15 19:35:12] 2025-12-15 18:35:11,966 [wrapper] ==== wrapper stderr END ====
[2025-12-15 19:35:12]  *** Error codes and diagnostics ***
[2025-12-15 19:35:12]     "exeErrorCode": 0,
[2025-12-15 19:35:12]     "exeErrorDiag": "",
[2025-12-15 19:35:12]     "pilotErrorCode": 0,
[2025-12-15 19:35:12]     "pilotErrorDiag": "",
[2025-12-15 19:35:12]  *** Listing of results directory ***
[2025-12-15 19:35:12] total 371984
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc    579449 Dec 14 16:56 pilot3.tar.gz
[2025-12-15 19:35:12] -rwx------ 1 boinc boinc     36322 Dec 14 16:56 runpilot2-wrapper.sh
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc      5112 Dec 14 16:56 queuedata.json
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc       100 Dec 15 18:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 19:35:12] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 18:17 run_atlas
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc       105 Dec 15 18:17 job.xml
[2025-12-15 19:35:12] -rw-r--r-- 2 boinc boinc 197070748 Dec 15 18:17 EVNT.47898875._000052.pool.root.1
[2025-12-15 19:35:12] -rw-r--r-- 2 boinc boinc    592395 Dec 15 18:17 input.tar.gz
[2025-12-15 19:35:12] drwxrwx--x 2 boinc boinc      4096 Dec 15 18:17 shared
[2025-12-15 19:35:12] -rw-r--r-- 2 boinc boinc     15847 Dec 15 18:17 start_atlas.sh
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc         0 Dec 15 18:17 boinc_setup_complete
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc      6442 Dec 15 18:17 init_data.xml
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc         0 Dec 15 18:17 boinc_lockfile
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc      2499 Dec 15 18:17 pandaJob.out
[2025-12-15 19:35:12] -rw------- 1 boinc boinc    994473 Dec 15 18:17 agis_schedconf.cvmfs.json
[2025-12-15 19:35:12] -rw------- 1 boinc boinc   1516240 Dec 15 18:18 agis_ddmendpoints.agis.ALL.json
[2025-12-15 19:35:12] drwx------ 5 boinc boinc      4096 Dec 15 18:18 pilot3
[2025-12-15 19:35:12] -rw------- 1 boinc boinc 178067268 Dec 15 19:34 HITS.47898878._001320.pool.root.1
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc       529 Dec 15 19:34 boinc_task_state.xml
[2025-12-15 19:35:12] -rw------- 1 boinc boinc        95 Dec 15 19:34 pilot_heartbeat.json
[2025-12-15 19:35:12] -rw------- 1 boinc boinc      1021 Dec 15 19:34 memory_monitor_summary.json
[2025-12-15 19:35:12] -rw------- 1 boinc boinc    252533 Dec 15 19:34 log.47898878._001320.job.log.tgz.1
[2025-12-15 19:35:12] -rw------- 1 boinc boinc      7765 Dec 15 19:34 heartbeat.json
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc        27 Dec 15 19:34 wrapper_checkpoint.txt
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc      8192 Dec 15 19:34 boinc_mmap_file
[2025-12-15 19:35:12] -rw------- 1 boinc boinc      4824 Dec 15 19:35 pilotlog.txt
[2025-12-15 19:35:12] -rw------- 1 boinc boinc    678519 Dec 15 19:35 log.47898878._001320.job.log.1
[2025-12-15 19:35:12] -rw------- 1 boinc boinc       357 Dec 15 19:35 output.list
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc       620 Dec 15 19:35 runtime_log
[2025-12-15 19:35:12] -rw------- 1 boinc boinc    952320 Dec 15 19:35 result.tar.gz
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc      8912 Dec 15 19:35 runtime_log.err
[2025-12-15 19:35:12] -rw------- 1 boinc boinc       661 Dec 15 19:35 MOSMDmBd3o8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5pVKDmFabKZn.diag
[2025-12-15 19:35:12] -rw-r--r-- 1 boinc boinc     12444 Dec 15 19:35 stderr.txt
[2025-12-15 19:35:12] HITS file was successfully produced:
[2025-12-15 19:35:12] -rw------- 1 boinc boinc 178067268 Dec 15 19:34 shared/HITS.pool.root.1
[2025-12-15 19:35:12]  *** Contents of shared directory: ***
[2025-12-15 19:35:12] total 367884
[2025-12-15 19:35:12] -rw-r--r-- 2 boinc boinc 197070748 Dec 15 18:17 ATLAS.root_0
[2025-12-15 19:35:12] -rw-r--r-- 2 boinc boinc    592395 Dec 15 18:17 input.tar.gz
[2025-12-15 19:35:12] -rw-r--r-- 2 boinc boinc     15847 Dec 15 18:17 start_atlas.sh
[2025-12-15 19:35:12] -rw------- 1 boinc boinc 178067268 Dec 15 19:34 HITS.pool.root.1
[2025-12-15 19:35:12] -rw------- 1 boinc boinc    952320 Dec 15 19:35 result.tar.gz
19:35:13 (2595222): run_atlas exited; CPU time 13200.850002
19:35:13 (2595222): called boinc_finish(0)

</stderr_txt>
]]>

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