Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:51:56 (599906): wrapper (7.7.26015): starting
15:51:56 (599906): wrapper: running run_atlas (--nthreads 6)
[2025-12-15 15:51:56] Arguments: --nthreads 6
[2025-12-15 15:51:56] Threads: 6
[2025-12-15 15:51:56] Checking for CVMFS
[2025-12-15 15:52:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 15:52:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 15:52:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 15:52:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 15:52:42] 2.13.3.0 600125 0 29560 154022 3 1 49152486 52428800 0 130560 0 0 0.000 1337 55 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-12-15 15:52:42] CVMFS is ok
[2025-12-15 15:52:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 15:52:42] Checking for apptainer binary...
[2025-12-15 15:52:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 15:52:42] Running /usr/bin/apptainer --version
[2025-12-15 15:52:42] apptainer version 1.4.4-1.el9
[2025-12-15 15:52:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 15:52:42] testio002
[2025-12-15 15:52:42] apptainer works
[2025-12-15 15:52:42] Set ATHENA_PROC_NUMBER=6
[2025-12-15 15:52:42] Set ATHENA_CORE_NUMBER=6
[2025-12-15 15:52:42] Starting ATLAS job with PandaID=6929440305
[2025-12-15 15:52:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 17:33:23]  *** The last 200 lines of the pilot log: ***
[2025-12-15 17:33:23] 2025-12-15 08:32:44,465 | INFO     | adding to output.list: log.47898763._010952.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/9f/log.47898763._010952.job.log.tg
[2025-12-15 17:33:23] 2025-12-15 08:32:44,465 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6929440305/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 17:33:23] 2025-12-15 08:32:44,465 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-15 17:33:23] 2025-12-15 08:32:44,466 | INFO     | summary of transferred files:
[2025-12-15 17:33:23] 2025-12-15 08:32:44,466 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6929440305/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 17:33:23] 2025-12-15 08:32:44,466 | INFO     |  -- lfn=log.47898763._010952.job.log.tgz.1, status_code=0, status=transferred
[2025-12-15 17:33:23] 2025-12-15 08:32:44,466 | INFO     | stage-out finished correctly
[2025-12-15 17:33:23] 2025-12-15 08:32:44,477 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-15 17:33:23] 2025-12-15 08:32:44,492 | WARNING  | maxPSS not found in memory monitor output
[2025-12-15 17:33:23] 2025-12-15 08:32:44,526 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-15 17:33:23] 2025-12-15 08:32:44,536 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2368150 B
[2025-12-15 17:33:23] 2025-12-15 08:32:44,557 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15829 B
[2025-12-15 17:33:23] 2025-12-15 08:32:44,567 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-15 17:33:23] 2025-12-15 08:32:44,578 | INFO     | time since job start (5919s) is within the limit (174528.0s)
[2025-12-15 17:33:23] 2025-12-15 08:32:44,589 | INFO     | sufficient remaining disk space (296702967808 B)
[2025-12-15 17:33:23] 2025-12-15 08:32:44,589 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-15 17:33:23] 2025-12-15 08:32:44,590 | INFO     | size of work directory /var/lib/boinc/slots/9/PanDA_Pilot-6929440305: 2671073 B (within 2768240640 B limit)
[2025-12-15 17:33:23] 2025-12-15 08:32:44,590 | INFO     | pfn file=/var/lib/boinc/slots/9/PanDA_Pilot-6929440305/HITS.47898763._010952.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-15 17:33:23] 2025-12-15 08:32:44,590 | INFO     | total size of present files: 0 B (workdir size: 2671073 B)
[2025-12-15 17:33:23] 2025-12-15 08:32:44,590 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/9/PanDA_Pilot-6929440305/HITS.47898763._010952.pool.root.1 since it does not exist
[2025-12-15 17:33:23] 2025-12-15 08:32:44,632 | INFO     | number of running child processes to parent process 625423: 1
[2025-12-15 17:33:23] 2025-12-15 08:32:44,633 | INFO     | maximum number of monitored processes: 6
[2025-12-15 17:33:23] 2025-12-15 08:32:46,586 | INFO     | time since job start (5921s) is within the limit (174528.0s)
[2025-12-15 17:33:23] 2025-12-15 08:32:47,135 | INFO     | monitor loop #433: job 0:6929440305 is in state 'finished'
[2025-12-15 17:33:23] 2025-12-15 08:32:47,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 17:33:23] 2025-12-15 08:32:47,377 | INFO     | job 6929440305 has state=finished
[2025-12-15 17:33:23] 2025-12-15 08:32:47,377 | INFO     | preparing for final server update for job 6929440305 in state='finished'
[2025-12-15 17:33:23] 2025-12-15 08:32:47,377 | INFO     | this job has now completed (state=finished)
[2025-12-15 17:33:23] 2025-12-15 08:32:47,377 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-15 17:33:23] 2025-12-15 08:32:47,377 | INFO     | log transfer has been attempted: DONE
[2025-12-15 17:33:23] 2025-12-15 08:32:47,377 | INFO     | job 6929440305 has finished - writing final server update
[2025-12-15 17:33:23] 2025-12-15 08:32:47,378 | INFO     | total number of processed events: 400 (read)
[2025-12-15 17:33:23] 2025-12-15 08:32:47,378 | INFO     | executing command: lscpu
[2025-12-15 17:33:23] 2025-12-15 08:32:47,389 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-15 17:33:23] 2025-12-15 08:32:48,591 | INFO     | time since job start (5923s) is within the limit (174528.0s)
[2025-12-15 17:33:23] 2025-12-15 08:32:49,638 | INFO     | monitor loop #434: job 0:6929440305 is in state 'finished'
[2025-12-15 17:33:23] 2025-12-15 08:32:49,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 17:33:23] 2025-12-15 08:32:50,596 | INFO     | time since job start (5925s) is within the limit (174528.0s)
[2025-12-15 17:33:23] 2025-12-15 08:32:51,299 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-15 17:33:23] 2025-12-15 08:32:51,300 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3994.2544375
[2025-12-15 17:33:23] 2025-12-15 08:32:51,301 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6929440305/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 17:33:23] 2025-12-15 08:32:51,301 | INFO     | extracted standard info from prmon json
[2025-12-15 17:33:23] 2025-12-15 08:32:51,301 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 17:33:23] 2025-12-15 08:32:51,301 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 17:33:23] 2025-12-15 08:32:51,301 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 17:33:23] 2025-12-15 08:32:51,301 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 17:33:23] 2025-12-15 08:32:51,303 | INFO     | fitting pss+swap vs Time
[2025-12-15 17:33:23] 2025-12-15 08:32:51,303 | INFO     | sum of square deviations: 226022842.5
[2025-12-15 17:33:23] 2025-12-15 08:32:51,303 | INFO     | sum of deviations: 2388761006.5000005
[2025-12-15 17:33:23] 2025-12-15 08:32:51,303 | INFO     | mean x: 1765784682.5
[2025-12-15 17:33:23] 2025-12-15 08:32:51,303 | INFO     | mean y: 2545193.211111111
[2025-12-15 17:33:23] 2025-12-15 08:32:51,303 | INFO     | intersect: -18659451748.230698
[2025-12-15 17:33:23] 2025-12-15 08:32:51,303 | INFO     | chi2: 0.016103628168006635
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | current memory leak: 10.57 B/s (using 90 data points, chi2=0.02)
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | could have reported an average CPU frequency of 4180 MHz (7 samples)
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | ..............................
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | . Timing measurements:
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | . get job = 0 s
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | . initial setup = 7 s
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | . payload setup = 2 s
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | . stage-in = 0 s
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | . payload execution = 5899 s
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | . stage-out = 0 s
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | . log creation = 0 s
[2025-12-15 17:33:23] 2025-12-15 08:32:51,304 | INFO     | ..............................
[2025-12-15 17:33:23] 2025-12-15 08:32:51,358 | INFO     | 
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | job summary report
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | --------------------------------------------------
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | PanDA job id: 6929440305
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | task id: 47898763
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | errors: (none)
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | pilot state: finished 
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | transexitcode: 0
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | exeerrorcode: 0
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | exeerrordiag: 
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | exitcode: 0
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | exitmsg: OK
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | cpuconsumptiontime: 32815 s
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | nevents: 400
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | neventsw: 0
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | pid: 625423
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | pgrp: 625423
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | corecount: 6
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | event service: False
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | sizes: {0: 2283951, 2: 2284213, 11: 2284241, 5905: 2311007, 5906: 2320061, 5913: 2320227}
[2025-12-15 17:33:23] 2025-12-15 08:32:51,359 | INFO     | --------------------------------------------------
[2025-12-15 17:33:23] 2025-12-15 08:32:51,360 | INFO     | 
[2025-12-15 17:33:23] 2025-12-15 08:32:51,360 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-15 17:33:23] 2025-12-15 08:32:51,370 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,370 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 17:33:23] 2025-12-15 08:32:51,372 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,373 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 17:33:23] 2025-12-15 08:32:51,373 | INFO     | job 6929440305 has completed (purged errors)
[2025-12-15 17:33:23] 2025-12-15 08:32:51,373 | INFO     | overall cleanup function is called
[2025-12-15 17:33:23] 2025-12-15 08:32:52,379 | INFO     | --- collectZombieJob: --- 10, [625423]
[2025-12-15 17:33:23] 2025-12-15 08:32:52,379 | INFO     | zombie collector waiting for pid 625423
[2025-12-15 17:33:23] 2025-12-15 08:32:52,379 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 17:33:23] 2025-12-15 08:32:52,379 | INFO     | collected zombie processes
[2025-12-15 17:33:23] 2025-12-15 08:32:52,379 | INFO     | will attempt to kill all subprocesses of pid=625423
[2025-12-15 17:33:23] 2025-12-15 08:32:52,415 | INFO     | process IDs to be killed: [625423] (in reverse order)
[2025-12-15 17:33:23] 2025-12-15 08:32:52,435 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 17:33:23] 2025-12-15 08:32:52,435 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 17:33:23] 2025-12-15 08:32:52,436 | INFO     | did not find any defunct processes belonging to 625423
[2025-12-15 17:33:23] 2025-12-15 08:32:52,437 | INFO     | did not find any defunct processes belonging to 625423
[2025-12-15 17:33:23] 2025-12-15 08:32:52,437 | INFO     | ready for new job
[2025-12-15 17:33:23] 2025-12-15 08:32:52,437 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 17:33:23] 2025-12-15 08:32:52,438 | INFO     | ***************************************
[2025-12-15 17:33:23] 2025-12-15 08:32:52,438 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 17:33:23] 2025-12-15 08:32:52,438 | INFO     | ***************************************
[2025-12-15 17:33:23] 2025-12-15 08:32:52,439 | INFO     | 
[2025-12-15 17:33:23] 2025-12-15 08:32:52,439 | INFO     | architecture information:
[2025-12-15 17:33:23] 2025-12-15 08:32:52,439 | INFO     | executing command: cat /etc/os-release
[2025-12-15 17:33:23] 2025-12-15 08:32:52,446 | INFO     | cat /etc/os-release:
[2025-12-15 17:33:23] NAME="CentOS Linux"
[2025-12-15 17:33:23] VERSION="7 (Core)"
[2025-12-15 17:33:23] ID="centos"
[2025-12-15 17:33:23] ID_LIKE="rhel fedora"
[2025-12-15 17:33:23] VERSION_ID="7"
[2025-12-15 17:33:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 17:33:23] ANSI_COLOR="0;31"
[2025-12-15 17:33:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 17:33:23] HOME_URL="https://www.centos.org/"
[2025-12-15 17:33:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 17:33:23] 
[2025-12-15 17:33:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 17:33:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 17:33:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 17:33:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 17:33:23] 
[2025-12-15 17:33:23] 2025-12-15 08:32:52,447 | INFO     | ***************************************
[2025-12-15 17:33:23] 2025-12-15 08:32:52,949 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-15 17:33:23] 2025-12-15 08:32:52,957 | INFO     | sufficient remaining disk space (296707162112 B)
[2025-12-15 17:33:23] 2025-12-15 08:32:52,957 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 17:33:23] 2025-12-15 08:32:52,957 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 17:33:23] 2025-12-15 08:32:52,957 | INFO     | update_server=False
[2025-12-15 17:33:23] 2025-12-15 08:32:52,957 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 17:33:23] 2025-12-15 08:32:52,957 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 17:33:23] 2025-12-15 08:32:52,957 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 17:33:23] 2025-12-15 08:32:53,146 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 17:33:23] 2025-12-15 08:32:53,146 | INFO     | aborting loop
[2025-12-15 17:33:23] 2025-12-15 08:32:53,487 | INFO     | all payload control threads have been joined
[2025-12-15 17:33:23] 2025-12-15 08:32:53,579 | INFO     | all job control threads have been joined
[2025-12-15 17:33:23] 2025-12-15 08:32:53,813 | INFO     | all data control threads have been joined
[2025-12-15 17:33:23] 2025-12-15 08:32:53,962 | INFO     | [job] queue monitor thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:53,962 | INFO     | [job] retrieve thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:53,964 | INFO     | [payload] failed_post thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:53,998 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:54,151 | INFO     | [job] job monitor thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:54,492 | INFO     | [payload] control thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:54,568 | INFO     | [payload] validate_post thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:54,584 | INFO     | [job] control thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:54,704 | INFO     | [data] copytool_in thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:54,818 | INFO     | [data] control thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:54,940 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:54,962 | INFO     | [data] copytool_out thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:55,089 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 17:33:23] 2025-12-15 08:32:55,353 | INFO     | [job] validate thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:55,390 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:32:59,094 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:33:03,075 | INFO     | job.realtimelogging is not enabled
[2025-12-15 17:33:23] 2025-12-15 08:33:04,080 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 17:33:23] 2025-12-15 08:33:14,873 | INFO     | [monitor] cgroup control has ended
[2025-12-15 17:33:23] 2025-12-15 08:33:15,681 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139792665962304)>', '<ExcThread(monitor, started 139792125785856)>']
[2025-12-15 17:33:23] 2025-12-15 08:33:20,706 | INFO     | all workflow threads have been joined
[2025-12-15 17:33:23] 2025-12-15 08:33:20,706 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 17:33:23] 2025-12-15 08:33:20,707 | INFO     | traces error code: 0
[2025-12-15 17:33:23] 2025-12-15 08:33:20,707 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 17:33:23] 2025-12-15 08:33:23,694 | INFO     | PID=608163 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-15 17:33:23] 2025-12-15 08:33:23,695 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 17:33:23] 2025-12-15 08:33:23,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 17:33:23] 2025-12-15 08:33:23,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 17:33:23] 2025-12-15 08:33:23,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 17:33:23] 2025-12-15 08:33:23,695 | INFO     | [monitor] control thread has ended
[2025-12-15 17:33:23] 2025-12-15 08:33:23,775 [wrapper] ==== pilot stdout END ====
[2025-12-15 17:33:23] 2025-12-15 08:33:23,784 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 17:33:23] 2025-12-15 08:33:23,785 [wrapper] pilotpid: 608163
[2025-12-15 17:33:23] 2025-12-15 08:33:23,788 [wrapper] Pilot exit status: 0
[2025-12-15 17:33:23] 2025-12-15 08:33:23,793 [wrapper] pandaids: 6929440305
[2025-12-15 17:33:23] 2025-12-15 08:33:23,805 [wrapper] cleanup supervisor_pilot  647250 608165
[2025-12-15 17:33:23] 2025-12-15 08:33:23,807 [wrapper] Test setup, not cleaning
[2025-12-15 17:33:23] 2025-12-15 08:33:23,808 [wrapper] apfmon messages muted
[2025-12-15 17:33:23] 2025-12-15 08:33:23,810 [wrapper] ==== wrapper stdout END ====
[2025-12-15 17:33:23] 2025-12-15 08:33:23,811 [wrapper] ==== wrapper stderr END ====
[2025-12-15 17:33:23]  *** Error codes and diagnostics ***
[2025-12-15 17:33:23]     "exeErrorCode": 0,
[2025-12-15 17:33:23]     "exeErrorDiag": "",
[2025-12-15 17:33:23]     "pilotErrorCode": 0,
[2025-12-15 17:33:23]     "pilotErrorDiag": "",
[2025-12-15 17:33:23]  *** Listing of results directory ***
[2025-12-15 17:33:23] total 435300
[2025-12-15 17:33:23] -rwx------. 1 boinc boinc     36322 Dec 14 20:00 runpilot2-wrapper.sh
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc    579449 Dec 14 20:00 pilot3.tar.gz
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc      5112 Dec 14 20:01 queuedata.json
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc       100 Dec 15 15:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 17:33:23] -rwxr-xr-x. 1 boinc boinc      7986 Dec 15 15:51 run_atlas
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc       105 Dec 15 15:51 job.xml
[2025-12-15 17:33:23] -rw-r--r--. 2 boinc boinc 221726423 Dec 15 15:51 EVNT.47898761._000489.pool.root.1
[2025-12-15 17:33:23] -rw-r--r--. 2 boinc boinc     15847 Dec 15 15:51 start_atlas.sh
[2025-12-15 17:33:23] drwxrwx--x. 2 boinc boinc        68 Dec 15 15:51 shared
[2025-12-15 17:33:23] -rw-r--r--. 2 boinc boinc    592396 Dec 15 15:51 input.tar.gz
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc      9643 Dec 15 15:51 init_data.xml
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc         0 Dec 15 15:51 boinc_lockfile
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc      2504 Dec 15 15:52 pandaJob.out
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc    991016 Dec 15 15:53 agis_schedconf.cvmfs.json
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc   1516240 Dec 15 15:54 agis_ddmendpoints.agis.ALL.json
[2025-12-15 17:33:23] drwx------. 5 boinc boinc      4096 Dec 15 15:54 pilot3
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc 217806983 Dec 15 17:32 HITS.47898763._010952.pool.root.1
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc        95 Dec 15 17:32 pilot_heartbeat.json
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc      1023 Dec 15 17:32 memory_monitor_summary.json
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc    295265 Dec 15 17:32 log.47898763._010952.job.log.tgz.1
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc       529 Dec 15 17:32 boinc_task_state.xml
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc      7785 Dec 15 17:32 heartbeat.json
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc      8192 Dec 15 17:33 boinc_mmap_file
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc        27 Dec 15 17:33 wrapper_checkpoint.txt
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc       746 Dec 15 17:33 pilotlog.txt
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc    858878 Dec 15 17:33 log.47898763._010952.job.log.1
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc       357 Dec 15 17:33 output.list
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc       620 Dec 15 17:33 runtime_log
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc   1177600 Dec 15 17:33 result.tar.gz
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc      8775 Dec 15 17:33 runtime_log.err
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc       643 Dec 15 17:33 8pYLDmE1yo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9BRKDmEBc9Jn.diag
[2025-12-15 17:33:23] -rw-r--r--. 1 boinc boinc     22238 Dec 15 17:33 stderr.txt
[2025-12-15 17:33:23] HITS file was successfully produced:
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc 217806983 Dec 15 17:32 shared/HITS.pool.root.1
[2025-12-15 17:33:23]  *** Contents of shared directory: ***
[2025-12-15 17:33:23] total 430984
[2025-12-15 17:33:23] -rw-r--r--. 2 boinc boinc 221726423 Dec 15 15:51 ATLAS.root_0
[2025-12-15 17:33:23] -rw-r--r--. 2 boinc boinc     15847 Dec 15 15:51 start_atlas.sh
[2025-12-15 17:33:23] -rw-r--r--. 2 boinc boinc    592396 Dec 15 15:51 input.tar.gz
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc 217806983 Dec 15 17:32 HITS.pool.root.1
[2025-12-15 17:33:23] -rw-------. 1 boinc boinc   1177600 Dec 15 17:33 result.tar.gz
17:33:25 (599906): run_atlas exited; CPU time 32846.797612
17:33:25 (599906): called boinc_finish(0)

</stderr_txt>
]]>

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