Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:52:04 (13239): wrapper (7.7.26015): starting
00:52:04 (13239): wrapper: running run_atlas (--nthreads 12)
[2025-12-15 00:52:04] Arguments: --nthreads 12
[2025-12-15 00:52:04] Threads: 12
[2025-12-15 00:52:04] Checking for CVMFS
[2025-12-15 00:52:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 00:52:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 00:52:04] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 00:52:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 00:52:04] 2.11.2.0 2937 314645 95572 154020 0 59 14036407 20275201 1 130560 1 139241578 99.966 18880319 15819 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-15 00:52:04] CVMFS is ok
[2025-12-15 00:52:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 00:52:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 00:52:04] Further information can be found at the LHC@home message board.
[2025-12-15 00:52:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 00:52:04] Checking for apptainer binary...
[2025-12-15 00:52:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 00:52:04] Running /usr/bin/apptainer --version
[2025-12-15 00:52:04] apptainer version 1.3.2-1.el7
[2025-12-15 00:52:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 00:52:06] c-205-8.aglt2.org
[2025-12-15 00:52:06] apptainer works
[2025-12-15 00:52:06] Set ATHENA_PROC_NUMBER=12
[2025-12-15 00:52:06] Set ATHENA_CORE_NUMBER=12
[2025-12-15 00:52:06] Starting ATLAS job with PandaID=6931148739
[2025-12-15 00:52:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 02:02:33]  *** The last 200 lines of the pilot log: ***
[2025-12-15 02:02:33]  is_tar=False
[2025-12-15 02:02:33]  lfn=log.47898896._000996.job.log.tgz.1
[2025-12-15 02:02:33]  mtime=0
[2025-12-15 02:02:33]  protocol_id=None
[2025-12-15 02:02:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-15 02:02:33]  replicas=None
[2025-12-15 02:02:33]  scope=mc23_13p6TeV
[2025-12-15 02:02:33]  status=None
[2025-12-15 02:02:33]  status_code=0
[2025-12-15 02:02:33]  storage_token=
[2025-12-15 02:02:33]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6931148739/log.47898896._000996.job.log.tgz.1
[2025-12-15 02:02:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/3e/log.47898896._000996.job.log.tgz.1
[2025-12-15 02:02:33]  workdir=None
[2025-12-15 02:02:33] ]
[2025-12-15 02:02:33] 2025-12-15 07:01:46,401 | INFO     | transferring file log.47898896._000996.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6931148739/log.47898896._000996.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-15 02:02:33] 2025-12-15 07:01:46,401 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6931148739/log.47898896._000996.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898896._000996.job
[2025-12-15 02:02:33] 2025-12-15 07:01:46,424 | INFO     | adding to output.list: log.47898896._000996.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/3e/log.47898896._000996.job.log.tg
[2025-12-15 02:02:33] 2025-12-15 07:01:46,425 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-15 02:02:33] 2025-12-15 07:01:46,425 | INFO     | summary of transferred files:
[2025-12-15 02:02:33] 2025-12-15 07:01:46,425 | INFO     |  -- lfn=log.47898896._000996.job.log.tgz.1, status_code=0, status=transferred
[2025-12-15 02:02:33] 2025-12-15 07:01:46,425 | INFO     | stage-out finished correctly
[2025-12-15 02:02:33] 2025-12-15 07:01:46,508 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-15 02:02:33] 2025-12-15 07:01:46,601 | INFO     | job 6931148739 has state=finished
[2025-12-15 02:02:33] 2025-12-15 07:01:46,601 | INFO     | preparing for final server update for job 6931148739 in state='finished'
[2025-12-15 02:02:33] 2025-12-15 07:01:46,601 | INFO     | this job has now completed (state=finished)
[2025-12-15 02:02:33] 2025-12-15 07:01:46,602 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-15 02:02:33] 2025-12-15 07:01:46,602 | INFO     | log transfer has been attempted: DONE
[2025-12-15 02:02:33] 2025-12-15 07:01:46,602 | INFO     | job 6931148739 has finished - writing final server update
[2025-12-15 02:02:33] 2025-12-15 07:01:46,602 | INFO     | total number of processed events: 400 (read)
[2025-12-15 02:02:33] 2025-12-15 07:01:46,603 | INFO     | executing command: lscpu
[2025-12-15 02:02:33] 2025-12-15 07:01:46,630 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-15 02:02:33] 2025-12-15 07:01:47,380 | INFO     | time since job start (4166s) is within the limit (174528.0s)
[2025-12-15 02:02:33] 2025-12-15 07:01:49,385 | INFO     | time since job start (4168s) is within the limit (174528.0s)
[2025-12-15 02:02:33] 2025-12-15 07:01:50,499 | INFO     | PID=16921 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-15 02:02:33] 2025-12-15 07:01:51,247 | WARNING  | process 23330 can no longer be monitored (due to stat problems) - aborting
[2025-12-15 02:02:33] 2025-12-15 07:01:51,247 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931148739/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 02:02:33] 2025-12-15 07:01:51,336 | INFO     | number of running child processes to parent process 23330: 1
[2025-12-15 02:02:33] 2025-12-15 07:01:51,336 | INFO     | maximum number of monitored processes: 6
[2025-12-15 02:02:33] 2025-12-15 07:01:51,499 | INFO     | time since job start (4170s) is within the limit (174528.0s)
[2025-12-15 02:02:33] 2025-12-15 07:01:52,448 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-15 02:02:33] 2025-12-15 07:01:52,452 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.75
[2025-12-15 02:02:33] 2025-12-15 07:01:52,454 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6931148739/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 02:02:33] 2025-12-15 07:01:52,455 | INFO     | extracted standard info from prmon json
[2025-12-15 02:02:33] 2025-12-15 07:01:52,455 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 02:02:33] 2025-12-15 07:01:52,455 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 02:02:33] 2025-12-15 07:01:52,456 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 02:02:33] 2025-12-15 07:01:52,456 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 02:02:33] 2025-12-15 07:01:52,458 | INFO     | fitting pss+swap vs Time
[2025-12-15 02:02:33] 2025-12-15 07:01:52,458 | INFO     | sum of square deviations: 70364110.0
[2025-12-15 02:02:33] 2025-12-15 07:01:52,459 | INFO     | sum of deviations: -6463311485.999998
[2025-12-15 02:02:33] 2025-12-15 07:01:52,459 | INFO     | mean x: 1765780105.0
[2025-12-15 02:02:33] 2025-12-15 07:01:52,459 | INFO     | mean y: 2760149.1967213117
[2025-12-15 02:02:33] 2025-12-15 07:01:52,459 | INFO     | intersect: 162198897276.445
[2025-12-15 02:02:33] 2025-12-15 07:01:52,459 | INFO     | chi2: 0.05400456044529968
[2025-12-15 02:02:33] 2025-12-15 07:01:52,459 | INFO     | current memory leak: -91.86 B/s (using 61 data points, chi2=0.05)
[2025-12-15 02:02:33] 2025-12-15 07:01:52,460 | INFO     | could have reported an average CPU frequency of 2023 MHz (6 samples)
[2025-12-15 02:02:33] 2025-12-15 07:01:52,460 | INFO     | ..............................
[2025-12-15 02:02:33] 2025-12-15 07:01:52,460 | INFO     | . Timing measurements:
[2025-12-15 02:02:33] 2025-12-15 07:01:52,460 | INFO     | . get job = 0 s
[2025-12-15 02:02:33] 2025-12-15 07:01:52,460 | INFO     | . initial setup = 2 s
[2025-12-15 02:02:33] 2025-12-15 07:01:52,460 | INFO     | . payload setup = 7 s
[2025-12-15 02:02:33] 2025-12-15 07:01:52,460 | INFO     | . stage-in = 0 s
[2025-12-15 02:02:33] 2025-12-15 07:01:52,460 | INFO     | . payload execution = 4137 s
[2025-12-15 02:02:33] 2025-12-15 07:01:52,461 | INFO     | . stage-out = 0 s
[2025-12-15 02:02:33] 2025-12-15 07:01:52,461 | INFO     | . log creation = 0 s
[2025-12-15 02:02:33] 2025-12-15 07:01:52,461 | INFO     | ..............................
[2025-12-15 02:02:33] 2025-12-15 07:01:52,542 | INFO     | 
[2025-12-15 02:02:33] 2025-12-15 07:01:52,543 | INFO     | job summary report
[2025-12-15 02:02:33] 2025-12-15 07:01:52,543 | INFO     | --------------------------------------------------
[2025-12-15 02:02:33] 2025-12-15 07:01:52,543 | INFO     | PanDA job id: 6931148739
[2025-12-15 02:02:33] 2025-12-15 07:01:52,543 | INFO     | task id: 47898896
[2025-12-15 02:02:33] 2025-12-15 07:01:52,543 | INFO     | errors: (none)
[2025-12-15 02:02:33] 2025-12-15 07:01:52,544 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 02:02:33] 2025-12-15 07:01:52,544 | INFO     | pilot state: finished 
[2025-12-15 02:02:33] 2025-12-15 07:01:52,544 | INFO     | transexitcode: 0
[2025-12-15 02:02:33] 2025-12-15 07:01:52,544 | INFO     | exeerrorcode: 0
[2025-12-15 02:02:33] 2025-12-15 07:01:52,544 | INFO     | exeerrordiag: 
[2025-12-15 02:02:33] 2025-12-15 07:01:52,544 | INFO     | exitcode: 0
[2025-12-15 02:02:33] 2025-12-15 07:01:52,545 | INFO     | exitmsg: OK
[2025-12-15 02:02:33] 2025-12-15 07:01:52,545 | INFO     | cpuconsumptiontime: 44147 s
[2025-12-15 02:02:33] 2025-12-15 07:01:52,545 | INFO     | nevents: 400
[2025-12-15 02:02:33] 2025-12-15 07:01:52,545 | INFO     | neventsw: 0
[2025-12-15 02:02:33] 2025-12-15 07:01:52,545 | INFO     | pid: 23330
[2025-12-15 02:02:33] 2025-12-15 07:01:52,545 | INFO     | pgrp: 23330
[2025-12-15 02:02:33] 2025-12-15 07:01:52,546 | INFO     | corecount: 12
[2025-12-15 02:02:33] 2025-12-15 07:01:52,546 | INFO     | event service: False
[2025-12-15 02:02:33] 2025-12-15 07:01:52,546 | INFO     | sizes: {0: 2283718, 1: 2283973, 6: 2284235, 12: 2284263, 4148: 2310114, 4150: 2319296, 4156: 2319434}
[2025-12-15 02:02:33] 2025-12-15 07:01:52,546 | INFO     | --------------------------------------------------
[2025-12-15 02:02:33] 2025-12-15 07:01:52,546 | INFO     | 
[2025-12-15 02:02:33] 2025-12-15 07:01:52,546 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-15 02:02:33] 2025-12-15 07:01:52,571 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,571 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,571 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,571 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,571 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,572 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,572 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,572 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,572 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,572 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,572 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,573 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,573 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,574 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,574 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 02:02:33] 2025-12-15 07:01:52,574 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,574 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 02:02:33] 2025-12-15 07:01:52,574 | INFO     | job 6931148739 has completed (purged errors)
[2025-12-15 02:02:33] 2025-12-15 07:01:52,574 | INFO     | overall cleanup function is called
[2025-12-15 02:02:33] 2025-12-15 07:01:53,583 | INFO     | --- collectZombieJob: --- 10, [23330]
[2025-12-15 02:02:33] 2025-12-15 07:01:53,583 | INFO     | zombie collector waiting for pid 23330
[2025-12-15 02:02:33] 2025-12-15 07:01:53,583 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 02:02:33] 2025-12-15 07:01:53,583 | INFO     | collected zombie processes
[2025-12-15 02:02:33] 2025-12-15 07:01:53,584 | INFO     | will attempt to kill all subprocesses of pid=23330
[2025-12-15 02:02:33] 2025-12-15 07:01:53,679 | INFO     | process IDs to be killed: [23330] (in reverse order)
[2025-12-15 02:02:33] 2025-12-15 07:01:53,730 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 02:02:33] 2025-12-15 07:01:53,731 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 02:02:33] 2025-12-15 07:01:53,734 | INFO     | did not find any defunct processes belonging to 23330
[2025-12-15 02:02:33] 2025-12-15 07:01:53,738 | INFO     | did not find any defunct processes belonging to 23330
[2025-12-15 02:02:33] 2025-12-15 07:01:53,738 | INFO     | ready for new job
[2025-12-15 02:02:33] 2025-12-15 07:01:53,738 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 02:02:33] 2025-12-15 07:01:53,740 | INFO     | ***************************************
[2025-12-15 02:02:33] 2025-12-15 07:01:53,740 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 02:02:33] 2025-12-15 07:01:53,740 | INFO     | ***************************************
[2025-12-15 02:02:33] 2025-12-15 07:01:53,740 | INFO     | 
[2025-12-15 02:02:33] 2025-12-15 07:01:53,741 | INFO     | architecture information:
[2025-12-15 02:02:33] 2025-12-15 07:01:53,741 | INFO     | executing command: cat /etc/os-release
[2025-12-15 02:02:33] 2025-12-15 07:01:53,755 | INFO     | cat /etc/os-release:
[2025-12-15 02:02:33] NAME="CentOS Linux"
[2025-12-15 02:02:33] VERSION="7 (Core)"
[2025-12-15 02:02:33] ID="centos"
[2025-12-15 02:02:33] ID_LIKE="rhel fedora"
[2025-12-15 02:02:33] VERSION_ID="7"
[2025-12-15 02:02:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 02:02:33] ANSI_COLOR="0;31"
[2025-12-15 02:02:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 02:02:33] HOME_URL="https://www.centos.org/"
[2025-12-15 02:02:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 02:02:33] 
[2025-12-15 02:02:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 02:02:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 02:02:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 02:02:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 02:02:33] 
[2025-12-15 02:02:33] 2025-12-15 07:01:53,755 | INFO     | ***************************************
[2025-12-15 02:02:33] 2025-12-15 07:01:54,258 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-15 02:02:33] 2025-12-15 07:01:54,274 | INFO     | sufficient remaining disk space (29409411072 B)
[2025-12-15 02:02:33] 2025-12-15 07:01:54,275 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 02:02:33] 2025-12-15 07:01:54,275 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 02:02:33] 2025-12-15 07:01:54,275 | INFO     | update_server=False
[2025-12-15 02:02:33] 2025-12-15 07:01:54,275 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 02:02:33] 2025-12-15 07:01:54,276 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 02:02:33] 2025-12-15 07:01:54,387 | INFO     | all data control threads have been joined
[2025-12-15 02:02:33] 2025-12-15 07:01:54,518 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 02:02:33] 2025-12-15 07:01:54,820 | INFO     | all payload control threads have been joined
[2025-12-15 02:02:33] 2025-12-15 07:01:54,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 02:02:33] 2025-12-15 07:01:54,845 | INFO     | aborting loop
[2025-12-15 02:02:33] 2025-12-15 07:01:55,280 | INFO     | [job] retrieve thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:55,281 | INFO     | [job] queue monitor thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:55,391 | INFO     | [data] control thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:55,452 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:55,505 | INFO     | [data] copytool_in thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:55,607 | INFO     | all job control threads have been joined
[2025-12-15 02:02:33] 2025-12-15 07:01:55,822 | INFO     | [payload] control thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:55,846 | INFO     | [job] job monitor thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:55,897 | INFO     | [payload] validate_post thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:56,165 | INFO     | [job] validate thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:56,177 | INFO     | [payload] failed_post thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:56,503 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:56,519 | INFO     | [data] copytool_out thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:56,612 | INFO     | [job] control thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:56,717 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:56,745 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:01:57,096 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 02:02:33] 2025-12-15 07:02:01,102 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 02:02:33] 2025-12-15 07:02:24,707 | INFO     | PID=16921 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-15 02:02:33] 2025-12-15 07:02:24,708 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 02:02:33] 2025-12-15 07:02:24,708 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 02:02:33] 2025-12-15 07:02:24,708 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 02:02:33] 2025-12-15 07:02:27,259 | INFO     | [monitor] cgroup control has ended
[2025-12-15 02:02:33] 2025-12-15 07:02:28,446 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140046044591936)>', '<ExcThread(monitor, started 140045386245888)>']
[2025-12-15 02:02:33] 2025-12-15 07:02:28,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 02:02:33] 2025-12-15 07:02:28,724 | INFO     | [monitor] control thread has ended
[2025-12-15 02:02:33] 2025-12-15 07:02:33,452 | INFO     | all workflow threads have been joined
[2025-12-15 02:02:33] 2025-12-15 07:02:33,452 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 02:02:33] 2025-12-15 07:02:33,453 | INFO     | traces error code: 0
[2025-12-15 02:02:33] 2025-12-15 07:02:33,453 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 02:02:33] 2025-12-15 07:02:33,543 [wrapper] ==== pilot stdout END ====
[2025-12-15 02:02:33] 2025-12-15 07:02:33,547 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 02:02:33] 2025-12-15 07:02:33,550 [wrapper] pilotpid: 16921
[2025-12-15 02:02:33] 2025-12-15 07:02:33,554 [wrapper] Pilot exit status: 0
[2025-12-15 02:02:33] 2025-12-15 07:02:33,571 [wrapper] pandaids: 6931148739
[2025-12-15 02:02:33] 2025-12-15 07:02:33,612 [wrapper] cleanup supervisor_pilot 13637 16922
[2025-12-15 02:02:33] 2025-12-15 07:02:33,616 [wrapper] Test setup, not cleaning
[2025-12-15 02:02:33] 2025-12-15 07:02:33,620 [wrapper] apfmon messages muted
[2025-12-15 02:02:33] 2025-12-15 07:02:33,623 [wrapper] ==== wrapper stdout END ====
[2025-12-15 02:02:33] 2025-12-15 07:02:33,628 [wrapper] ==== wrapper stderr END ====
[2025-12-15 02:02:33]  *** Error codes and diagnostics ***
[2025-12-15 02:02:33]     "exeErrorCode": 0,
[2025-12-15 02:02:33]     "exeErrorDiag": "",
[2025-12-15 02:02:33]     "pilotErrorCode": 0,
[2025-12-15 02:02:33]     "pilotErrorDiag": "",
[2025-12-15 02:02:33]  *** Listing of results directory ***
[2025-12-15 02:02:33] total 375776
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas    579449 Dec 14 20:16 pilot3.tar.gz
[2025-12-15 02:02:33] -rwx------ 1 boincer umatlas     36322 Dec 14 20:19 runpilot2-wrapper.sh
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas      5112 Dec 14 20:22 queuedata.json
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas       100 Dec 15 00:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 02:02:33] -rwxr-xr-x 1 boincer umatlas      7986 Dec 15 00:52 run_atlas
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas       105 Dec 15 00:52 job.xml
[2025-12-15 02:02:33] -rw-r--r-- 2 boincer umatlas 199350245 Dec 15 00:52 EVNT.47898894._000040.pool.root.1
[2025-12-15 02:02:33] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 00:52 start_atlas.sh
[2025-12-15 02:02:33] drwxrwx--x 2 boincer umatlas      4096 Dec 15 00:52 shared
[2025-12-15 02:02:33] -rw-r--r-- 2 boincer umatlas    592395 Dec 15 00:52 input.tar.gz
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas         0 Dec 15 00:52 boinc_lockfile
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas      2504 Dec 15 00:52 pandaJob.out
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas        57 Dec 15 00:52 setup.sh.local
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas    991016 Dec 15 00:52 agis_schedconf.cvmfs.json
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas   1516240 Dec 15 00:52 agis_ddmendpoints.agis.ALL.json
[2025-12-15 02:02:33] drwx------ 5 boincer umatlas      4096 Dec 15 00:52 pilot3
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas      5951 Dec 15 02:00 init_data.xml
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas 179541882 Dec 15 02:01 HITS.47898896._000996.pool.root.1
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas       530 Dec 15 02:01 boinc_task_state.xml
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas      1043 Dec 15 02:01 memory_monitor_summary.json
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas    382632 Dec 15 02:01 log.47898896._000996.job.log.tgz.1
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas      7841 Dec 15 02:01 heartbeat.json
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas      8192 Dec 15 02:02 boinc_mmap_file
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas        27 Dec 15 02:02 wrapper_checkpoint.txt
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas        95 Dec 15 02:02 pilot_heartbeat.json
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas      4746 Dec 15 02:02 pilotlog.txt
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas    608376 Dec 15 02:02 log.47898896._000996.job.log.1
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas       357 Dec 15 02:02 output.list
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas       620 Dec 15 02:02 runtime_log
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas   1013760 Dec 15 02:02 result.tar.gz
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas      9339 Dec 15 02:02 runtime_log.err
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas       658 Dec 15 02:02 4DnLDmtQCp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzsWKDmUoYPwn.diag
[2025-12-15 02:02:33] -rw-r--r-- 1 boincer umatlas     21695 Dec 15 02:02 stderr.txt
[2025-12-15 02:02:33] HITS file was successfully produced:
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas 179541882 Dec 15 02:01 shared/HITS.pool.root.1
[2025-12-15 02:02:33]  *** Contents of shared directory: ***
[2025-12-15 02:02:33] total 371608
[2025-12-15 02:02:33] -rw-r--r-- 2 boincer umatlas 199350245 Dec 15 00:52 ATLAS.root_0
[2025-12-15 02:02:33] -rw-r--r-- 2 boincer umatlas     15847 Dec 15 00:52 start_atlas.sh
[2025-12-15 02:02:33] -rw-r--r-- 2 boincer umatlas    592395 Dec 15 00:52 input.tar.gz
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas 179541882 Dec 15 02:01 HITS.pool.root.1
[2025-12-15 02:02:33] -rw------- 1 boincer umatlas   1013760 Dec 15 02:02 result.tar.gz
02:02:35 (13239): run_atlas exited; CPU time 44127.777818
02:02:35 (13239): called boinc_finish(0)

</stderr_txt>
]]>

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