Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:25 (1136117): wrapper (7.7.26015): starting
00:02:25 (1136117): wrapper: running run_atlas (--nthreads 12)
[2025-12-15 00:02:25] Arguments: --nthreads 12
[2025-12-15 00:02:25] Threads: 12
[2025-12-15 00:02:25] Checking for CVMFS
[2025-12-15 00:02:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 00:02:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 00:02:26] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 00:02:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 00:02:26] 2.13.2.0 6751 61260 237076 154019 1 716 39957577 40960000 22201 16776704 0 209366935 99.567 253073941 37986 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-15 00:02:26] CVMFS is ok
[2025-12-15 00:02:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 00:02:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 00:02:26] Further information can be found at the LHC@home message board.
[2025-12-15 00:02:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 00:02:26] Checking for apptainer binary...
[2025-12-15 00:02:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 00:02:26] Running /usr/bin/apptainer --version
[2025-12-15 00:02:26] apptainer version 1.4.4-1.el9
[2025-12-15 00:02:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 00:02:26] c-212-7.aglt2.org
[2025-12-15 00:02:26] apptainer works
[2025-12-15 00:02:26] Set ATHENA_PROC_NUMBER=12
[2025-12-15 00:02:26] Set ATHENA_CORE_NUMBER=12
[2025-12-15 00:02:26] Starting ATLAS job with PandaID=6929410644
[2025-12-15 00:02:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 03:08:37]  *** The last 200 lines of the pilot log: ***
[2025-12-15 03:08:37] 2025-12-15 08:08:03,368 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-15 03:08:37] 2025-12-15 08:08:03,382 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3046.685135416667
[2025-12-15 03:08:37] 2025-12-15 08:08:03,399 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6929410644/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 03:08:37] 2025-12-15 08:08:03,399 | INFO     | extracted standard info from prmon json
[2025-12-15 03:08:37] 2025-12-15 08:08:03,399 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 03:08:37] 2025-12-15 08:08:03,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 03:08:37] 2025-12-15 08:08:03,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 03:08:37] 2025-12-15 08:08:03,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 03:08:37] 2025-12-15 08:08:03,402 | INFO     | fitting pss+swap vs Time
[2025-12-15 03:08:37] 2025-12-15 08:08:03,403 | INFO     | sum of square deviations: 1838704735.0055296
[2025-12-15 03:08:37] 2025-12-15 08:08:03,404 | INFO     | sum of deviations: 49858588876.58565
[2025-12-15 03:08:37] 2025-12-15 08:08:03,404 | INFO     | mean x: 1765780544.1049724
[2025-12-15 03:08:37] 2025-12-15 08:08:03,404 | INFO     | mean y: 2599871.127071823
[2025-12-15 03:08:37] 2025-12-15 08:08:03,404 | INFO     | intersect: -47878565885.776665
[2025-12-15 03:08:37] 2025-12-15 08:08:03,404 | INFO     | chi2: 2.7544590977132346
[2025-12-15 03:08:37] 2025-12-15 08:08:03,404 | INFO     | sum of square deviations: 1690425667.1818223
[2025-12-15 03:08:37] 2025-12-15 08:08:03,405 | INFO     | sum of deviations: 61517993030.22728
[2025-12-15 03:08:37] 2025-12-15 08:08:03,405 | INFO     | mean x: 1765780391.5681818
[2025-12-15 03:08:37] 2025-12-15 08:08:03,405 | INFO     | mean y: 2611552.897727273
[2025-12-15 03:08:37] 2025-12-15 08:08:03,405 | INFO     | intersect: -64257691594.59315
[2025-12-15 03:08:37] 2025-12-15 08:08:03,406 | INFO     | chi2: 1.8720626019176863
[2025-12-15 03:08:37] 2025-12-15 08:08:03,406 | INFO     | current chi2=1.8720626019176863 (change=32.035200541845704 %)
[2025-12-15 03:08:37] 2025-12-15 08:08:03,406 | INFO     | sum of square deviations: 1550375520.5263155
[2025-12-15 03:08:37] 2025-12-15 08:08:03,407 | INFO     | sum of deviations: 59230165016.68417
[2025-12-15 03:08:37] 2025-12-15 08:08:03,407 | INFO     | mean x: 1765780239.0526316
[2025-12-15 03:08:37] 2025-12-15 08:08:03,407 | INFO     | mean y: 2609060.812865497
[2025-12-15 03:08:37] 2025-12-15 08:08:03,407 | INFO     | intersect: -67456824836.0681
[2025-12-15 03:08:37] 2025-12-15 08:08:03,407 | INFO     | chi2: 1.8705289115447796
[2025-12-15 03:08:37] 2025-12-15 08:08:03,407 | INFO     | current chi2=1.8705289115447796 (change=0.08192516486016861 %)
[2025-12-15 03:08:37] 2025-12-15 08:08:03,407 | INFO     | right removable region: 170
[2025-12-15 03:08:37] 2025-12-15 08:08:03,408 | INFO     | sum of square deviations: 1690502306.159083
[2025-12-15 03:08:37] 2025-12-15 08:08:03,408 | INFO     | sum of deviations: 12925161458.863653
[2025-12-15 03:08:37] 2025-12-15 08:08:03,409 | INFO     | mean x: 1765780696.6022727
[2025-12-15 03:08:37] 2025-12-15 08:08:03,409 | INFO     | mean y: 2637567.840909091
[2025-12-15 03:08:37] 2025-12-15 08:08:03,409 | INFO     | intersect: -13498083798.451847
[2025-12-15 03:08:37] 2025-12-15 08:08:03,409 | INFO     | chi2: 1.018313239747234
[2025-12-15 03:08:37] 2025-12-15 08:08:03,409 | INFO     | current chi2=1.018313239747234 (change=63.03037352804974 %)
[2025-12-15 03:08:37] 2025-12-15 08:08:03,409 | INFO     | sum of square deviations: 1550475586.1052651
[2025-12-15 03:08:37] 2025-12-15 08:08:03,410 | INFO     | sum of deviations: 1671356855.3684196
[2025-12-15 03:08:37] 2025-12-15 08:08:03,410 | INFO     | mean x: 1765780849.1052632
[2025-12-15 03:08:37] 2025-12-15 08:08:03,410 | INFO     | mean y: 2649822.2573099416
[2025-12-15 03:08:37] 2025-12-15 08:08:03,410 | INFO     | intersect: -1900798354.339767
[2025-12-15 03:08:37] 2025-12-15 08:08:03,410 | INFO     | chi2: 0.914332146895315
[2025-12-15 03:08:37] 2025-12-15 08:08:03,411 | INFO     | current chi2=0.914332146895315 (change=10.211110765654913 %)
[2025-12-15 03:08:37] 2025-12-15 08:08:03,411 | INFO     | left removable region: 20
[2025-12-15 03:08:37] 2025-12-15 08:08:03,413 | INFO     | sum of square deviations: 1046469735.3933299
[2025-12-15 03:08:37] 2025-12-15 08:08:03,413 | INFO     | sum of deviations: 8859981962.246666
[2025-12-15 03:08:37] 2025-12-15 08:08:03,413 | INFO     | mean x: 1765780818.5266666
[2025-12-15 03:08:37] 2025-12-15 08:08:03,414 | INFO     | mean y: 2668064.3133333335
[2025-12-15 03:08:37] 2025-12-15 08:08:03,414 | INFO     | intersect: -14947392766.205683
[2025-12-15 03:08:37] 2025-12-15 08:08:03,414 | INFO     | chi2: 0.0024517975687671782
[2025-12-15 03:08:37] 2025-12-15 08:08:03,414 | INFO     | current memory leak: 8.47 B/s (using 150 data points, chi2=0.00)
[2025-12-15 03:08:37] 2025-12-15 08:08:03,414 | INFO     | could have reported an average CPU frequency of 3041 MHz (10 samples)
[2025-12-15 03:08:37] 2025-12-15 08:08:03,414 | INFO     | ..............................
[2025-12-15 03:08:37] 2025-12-15 08:08:03,415 | INFO     | . Timing measurements:
[2025-12-15 03:08:37] 2025-12-15 08:08:03,415 | INFO     | . get job = 0 s
[2025-12-15 03:08:37] 2025-12-15 08:08:03,415 | INFO     | . initial setup = 4 s
[2025-12-15 03:08:37] 2025-12-15 08:08:03,415 | INFO     | . payload setup = 25 s
[2025-12-15 03:08:37] 2025-12-15 08:08:03,415 | INFO     | . stage-in = 0 s
[2025-12-15 03:08:37] 2025-12-15 08:08:03,415 | INFO     | . payload execution = 11034 s
[2025-12-15 03:08:37] 2025-12-15 08:08:03,415 | INFO     | . stage-out = 1 s
[2025-12-15 03:08:37] 2025-12-15 08:08:03,415 | INFO     | . log creation = 0 s
[2025-12-15 03:08:37] 2025-12-15 08:08:03,415 | INFO     | ..............................
[2025-12-15 03:08:37] 2025-12-15 08:08:03,543 | INFO     | 
[2025-12-15 03:08:37] 2025-12-15 08:08:03,544 | INFO     | job summary report
[2025-12-15 03:08:37] 2025-12-15 08:08:03,544 | INFO     | --------------------------------------------------
[2025-12-15 03:08:37] 2025-12-15 08:08:03,544 | INFO     | PanDA job id: 6929410644
[2025-12-15 03:08:37] 2025-12-15 08:08:03,544 | INFO     | task id: 47898836
[2025-12-15 03:08:37] 2025-12-15 08:08:03,544 | INFO     | errors: (none)
[2025-12-15 03:08:37] 2025-12-15 08:08:03,544 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 03:08:37] 2025-12-15 08:08:03,544 | INFO     | pilot state: finished 
[2025-12-15 03:08:37] 2025-12-15 08:08:03,544 | INFO     | transexitcode: 0
[2025-12-15 03:08:37] 2025-12-15 08:08:03,544 | INFO     | exeerrorcode: 0
[2025-12-15 03:08:37] 2025-12-15 08:08:03,544 | INFO     | exeerrordiag: 
[2025-12-15 03:08:37] 2025-12-15 08:08:03,544 | INFO     | exitcode: 0
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | exitmsg: OK
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | cpuconsumptiontime: 47927 s
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | nevents: 400
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | neventsw: 0
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | pid: 1153528
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | pgrp: 1153528
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | corecount: 12
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | event service: False
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | sizes: {0: 2283831, 1: 2284030, 11: 2284292, 12: 2284320, 11062: 2313440, 11063: 2313439, 11065: 2322621, 11068: 2322677, 11083: 2322871}
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | --------------------------------------------------
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | 
[2025-12-15 03:08:37] 2025-12-15 08:08:03,545 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-15 03:08:37] 2025-12-15 08:08:03,591 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,591 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,591 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,591 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,591 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,591 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,591 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,592 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,592 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,592 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,592 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,592 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,592 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,592 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,592 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,592 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,592 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,598 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 03:08:37] 2025-12-15 08:08:03,598 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,598 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 03:08:37] 2025-12-15 08:08:03,598 | INFO     | job 6929410644 has completed (purged errors)
[2025-12-15 03:08:37] 2025-12-15 08:08:03,598 | INFO     | overall cleanup function is called
[2025-12-15 03:08:37] 2025-12-15 08:08:03,751 | INFO     | PID=1140573 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 03:08:37] 2025-12-15 08:08:03,751 | INFO     | .. there are 25 such processes running
[2025-12-15 03:08:37] 2025-12-15 08:08:04,615 | INFO     | --- collectZombieJob: --- 10, [1153528]
[2025-12-15 03:08:37] 2025-12-15 08:08:04,615 | INFO     | zombie collector waiting for pid 1153528
[2025-12-15 03:08:37] 2025-12-15 08:08:04,616 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 03:08:37] 2025-12-15 08:08:04,616 | INFO     | collected zombie processes
[2025-12-15 03:08:37] 2025-12-15 08:08:04,616 | INFO     | will attempt to kill all subprocesses of pid=1153528
[2025-12-15 03:08:37] 2025-12-15 08:08:05,102 | INFO     | process IDs to be killed: [1153528] (in reverse order)
[2025-12-15 03:08:37] 2025-12-15 08:08:05,254 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 03:08:37] 2025-12-15 08:08:05,256 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 03:08:37] 2025-12-15 08:08:05,272 | INFO     | did not find any defunct processes belonging to 1153528
[2025-12-15 03:08:37] 2025-12-15 08:08:05,288 | INFO     | did not find any defunct processes belonging to 1153528
[2025-12-15 03:08:37] 2025-12-15 08:08:05,288 | INFO     | ready for new job
[2025-12-15 03:08:37] 2025-12-15 08:08:05,288 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 03:08:37] 2025-12-15 08:08:05,290 | INFO     | ***************************************
[2025-12-15 03:08:37] 2025-12-15 08:08:05,290 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 03:08:37] 2025-12-15 08:08:05,290 | INFO     | ***************************************
[2025-12-15 03:08:37] 2025-12-15 08:08:05,290 | INFO     | 
[2025-12-15 03:08:37] 2025-12-15 08:08:05,295 | INFO     | architecture information:
[2025-12-15 03:08:37] 2025-12-15 08:08:05,305 | INFO     | executing command: cat /etc/os-release
[2025-12-15 03:08:37] 2025-12-15 08:08:05,328 | INFO     | cat /etc/os-release:
[2025-12-15 03:08:37] NAME="CentOS Linux"
[2025-12-15 03:08:37] VERSION="7 (Core)"
[2025-12-15 03:08:37] ID="centos"
[2025-12-15 03:08:37] ID_LIKE="rhel fedora"
[2025-12-15 03:08:37] VERSION_ID="7"
[2025-12-15 03:08:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 03:08:37] ANSI_COLOR="0;31"
[2025-12-15 03:08:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 03:08:37] HOME_URL="https://www.centos.org/"
[2025-12-15 03:08:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 03:08:37] 
[2025-12-15 03:08:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 03:08:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 03:08:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 03:08:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 03:08:37] 
[2025-12-15 03:08:37] 2025-12-15 08:08:05,328 | INFO     | ***************************************
[2025-12-15 03:08:37] 2025-12-15 08:08:05,831 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-15 03:08:37] 2025-12-15 08:08:05,869 | INFO     | sufficient remaining disk space (126208704512 B)
[2025-12-15 03:08:37] 2025-12-15 08:08:05,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 03:08:37] 2025-12-15 08:08:05,869 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 03:08:37] 2025-12-15 08:08:05,870 | INFO     | update_server=False
[2025-12-15 03:08:37] 2025-12-15 08:08:05,870 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 03:08:37] 2025-12-15 08:08:05,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 03:08:37] 2025-12-15 08:08:05,870 | INFO     | aborting loop
[2025-12-15 03:08:37] 2025-12-15 08:08:05,985 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 03:08:37] 2025-12-15 08:08:06,680 | INFO     | all data control threads have been joined
[2025-12-15 03:08:37] 2025-12-15 08:08:06,793 | INFO     | all payload control threads have been joined
[2025-12-15 03:08:37] 2025-12-15 08:08:06,876 | INFO     | [job] retrieve thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:06,876 | INFO     | [job] job monitor thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:07,030 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:07,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 03:08:37] 2025-12-15 08:08:07,494 | INFO     | [payload] failed_post thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:07,565 | INFO     | [data] copytool_in thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:07,567 | INFO     | all job control threads have been joined
[2025-12-15 03:08:37] 2025-12-15 08:08:07,640 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:07,676 | INFO     | [job] validate thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:07,686 | INFO     | [data] control thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:07,732 | INFO     | [payload] validate_post thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:07,799 | INFO     | [payload] control thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:07,991 | INFO     | [data] copytool_out thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:08,242 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:08,277 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:08,561 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 03:08:37] 2025-12-15 08:08:08,574 | INFO     | [job] control thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:09,567 | INFO     | [job] queue monitor thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:11,437 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 03:08:37] 2025-12-15 08:08:11,678 | INFO     | [monitor] cgroup control has ended
[2025-12-15 03:08:37] 2025-12-15 08:08:13,575 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140238730561344)>', '<ExcThread(monitor, started 140238215157504)>']
[2025-12-15 03:08:37] 2025-12-15 08:08:18,601 | INFO     | all workflow threads have been joined
[2025-12-15 03:08:37] 2025-12-15 08:08:18,601 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 03:08:37] 2025-12-15 08:08:18,601 | INFO     | traces error code: 0
[2025-12-15 03:08:37] 2025-12-15 08:08:18,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 03:08:37] 2025-12-15 08:08:36,392 | INFO     | PID=1140573 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 03:08:37] 2025-12-15 08:08:36,392 | INFO     | .. there are 25 such processes running
[2025-12-15 03:08:37] 2025-12-15 08:08:36,392 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 03:08:37] 2025-12-15 08:08:36,393 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 03:08:37] 2025-12-15 08:08:36,393 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 03:08:37] 2025-12-15 08:08:36,393 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 03:08:37] 2025-12-15 08:08:36,393 | INFO     | [monitor] control thread has ended
[2025-12-15 03:08:37] 2025-12-15 08:08:36,582 [wrapper] ==== pilot stdout END ====
[2025-12-15 03:08:37] 2025-12-15 08:08:36,615 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 03:08:37] 2025-12-15 08:08:36,625 [wrapper] pilotpid: 1140573
[2025-12-15 03:08:37] 2025-12-15 08:08:36,630 [wrapper] Pilot exit status: 0
[2025-12-15 03:08:37] 2025-12-15 08:08:36,683 [wrapper] pandaids: 6929410644
[2025-12-15 03:08:37] 2025-12-15 08:08:37,139 [wrapper] cleanup supervisor_pilot 2006272 1140574
[2025-12-15 03:08:37] 2025-12-15 08:08:37,157 [wrapper] Test setup, not cleaning
[2025-12-15 03:08:37] 2025-12-15 08:08:37,168 [wrapper] apfmon messages muted
[2025-12-15 03:08:37] 2025-12-15 08:08:37,172 [wrapper] ==== wrapper stdout END ====
[2025-12-15 03:08:37] 2025-12-15 08:08:37,196 [wrapper] ==== wrapper stderr END ====
[2025-12-15 03:08:37]  *** Error codes and diagnostics ***
[2025-12-15 03:08:37]     "exeErrorCode": 0,
[2025-12-15 03:08:37]     "exeErrorDiag": "",
[2025-12-15 03:08:37]     "pilotErrorCode": 0,
[2025-12-15 03:08:37]     "pilotErrorDiag": "",
[2025-12-15 03:08:37]  *** Listing of results directory ***
[2025-12-15 03:08:37] total 417220
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 23:46 pilot3.tar.gz
[2025-12-15 03:08:37] -rwx------. 1 boincer umatlas     36322 Dec 13 23:47 runpilot2-wrapper.sh
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 23:48 queuedata.json
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas       100 Dec 15 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 03:08:37] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 15 00:02 run_atlas
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas       105 Dec 15 00:02 job.xml
[2025-12-15 03:08:37] -rw-r--r--. 2 boincer umatlas 215180386 Dec 15 00:02 EVNT.47898833._000116.pool.root.1
[2025-12-15 03:08:37] -rw-r--r--. 2 boincer umatlas     15847 Dec 15 00:02 start_atlas.sh
[2025-12-15 03:08:37] drwxrwx--x. 2 boincer umatlas      4096 Dec 15 00:02 shared
[2025-12-15 03:08:37] -rw-r--r--. 2 boincer umatlas    592401 Dec 15 00:02 input.tar.gz
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas         0 Dec 15 00:02 boinc_lockfile
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas      2547 Dec 15 00:02 pandaJob.out
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas        57 Dec 15 00:02 setup.sh.local
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas    991016 Dec 15 00:02 agis_schedconf.cvmfs.json
[2025-12-15 03:08:37] drwx------. 5 boincer umatlas      4096 Dec 15 00:02 pilot3
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas      6946 Dec 15 03:04 init_data.xml
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas 204268735 Dec 15 03:07 HITS.47898836._002879.pool.root.1
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas       529 Dec 15 03:07 boinc_task_state.xml
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas      1035 Dec 15 03:07 memory_monitor_summary.json
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas   1516240 Dec 15 03:07 agis_ddmendpoints.agis.ALL.json
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas    461123 Dec 15 03:07 log.47898836._002879.job.log.tgz.1
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas      7769 Dec 15 03:08 heartbeat.json
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas        95 Dec 15 03:08 pilot_heartbeat.json
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas      8192 Dec 15 03:08 boinc_mmap_file
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas       823 Dec 15 03:08 pilotlog.txt
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas        27 Dec 15 03:08 wrapper_checkpoint.txt
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas   1474323 Dec 15 03:08 log.47898836._002879.job.log.1
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas       357 Dec 15 03:08 output.list
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas       620 Dec 15 03:08 runtime_log
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas   1955840 Dec 15 03:08 result.tar.gz
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas      9340 Dec 15 03:08 runtime_log.err
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas       654 Dec 15 03:08 2B9NDmVCto8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZhQKDmJdGDCn.diag
[2025-12-15 03:08:37] -rw-r--r--. 1 boincer umatlas     21292 Dec 15 03:08 stderr.txt
[2025-12-15 03:08:37] HITS file was successfully produced:
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas 204268735 Dec 15 03:07 shared/HITS.pool.root.1
[2025-12-15 03:08:37]  *** Contents of shared directory: ***
[2025-12-15 03:08:37] total 412136
[2025-12-15 03:08:37] -rw-r--r--. 2 boincer umatlas 215180386 Dec 15 00:02 ATLAS.root_0
[2025-12-15 03:08:37] -rw-r--r--. 2 boincer umatlas     15847 Dec 15 00:02 start_atlas.sh
[2025-12-15 03:08:37] -rw-r--r--. 2 boincer umatlas    592401 Dec 15 00:02 input.tar.gz
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas 204268735 Dec 15 03:07 HITS.pool.root.1
[2025-12-15 03:08:37] -rw-------. 1 boincer umatlas   1955840 Dec 15 03:08 result.tar.gz
03:08:39 (1136117): run_atlas exited; CPU time 48256.360393
03:08:39 (1136117): called boinc_finish(0)

</stderr_txt>
]]>

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