Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:32 (405590): wrapper (7.7.26015): starting
00:05:32 (405590): wrapper: running run_atlas (--nthreads 9)
[2025-12-15 00:05:32] Arguments: --nthreads 9
[2025-12-15 00:05:32] Threads: 9
[2025-12-15 00:05:32] Checking for CVMFS
[2025-12-15 00:05:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 00:05:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 00:05:34] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 00:05:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 00:05:35] 2.13.3.0 8702 56829 383872 154019 2 305 13845671 21042177 14120 16776704 0 229556532 99.377 341872613 32324 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-15 00:05:35] CVMFS is ok
[2025-12-15 00:05:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 00:05:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 00:05:35] Further information can be found at the LHC@home message board.
[2025-12-15 00:05:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 00:05:35] Checking for apptainer binary...
[2025-12-15 00:05:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 00:05:35] Running /usr/bin/apptainer --version
[2025-12-15 00:05:35] apptainer version 1.4.5-2.el9
[2025-12-15 00:05:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 00:05:36] c-16-12.aglt2.org
[2025-12-15 00:05:36] apptainer works
[2025-12-15 00:05:36] Set ATHENA_PROC_NUMBER=9
[2025-12-15 00:05:36] Set ATHENA_CORE_NUMBER=9
[2025-12-15 00:05:36] Starting ATLAS job with PandaID=6929467590
[2025-12-15 00:05:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 12:10:23]  *** The last 200 lines of the pilot log: ***
[2025-12-15 12:10:24] 2025-12-15 17:09:33,973 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.861875
[2025-12-15 12:10:24] 2025-12-15 17:09:34,059 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6929467590/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 12:10:24] 2025-12-15 17:09:34,072 | INFO     | extracted standard info from prmon json
[2025-12-15 12:10:24] 2025-12-15 17:09:34,072 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 12:10:24] 2025-12-15 17:09:34,072 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 12:10:24] 2025-12-15 17:09:34,073 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 12:10:24] 2025-12-15 17:09:34,073 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 12:10:24] 2025-12-15 17:09:34,092 | INFO     | fitting pss+swap vs Time
[2025-12-15 12:10:24] 2025-12-15 17:09:34,095 | INFO     | sum of square deviations: 110041157661.643
[2025-12-15 12:10:24] 2025-12-15 17:09:34,129 | INFO     | time since job start (43363s) is within the limit (174528.0s)
[2025-12-15 12:10:24] 2025-12-15 17:09:34,138 | INFO     | sum of deviations: 554838537641.2772
[2025-12-15 12:10:24] 2025-12-15 17:09:34,138 | INFO     | mean x: 1765796975.289548
[2025-12-15 12:10:24] 2025-12-15 17:09:34,138 | INFO     | mean y: 2518670.7401129943
[2025-12-15 12:10:24] 2025-12-15 17:09:34,138 | INFO     | intersect: -8900806524.670368
[2025-12-15 12:10:24] 2025-12-15 17:09:34,139 | INFO     | chi2: 5.266496977551983
[2025-12-15 12:10:24] 2025-12-15 17:09:34,141 | INFO     | sum of square deviations: 107726252188.50383
[2025-12-15 12:10:24] 2025-12-15 17:09:34,155 | INFO     | sum of deviations: 595084798102.1182
[2025-12-15 12:10:24] 2025-12-15 17:09:34,155 | INFO     | mean x: 1765796822.7951636
[2025-12-15 12:10:24] 2025-12-15 17:09:34,155 | INFO     | mean y: 2521304.79943101
[2025-12-15 12:10:24] 2025-12-15 17:09:34,155 | INFO     | intersect: -9751821990.683369
[2025-12-15 12:10:24] 2025-12-15 17:09:34,156 | INFO     | chi2: 4.584454078598479
[2025-12-15 12:10:24] 2025-12-15 17:09:34,157 | INFO     | current chi2=4.584454078598479 (change=12.95059888690067 %)
[2025-12-15 12:10:24] 2025-12-15 17:09:34,157 | INFO     | right removable region: 702
[2025-12-15 12:10:24] 2025-12-15 17:09:34,158 | INFO     | sum of square deviations: 107725954265.09283
[2025-12-15 12:10:24] 2025-12-15 17:09:34,172 | INFO     | sum of deviations: 334348242765.18
[2025-12-15 12:10:24] 2025-12-15 17:09:34,172 | INFO     | mean x: 1765797127.7937412
[2025-12-15 12:10:24] 2025-12-15 17:09:34,173 | INFO     | mean y: 2533185.904694168
[2025-12-15 12:10:24] 2025-12-15 17:09:34,173 | INFO     | intersect: -5477958221.995024
[2025-12-15 12:10:24] 2025-12-15 17:09:34,174 | INFO     | chi2: 1.851371683783885
[2025-12-15 12:10:24] 2025-12-15 17:09:34,174 | INFO     | current chi2=1.851371683783885 (change=64.84624045783741 %)
[2025-12-15 12:10:24] 2025-12-15 17:09:34,175 | INFO     | sum of square deviations: 105443791350.69362
[2025-12-15 12:10:24] 2025-12-15 17:09:34,194 | INFO     | sum of deviations: 229117597978.60468
[2025-12-15 12:10:24] 2025-12-15 17:09:34,195 | INFO     | mean x: 1765797280.2865329
[2025-12-15 12:10:24] 2025-12-15 17:09:34,195 | INFO     | mean y: 2540210.191977077
[2025-12-15 12:10:24] 2025-12-15 17:09:34,195 | INFO     | intersect: -3834340332.4549947
[2025-12-15 12:10:24] 2025-12-15 17:09:34,196 | INFO     | chi2: 1.0860207923590013
[2025-12-15 12:10:24] 2025-12-15 17:09:34,196 | INFO     | current chi2=1.0860207923590013 (change=41.33966713051581 %)
[2025-12-15 12:10:24] 2025-12-15 17:09:34,202 | INFO     | sum of square deviations: 103194052934.66081
[2025-12-15 12:10:24] 2025-12-15 17:09:34,229 | INFO     | sum of deviations: 169549196475.36365
[2025-12-15 12:10:24] 2025-12-15 17:09:34,229 | INFO     | mean x: 1765797432.7806637
[2025-12-15 12:10:24] 2025-12-15 17:09:34,230 | INFO     | mean y: 2544245.8181818184
[2025-12-15 12:10:24] 2025-12-15 17:09:34,230 | INFO     | intersect: -2898684336.1795173
[2025-12-15 12:10:24] 2025-12-15 17:09:34,256 | INFO     | chi2: 0.8657281017130956
[2025-12-15 12:10:24] 2025-12-15 17:09:34,256 | INFO     | current chi2=0.8657281017130956 (change=20.284389782942988 %)
[2025-12-15 12:10:24] 2025-12-15 17:09:34,257 | INFO     | left removable region: 30
[2025-12-15 12:10:24] 2025-12-15 17:09:34,258 | INFO     | sum of square deviations: 94093990746.71281
[2025-12-15 12:10:24] 2025-12-15 17:09:34,401 | INFO     | sum of deviations: 127464912334.50438
[2025-12-15 12:10:24] 2025-12-15 17:09:34,401 | INFO     | mean x: 1765797707.2842262
[2025-12-15 12:10:24] 2025-12-15 17:09:34,401 | INFO     | mean y: 2552993.0758928573
[2025-12-15 12:10:24] 2025-12-15 17:09:34,402 | INFO     | intersect: -2389494024.7334332
[2025-12-15 12:10:24] 2025-12-15 17:09:34,403 | INFO     | chi2: 0.011977828991455663
[2025-12-15 12:10:24] 2025-12-15 17:09:34,413 | INFO     | current memory leak: 1.35 B/s (using 672 data points, chi2=0.01)
[2025-12-15 12:10:24] 2025-12-15 17:09:34,414 | INFO     | could have reported an average CPU frequency of 2899 MHz (27 samples)
[2025-12-15 12:10:24] 2025-12-15 17:09:34,414 | INFO     | ..............................
[2025-12-15 12:10:24] 2025-12-15 17:09:34,415 | INFO     | . Timing measurements:
[2025-12-15 12:10:24] 2025-12-15 17:09:34,415 | INFO     | . get job = 0 s
[2025-12-15 12:10:24] 2025-12-15 17:09:34,415 | INFO     | . initial setup = 7 s
[2025-12-15 12:10:24] 2025-12-15 17:09:34,415 | INFO     | . payload setup = 61 s
[2025-12-15 12:10:24] 2025-12-15 17:09:34,415 | INFO     | . stage-in = 1 s
[2025-12-15 12:10:24] 2025-12-15 17:09:34,415 | INFO     | . payload execution = 43174 s
[2025-12-15 12:10:24] 2025-12-15 17:09:34,415 | INFO     | . stage-out = 5 s
[2025-12-15 12:10:24] 2025-12-15 17:09:34,416 | INFO     | . log creation = 1 s
[2025-12-15 12:10:24] 2025-12-15 17:09:34,416 | INFO     | ..............................
[2025-12-15 12:10:24] 2025-12-15 17:09:34,684 | INFO     | 
[2025-12-15 12:10:24] 2025-12-15 17:09:34,684 | INFO     | job summary report
[2025-12-15 12:10:24] 2025-12-15 17:09:34,685 | INFO     | --------------------------------------------------
[2025-12-15 12:10:24] 2025-12-15 17:09:34,685 | INFO     | PanDA job id: 6929467590
[2025-12-15 12:10:24] 2025-12-15 17:09:34,685 | INFO     | task id: 47898763
[2025-12-15 12:10:24] 2025-12-15 17:09:34,685 | INFO     | errors: (none)
[2025-12-15 12:10:24] 2025-12-15 17:09:34,685 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 12:10:24] 2025-12-15 17:09:34,685 | INFO     | pilot state: finished 
[2025-12-15 12:10:24] 2025-12-15 17:09:34,685 | INFO     | transexitcode: 0
[2025-12-15 12:10:24] 2025-12-15 17:09:34,686 | INFO     | exeerrorcode: 0
[2025-12-15 12:10:24] 2025-12-15 17:09:34,686 | INFO     | exeerrordiag: 
[2025-12-15 12:10:24] 2025-12-15 17:09:34,686 | INFO     | exitcode: 0
[2025-12-15 12:10:24] 2025-12-15 17:09:34,686 | INFO     | exitmsg: OK
[2025-12-15 12:10:24] 2025-12-15 17:09:34,686 | INFO     | cpuconsumptiontime: 107507 s
[2025-12-15 12:10:24] 2025-12-15 17:09:34,686 | INFO     | nevents: 400
[2025-12-15 12:10:24] 2025-12-15 17:09:34,687 | INFO     | neventsw: 0
[2025-12-15 12:10:24] 2025-12-15 17:09:34,687 | INFO     | pid: 446366
[2025-12-15 12:10:24] 2025-12-15 17:09:34,687 | INFO     | pgrp: 446366
[2025-12-15 12:10:24] 2025-12-15 17:09:34,687 | INFO     | corecount: 9
[2025-12-15 12:10:24] 2025-12-15 17:09:34,687 | INFO     | event service: False
[2025-12-15 12:10:24] 2025-12-15 17:09:34,687 | INFO     | sizes: {0: 2283122, 1: 2283807, 2: 2283807, 3: 2284034, 4: 2284034, 14: 2284062, 25: 2284218, 37: 2284246, 44: 2284536, 48: 2284564, 43240: 2327542, 43241: 2327821
[2025-12-15 12:10:24] 2025-12-15 17:09:34,688 | INFO     | --------------------------------------------------
[2025-12-15 12:10:24] 2025-12-15 17:09:34,688 | INFO     | 
[2025-12-15 12:10:24] 2025-12-15 17:09:34,688 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-15 12:10:24] 2025-12-15 17:09:34,715 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,721 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,721 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,721 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,722 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,722 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,722 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,722 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,722 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,722 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,723 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,723 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,724 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 12:10:24] 2025-12-15 17:09:34,759 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 12:10:24] 2025-12-15 17:09:34,760 | INFO     | job 6929467590 has completed (purged errors)
[2025-12-15 12:10:24] 2025-12-15 17:09:34,760 | INFO     | overall cleanup function is called
[2025-12-15 12:10:24] 2025-12-15 17:09:35,774 | INFO     | --- collectZombieJob: --- 10, [446366]
[2025-12-15 12:10:24] 2025-12-15 17:09:35,775 | INFO     | zombie collector waiting for pid 446366
[2025-12-15 12:10:24] 2025-12-15 17:09:35,778 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 12:10:24] 2025-12-15 17:09:35,778 | INFO     | collected zombie processes
[2025-12-15 12:10:24] 2025-12-15 17:09:35,778 | INFO     | will attempt to kill all subprocesses of pid=446366
[2025-12-15 12:10:24] 2025-12-15 17:09:37,088 | INFO     | process IDs to be killed: [446366] (in reverse order)
[2025-12-15 12:10:24] 2025-12-15 17:09:37,396 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 12:10:24] 2025-12-15 17:09:37,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 12:10:24] 2025-12-15 17:09:37,477 | INFO     | did not find any defunct processes belonging to 446366
[2025-12-15 12:10:24] 2025-12-15 17:09:37,508 | INFO     | did not find any defunct processes belonging to 446366
[2025-12-15 12:10:24] 2025-12-15 17:09:37,508 | INFO     | ready for new job
[2025-12-15 12:10:24] 2025-12-15 17:09:37,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 12:10:24] 2025-12-15 17:09:37,512 | INFO     | ***************************************
[2025-12-15 12:10:24] 2025-12-15 17:09:37,512 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 12:10:24] 2025-12-15 17:09:37,513 | INFO     | ***************************************
[2025-12-15 12:10:24] 2025-12-15 17:09:37,513 | INFO     | 
[2025-12-15 12:10:24] 2025-12-15 17:09:37,515 | INFO     | architecture information:
[2025-12-15 12:10:24] 2025-12-15 17:09:37,515 | INFO     | executing command: cat /etc/os-release
[2025-12-15 12:10:24] 2025-12-15 17:09:37,589 | INFO     | cat /etc/os-release:
[2025-12-15 12:10:24] NAME="CentOS Linux"
[2025-12-15 12:10:24] VERSION="7 (Core)"
[2025-12-15 12:10:24] ID="centos"
[2025-12-15 12:10:24] ID_LIKE="rhel fedora"
[2025-12-15 12:10:24] VERSION_ID="7"
[2025-12-15 12:10:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 12:10:24] ANSI_COLOR="0;31"
[2025-12-15 12:10:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 12:10:24] HOME_URL="https://www.centos.org/"
[2025-12-15 12:10:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 12:10:24] 
[2025-12-15 12:10:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 12:10:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 12:10:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 12:10:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 12:10:24] 
[2025-12-15 12:10:24] 2025-12-15 17:09:37,589 | INFO     | ***************************************
[2025-12-15 12:10:24] 2025-12-15 17:09:38,092 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-15 12:10:24] 2025-12-15 17:09:38,128 | INFO     | sufficient remaining disk space (52989788160 B)
[2025-12-15 12:10:24] 2025-12-15 17:09:38,128 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 12:10:24] 2025-12-15 17:09:38,128 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 12:10:24] 2025-12-15 17:09:38,129 | INFO     | update_server=False
[2025-12-15 12:10:24] 2025-12-15 17:09:38,129 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 12:10:24] 2025-12-15 17:09:38,144 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-15 12:10:24] 2025-12-15 17:09:38,144 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-15 12:10:24] 2025-12-15 17:09:38,144 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 12:10:24] 2025-12-15 17:09:38,145 | INFO     | will abort loop
[2025-12-15 12:10:24] 2025-12-15 17:09:38,174 | INFO     | all job control threads have been joined
[2025-12-15 12:10:24] 2025-12-15 17:09:38,780 | INFO     | all data control threads have been joined
[2025-12-15 12:10:24] 2025-12-15 17:09:38,971 | INFO     | all payload control threads have been joined
[2025-12-15 12:10:24] 2025-12-15 17:09:39,135 | INFO     | [job] retrieve thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:39,154 | INFO     | [job] job monitor thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:39,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 12:10:24] 2025-12-15 17:09:39,181 | INFO     | [job] control thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:39,257 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:39,385 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:39,433 | INFO     | [payload] validate_post thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:39,528 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:39,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 12:10:24] 2025-12-15 17:09:39,789 | INFO     | [data] control thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:39,891 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:39,977 | INFO     | [payload] control thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:40,337 | INFO     | [data] copytool_in thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:40,387 | INFO     | [payload] failed_post thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:40,391 | INFO     | [job] validate thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:40,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 12:10:24] 2025-12-15 17:09:40,773 | INFO     | [job] queue monitor thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:41,188 | INFO     | [data] copytool_out thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:09:44,444 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 12:10:24] 2025-12-15 17:10:08,128 | INFO     | PID=415403 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-15 12:10:24] 2025-12-15 17:10:08,128 | INFO     | .. there are 20 such processes running
[2025-12-15 12:10:24] 2025-12-15 17:10:08,128 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 12:10:24] 2025-12-15 17:10:08,129 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 12:10:24] 2025-12-15 17:10:08,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 12:10:24] 2025-12-15 17:10:16,949 | INFO     | [monitor] cgroup control has ended
[2025-12-15 12:10:24] 2025-12-15 17:10:17,569 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140105960920896)>', '<ExcThread(monitor, started 140105222174464)>']
[2025-12-15 12:10:24] 2025-12-15 17:10:18,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 12:10:24] 2025-12-15 17:10:18,192 | INFO     | [monitor] control thread has ended
[2025-12-15 12:10:24] 2025-12-15 17:10:22,595 | INFO     | all workflow threads have been joined
[2025-12-15 12:10:24] 2025-12-15 17:10:22,595 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 12:10:24] 2025-12-15 17:10:22,596 | INFO     | traces error code: 0
[2025-12-15 12:10:24] 2025-12-15 17:10:22,596 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 12:10:24] 2025-12-15 17:10:23,064 [wrapper] ==== pilot stdout END ====
[2025-12-15 12:10:24] 2025-12-15 17:10:23,079 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 12:10:24] 2025-12-15 17:10:23,108 [wrapper] pilotpid: 415403
[2025-12-15 12:10:24] 2025-12-15 17:10:23,142 [wrapper] Pilot exit status: 0
[2025-12-15 12:10:24] 2025-12-15 17:10:23,283 [wrapper] pandaids: 6929467590
[2025-12-15 12:10:24] 2025-12-15 17:10:23,452 [wrapper] cleanup supervisor_pilot 2956483 415404
[2025-12-15 12:10:24] 2025-12-15 17:10:23,459 [wrapper] Test setup, not cleaning
[2025-12-15 12:10:24] 2025-12-15 17:10:23,485 [wrapper] apfmon messages muted
[2025-12-15 12:10:24] 2025-12-15 17:10:23,522 [wrapper] ==== wrapper stdout END ====
[2025-12-15 12:10:24] 2025-12-15 17:10:23,558 [wrapper] ==== wrapper stderr END ====
[2025-12-15 12:10:24]  *** Error codes and diagnostics ***
[2025-12-15 12:10:24]     "exeErrorCode": 0,
[2025-12-15 12:10:24]     "exeErrorDiag": "",
[2025-12-15 12:10:24]     "pilotErrorCode": 0,
[2025-12-15 12:10:24]     "pilotErrorDiag": "",
[2025-12-15 12:10:24]  *** Listing of results directory ***
[2025-12-15 12:10:24] total 445440
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas      5112 Dec 14 15:38 queuedata.json
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas    579449 Dec 14 15:38 pilot3.tar.gz
[2025-12-15 12:10:24] -rwx------. 1 boincer umatlas     36322 Dec 14 15:38 runpilot2-wrapper.sh
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas       100 Dec 15 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 12:10:24] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 15 00:05 run_atlas
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas       105 Dec 15 00:05 job.xml
[2025-12-15 12:10:24] -rw-r--r--. 2 boincer umatlas 226394733 Dec 15 00:05 EVNT.47898761._000561.pool.root.1
[2025-12-15 12:10:24] -rw-r--r--. 2 boincer umatlas     15847 Dec 15 00:05 start_atlas.sh
[2025-12-15 12:10:24] drwxrwx--x. 2 boincer umatlas      4096 Dec 15 00:05 shared
[2025-12-15 12:10:24] -rw-r--r--. 2 boincer umatlas    592389 Dec 15 00:05 input.tar.gz
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas         0 Dec 15 00:05 boinc_lockfile
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas      2503 Dec 15 00:05 pandaJob.out
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas        57 Dec 15 00:05 setup.sh.local
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas    991016 Dec 15 00:06 agis_schedconf.cvmfs.json
[2025-12-15 12:10:24] drwx------. 5 boincer umatlas      4096 Dec 15 00:06 pilot3
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas      6523 Dec 15 12:03 init_data.xml
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas 214524267 Dec 15 12:08 HITS.47898763._012753.pool.root.1
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas       532 Dec 15 12:08 boinc_task_state.xml
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas      1040 Dec 15 12:08 memory_monitor_summary.json
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas   1516240 Dec 15 12:09 agis_ddmendpoints.agis.ALL.json
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas    792889 Dec 15 12:09 log.47898763._012753.job.log.tgz.1
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas        95 Dec 15 12:09 pilot_heartbeat.json
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas      7817 Dec 15 12:09 heartbeat.json
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas      8192 Dec 15 12:10 boinc_mmap_file
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas        29 Dec 15 12:10 wrapper_checkpoint.txt
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas      5009 Dec 15 12:10 pilotlog.txt
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas   4854707 Dec 15 12:10 log.47898763._012753.job.log.1
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas       357 Dec 15 12:10 output.list
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas       620 Dec 15 12:10 runtime_log
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas   5662720 Dec 15 12:10 result.tar.gz
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas      9338 Dec 15 12:10 runtime_log.err
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas       658 Dec 15 12:10 PFkNDmO27o8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLJWKDmqILtMm.diag
[2025-12-15 12:10:24] -rw-r--r--. 1 boincer umatlas     21221 Dec 15 12:10 stderr.txt
[2025-12-15 12:10:24] HITS file was successfully produced:
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas 214524267 Dec 15 12:08 shared/HITS.pool.root.1
[2025-12-15 12:10:24]  *** Contents of shared directory: ***
[2025-12-15 12:10:24] total 436724
[2025-12-15 12:10:24] -rw-r--r--. 2 boincer umatlas 226394733 Dec 15 00:05 ATLAS.root_0
[2025-12-15 12:10:24] -rw-r--r--. 2 boincer umatlas     15847 Dec 15 00:05 start_atlas.sh
[2025-12-15 12:10:24] -rw-r--r--. 2 boincer umatlas    592389 Dec 15 00:05 input.tar.gz
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas 214524267 Dec 15 12:08 HITS.pool.root.1
[2025-12-15 12:10:24] -rw-------. 1 boincer umatlas   5662720 Dec 15 12:10 result.tar.gz
12:10:25 (405590): run_atlas exited; CPU time 109522.738424
12:10:25 (405590): called boinc_finish(0)

</stderr_txt>
]]>

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