Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:51 (2870191): wrapper (7.7.26015): starting
00:00:51 (2870191): wrapper: running run_atlas (--nthreads 12)
[2025-12-15 00:00:51] Arguments: --nthreads 12
[2025-12-15 00:00:51] Threads: 12
[2025-12-15 00:00:51] Checking for CVMFS
[2025-12-15 00:00:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 00:00:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 00:00:52] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 00:00:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 00:00:53] 2.13.3.0 11959 56963 388028 154019 0 568 26242327 32935936 26857 16776704 0 288249627 99.464 387172668 33345 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-15 00:00:53] CVMFS is ok
[2025-12-15 00:00:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 00:00:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 00:00:53] Further information can be found at the LHC@home message board.
[2025-12-15 00:00:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 00:00:53] Checking for apptainer binary...
[2025-12-15 00:00:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 00:00:53] Running /usr/bin/apptainer --version
[2025-12-15 00:00:53] apptainer version 1.4.5-2.el9
[2025-12-15 00:00:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 00:00:54] c6-12-27-3.aglt2.org
[2025-12-15 00:00:54] apptainer works
[2025-12-15 00:00:54] Set ATHENA_PROC_NUMBER=12
[2025-12-15 00:00:54] Set ATHENA_CORE_NUMBER=12
[2025-12-15 00:00:54] Starting ATLAS job with PandaID=6929960965
[2025-12-15 00:00:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 22:18:31]  *** The last 200 lines of the pilot log: ***
[2025-12-15 22:18:31] 2025-12-16 03:17:14,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 22:18:31] 2025-12-16 03:17:16,688 | INFO     | time since job start (80112s) is within the limit (174528.0s)
[2025-12-15 22:18:31] 2025-12-16 03:17:17,293 | INFO     | monitor loop #4958: job 0:6929960965 is in state 'finished'
[2025-12-15 22:18:31] 2025-12-16 03:17:17,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 22:18:31] 2025-12-16 03:17:18,695 | INFO     | time since job start (80114s) is within the limit (174528.0s)
[2025-12-15 22:18:31] 2025-12-16 03:17:19,798 | INFO     | monitor loop #4959: job 0:6929960965 is in state 'finished'
[2025-12-15 22:18:31] 2025-12-16 03:17:19,798 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 22:18:31] 2025-12-16 03:17:20,702 | INFO     | time since job start (80116s) is within the limit (174528.0s)
[2025-12-15 22:18:31] 2025-12-16 03:17:22,321 | INFO     | monitor loop #4960: job 0:6929960965 is in state 'finished'
[2025-12-15 22:18:31] 2025-12-16 03:17:22,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 22:18:31] 2025-12-16 03:17:22,708 | INFO     | time since job start (80118s) is within the limit (174528.0s)
[2025-12-15 22:18:31] 2025-12-16 03:17:24,716 | INFO     | time since job start (80120s) is within the limit (174528.0s)
[2025-12-15 22:18:31] 2025-12-16 03:17:24,826 | INFO     | monitor loop #4961: job 0:6929960965 is in state 'finished'
[2025-12-15 22:18:31] 2025-12-16 03:17:24,826 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 22:18:31] 2025-12-16 03:17:26,727 | INFO     | time since job start (80122s) is within the limit (174528.0s)
[2025-12-15 22:18:31] 2025-12-16 03:17:27,331 | INFO     | monitor loop #4962: job 0:6929960965 is in state 'finished'
[2025-12-15 22:18:31] 2025-12-16 03:17:27,331 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 22:18:31] 2025-12-16 03:17:28,733 | INFO     | time since job start (80124s) is within the limit (174528.0s)
[2025-12-15 22:18:31] 2025-12-16 03:17:28,803 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-15 22:18:31] 2025-12-16 03:17:28,860 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2706.6091145833334
[2025-12-15 22:18:31] 2025-12-16 03:17:28,985 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6929960965/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 22:18:31] 2025-12-16 03:17:28,986 | INFO     | extracted standard info from prmon json
[2025-12-15 22:18:31] 2025-12-16 03:17:28,986 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 22:18:31] 2025-12-16 03:17:28,986 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 22:18:31] 2025-12-16 03:17:29,135 | INFO     | fitting pss+swap vs Time
[2025-12-15 22:18:31] 2025-12-16 03:17:29,143 | INFO     | sum of square deviations: 697073103212.9672
[2025-12-15 22:18:31] 2025-12-16 03:17:29,240 | INFO     | sum of deviations: 6057193433386.873
[2025-12-15 22:18:31] 2025-12-16 03:17:29,240 | INFO     | mean x: 1765815051.6251907
[2025-12-15 22:18:31] 2025-12-16 03:17:29,240 | INFO     | mean y: 4086990.451908397
[2025-12-15 22:18:31] 2025-12-16 03:17:29,241 | INFO     | intersect: -15339903885.081905
[2025-12-15 22:18:31] 2025-12-16 03:17:29,242 | INFO     | chi2: 18.506929130645062
[2025-12-15 22:18:31] 2025-12-16 03:17:29,244 | INFO     | sum of square deviations: 689122370662.7998
[2025-12-15 22:18:31] 2025-12-16 03:17:29,276 | INFO     | sum of deviations: 6747277540013.811
[2025-12-15 22:18:31] 2025-12-16 03:17:29,276 | INFO     | mean x: 1765814899.1333334
[2025-12-15 22:18:31] 2025-12-16 03:17:29,276 | INFO     | mean y: 4100225.983908046
[2025-12-15 22:18:31] 2025-12-16 03:17:29,276 | INFO     | intersect: -17285199491.981636
[2025-12-15 22:18:31] 2025-12-16 03:17:29,278 | INFO     | chi2: 14.73540521498941
[2025-12-15 22:18:31] 2025-12-16 03:17:29,278 | INFO     | current chi2=14.73540521498941 (change=20.37898286113011 %)
[2025-12-15 22:18:31] 2025-12-16 03:17:29,278 | INFO     | right removable region: 1304
[2025-12-15 22:18:31] 2025-12-16 03:17:29,279 | INFO     | sum of square deviations: 689120672422.8004
[2025-12-15 22:18:31] 2025-12-16 03:17:29,316 | INFO     | sum of deviations: 5276749898415.076
[2025-12-15 22:18:31] 2025-12-16 03:17:29,316 | INFO     | mean x: 1765815204.1333334
[2025-12-15 22:18:31] 2025-12-16 03:17:29,316 | INFO     | mean y: 4101956.223754789
[2025-12-15 22:18:31] 2025-12-16 03:17:29,316 | INFO     | intersect: -13517136880.322973
[2025-12-15 22:18:31] 2025-12-16 03:17:29,321 | INFO     | chi2: 13.88524566276439
[2025-12-15 22:18:31] 2025-12-16 03:17:29,322 | INFO     | current chi2=13.88524566276439 (change=24.972719327204675 %)
[2025-12-15 22:18:31] 2025-12-16 03:17:29,322 | INFO     | left removable region: 10
[2025-12-15 22:18:31] 2025-12-16 03:17:29,323 | INFO     | sum of square deviations: 671840694943.81
[2025-12-15 22:18:31] 2025-12-16 03:17:29,412 | INFO     | sum of deviations: 5423936350980.204
[2025-12-15 22:18:31] 2025-12-16 03:17:29,412 | INFO     | mean x: 1765815173.6514683
[2025-12-15 22:18:31] 2025-12-16 03:17:29,412 | INFO     | mean y: 4131596.9760432765
[2025-12-15 22:18:31] 2025-12-16 03:17:29,413 | INFO     | intersect: -14251731707.46647
[2025-12-15 22:18:31] 2025-12-16 03:17:29,414 | INFO     | chi2: 5.735959305753056
[2025-12-15 22:18:31] 2025-12-16 03:17:29,414 | INFO     | current memory leak: 8.07 B/s (using 1294 data points, chi2=5.74)
[2025-12-15 22:18:31] 2025-12-16 03:17:29,423 | INFO     | could have reported an average CPU frequency of 2623 MHz (47 samples)
[2025-12-15 22:18:31] 2025-12-16 03:17:29,423 | INFO     | ..............................
[2025-12-15 22:18:31] 2025-12-16 03:17:29,423 | INFO     | . Timing measurements:
[2025-12-15 22:18:31] 2025-12-16 03:17:29,423 | INFO     | . get job = 0 s
[2025-12-15 22:18:31] 2025-12-16 03:17:29,423 | INFO     | . initial setup = 5 s
[2025-12-15 22:18:31] 2025-12-16 03:17:29,423 | INFO     | . payload setup = 94 s
[2025-12-15 22:18:31] 2025-12-16 03:17:29,424 | INFO     | . stage-in = 0 s
[2025-12-15 22:18:31] 2025-12-16 03:17:29,424 | INFO     | . payload execution = 79926 s
[2025-12-15 22:18:31] 2025-12-16 03:17:29,424 | INFO     | . stage-out = 4 s
[2025-12-15 22:18:31] 2025-12-16 03:17:29,424 | INFO     | . log creation = 1 s
[2025-12-15 22:18:31] 2025-12-16 03:17:29,424 | INFO     | ..............................
[2025-12-15 22:18:31] 2025-12-16 03:17:29,872 | INFO     | 
[2025-12-15 22:18:31] 2025-12-16 03:17:29,872 | INFO     | job summary report
[2025-12-15 22:18:31] 2025-12-16 03:17:29,872 | INFO     | --------------------------------------------------
[2025-12-15 22:18:31] 2025-12-16 03:17:29,872 | INFO     | PanDA job id: 6929960965
[2025-12-15 22:18:31] 2025-12-16 03:17:29,872 | INFO     | task id: 47906435
[2025-12-15 22:18:31] 2025-12-16 03:17:29,872 | INFO     | errors: (none)
[2025-12-15 22:18:31] 2025-12-16 03:17:29,872 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 22:18:31] 2025-12-16 03:17:29,872 | INFO     | pilot state: finished 
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | transexitcode: 0
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | exeerrorcode: 0
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | exeerrordiag: 
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | exitcode: 0
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | exitmsg: OK
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | cpuconsumptiontime: 192344 s
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | nevents: 1000
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | neventsw: 0
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | pid: 2919654
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | pgrp: 2919654
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | corecount: 12
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | event service: False
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | sizes: {0: 2283757, 1: 2284358, 2: 2284442, 3: 2284498, 4: 2284697, 15: 2284697, 26: 2284853, 37: 2284853, 38: 2285143, 49: 2285171, 80024: 2368201, 80029: 2377195
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | --------------------------------------------------
[2025-12-15 22:18:31] 2025-12-16 03:17:29,873 | INFO     | 
[2025-12-15 22:18:31] 2025-12-16 03:17:29,874 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-12-15 22:18:31] 2025-12-16 03:17:29,935 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,935 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,935 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,935 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,936 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,937 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,937 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 22:18:31] 2025-12-16 03:17:29,937 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,937 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 22:18:31] 2025-12-16 03:17:29,937 | INFO     | job 6929960965 has completed (purged errors)
[2025-12-15 22:18:31] 2025-12-16 03:17:29,937 | INFO     | overall cleanup function is called
[2025-12-15 22:18:31] 2025-12-16 03:17:30,979 | INFO     | --- collectZombieJob: --- 10, [2919654]
[2025-12-15 22:18:31] 2025-12-16 03:17:30,979 | INFO     | zombie collector waiting for pid 2919654
[2025-12-15 22:18:31] 2025-12-16 03:17:30,979 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 22:18:31] 2025-12-16 03:17:30,979 | INFO     | collected zombie processes
[2025-12-15 22:18:31] 2025-12-16 03:17:30,979 | INFO     | will attempt to kill all subprocesses of pid=2919654
[2025-12-15 22:18:31] 2025-12-16 03:17:32,660 | INFO     | process IDs to be killed: [2919654] (in reverse order)
[2025-12-15 22:18:31] 2025-12-16 03:17:32,789 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 22:18:31] 2025-12-16 03:17:32,789 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 22:18:31] 2025-12-16 03:17:32,818 | INFO     | did not find any defunct processes belonging to 2919654
[2025-12-15 22:18:31] 2025-12-16 03:17:32,839 | INFO     | did not find any defunct processes belonging to 2919654
[2025-12-15 22:18:31] 2025-12-16 03:17:32,839 | INFO     | ready for new job
[2025-12-15 22:18:31] 2025-12-16 03:17:32,839 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 22:18:31] 2025-12-16 03:17:32,853 | INFO     | ***************************************
[2025-12-15 22:18:31] 2025-12-16 03:17:32,854 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 22:18:31] 2025-12-16 03:17:32,854 | INFO     | ***************************************
[2025-12-15 22:18:31] 2025-12-16 03:17:32,854 | INFO     | 
[2025-12-15 22:18:31] 2025-12-16 03:17:32,863 | INFO     | architecture information:
[2025-12-15 22:18:31] 2025-12-16 03:17:32,872 | INFO     | executing command: cat /etc/os-release
[2025-12-15 22:18:31] 2025-12-16 03:17:32,936 | INFO     | cat /etc/os-release:
[2025-12-15 22:18:31] NAME="CentOS Linux"
[2025-12-15 22:18:31] VERSION="7 (Core)"
[2025-12-15 22:18:31] ID="centos"
[2025-12-15 22:18:31] ID_LIKE="rhel fedora"
[2025-12-15 22:18:31] VERSION_ID="7"
[2025-12-15 22:18:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 22:18:31] ANSI_COLOR="0;31"
[2025-12-15 22:18:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 22:18:31] HOME_URL="https://www.centos.org/"
[2025-12-15 22:18:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 22:18:31] 
[2025-12-15 22:18:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 22:18:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 22:18:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 22:18:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 22:18:31] 
[2025-12-15 22:18:31] 2025-12-16 03:17:32,936 | INFO     | ***************************************
[2025-12-15 22:18:31] 2025-12-16 03:17:33,440 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-12-15 22:18:31] 2025-12-16 03:17:33,503 | INFO     | sufficient remaining disk space (93471113216 B)
[2025-12-15 22:18:31] 2025-12-16 03:17:33,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 22:18:31] 2025-12-16 03:17:33,504 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 22:18:31] 2025-12-16 03:17:33,504 | INFO     | update_server=False
[2025-12-15 22:18:31] 2025-12-16 03:17:33,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 22:18:31] 2025-12-16 03:17:33,505 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 22:18:31] 2025-12-16 03:17:33,505 | INFO     | aborting loop
[2025-12-15 22:18:31] 2025-12-16 03:17:33,551 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 22:18:31] 2025-12-16 03:17:34,382 | INFO     | all payload control threads have been joined
[2025-12-15 22:18:31] 2025-12-16 03:17:34,510 | INFO     | [job] retrieve thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:34,514 | INFO     | [job] job monitor thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:34,515 | INFO     | all data control threads have been joined
[2025-12-15 22:18:31] 2025-12-16 03:17:34,738 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 22:18:31] 2025-12-16 03:17:34,788 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 22:18:31] 2025-12-16 03:17:34,905 | INFO     | [job] validate thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:35,007 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:35,007 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:35,046 | INFO     | all job control threads have been joined
[2025-12-15 22:18:31] 2025-12-16 03:17:35,297 | INFO     | [payload] failed_post thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:35,388 | INFO     | [payload] control thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:35,396 | INFO     | [data] copytool_in thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:35,433 | INFO     | [payload] validate_post thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:35,442 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:35,522 | INFO     | [data] control thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:35,558 | INFO     | [data] copytool_out thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:35,794 | INFO     | [job] queue monitor thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:36,014 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:36,058 | INFO     | [job] control thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:17:38,747 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 22:18:31] 2025-12-16 03:18:02,899 | INFO     | PID=2880534 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 22:18:31] 2025-12-16 03:18:02,899 | INFO     | .. there are 22 such processes running
[2025-12-15 22:18:31] 2025-12-16 03:18:02,900 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 22:18:31] 2025-12-16 03:18:02,900 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 22:18:31] 2025-12-16 03:18:02,900 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 22:18:31] 2025-12-16 03:18:25,302 | INFO     | [monitor] cgroup control has ended
[2025-12-15 22:18:31] 2025-12-16 03:18:25,703 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139927462807360)>', '<ExcThread(monitor, started 139926729381632)>']
[2025-12-15 22:18:31] 2025-12-16 03:18:26,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 22:18:31] 2025-12-16 03:18:26,042 | INFO     | [monitor] control thread has ended
[2025-12-15 22:18:31] 2025-12-16 03:18:30,734 | INFO     | all workflow threads have been joined
[2025-12-15 22:18:31] 2025-12-16 03:18:30,736 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 22:18:31] 2025-12-16 03:18:30,736 | INFO     | traces error code: 0
[2025-12-15 22:18:31] 2025-12-16 03:18:30,736 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 22:18:31] 2025-12-16 03:18:31,166 [wrapper] ==== pilot stdout END ====
[2025-12-15 22:18:31] 2025-12-16 03:18:31,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 22:18:31] 2025-12-16 03:18:31,171 [wrapper] pilotpid: 2880534
[2025-12-15 22:18:31] 2025-12-16 03:18:31,174 [wrapper] Pilot exit status: 0
[2025-12-15 22:18:31] 2025-12-16 03:18:31,186 [wrapper] pandaids: 6929960965
[2025-12-15 22:18:31] 2025-12-16 03:18:31,330 [wrapper] cleanup supervisor_pilot 3364823 2880535
[2025-12-15 22:18:31] 2025-12-16 03:18:31,334 [wrapper] Test setup, not cleaning
[2025-12-15 22:18:31] 2025-12-16 03:18:31,337 [wrapper] apfmon messages muted
[2025-12-15 22:18:31] 2025-12-16 03:18:31,339 [wrapper] ==== wrapper stdout END ====
[2025-12-15 22:18:31] 2025-12-16 03:18:31,341 [wrapper] ==== wrapper stderr END ====
[2025-12-15 22:18:31]  *** Error codes and diagnostics ***
[2025-12-15 22:18:31]     "exeErrorCode": 0,
[2025-12-15 22:18:31]     "exeErrorDiag": "",
[2025-12-15 22:18:31]     "pilotErrorCode": 0,
[2025-12-15 22:18:31]     "pilotErrorDiag": "",
[2025-12-15 22:18:31]  *** Listing of results directory ***
[2025-12-15 22:18:31] total 949160
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 23:46 pilot3.tar.gz
[2025-12-15 22:18:31] -rwx------. 1 boincer umatlas     36322 Dec 13 23:49 runpilot2-wrapper.sh
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 23:50 queuedata.json
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas       100 Dec 15 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 22:18:31] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 15 00:00 run_atlas
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas       105 Dec 15 00:00 job.xml
[2025-12-15 22:18:31] -rw-r--r--. 2 boincer umatlas 327268343 Dec 15 00:00 EVNT.47906432._000002.pool.root.1
[2025-12-15 22:18:31] -rw-r--r--. 2 boincer umatlas     15847 Dec 15 00:00 start_atlas.sh
[2025-12-15 22:18:31] drwxrwx--x. 2 boincer umatlas      4096 Dec 15 00:00 shared
[2025-12-15 22:18:31] -rw-r--r--. 2 boincer umatlas    592603 Dec 15 00:00 input.tar.gz
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas         0 Dec 15 00:00 boinc_lockfile
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas      2867 Dec 15 00:00 pandaJob.out
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas        57 Dec 15 00:00 setup.sh.local
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas    991016 Dec 15 00:01 agis_schedconf.cvmfs.json
[2025-12-15 22:18:31] drwx------. 5 boincer umatlas      4096 Dec 15 00:02 pilot3
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas       533 Dec 15 21:48 boinc_task_state.xml
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas      6880 Dec 15 22:13 init_data.xml
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas 614226598 Dec 15 22:16 HITS.47906435._000014.pool.root.1
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas      1059 Dec 15 22:17 memory_monitor_summary.json
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas        95 Dec 15 22:17 pilot_heartbeat.json
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas   1516240 Dec 15 22:17 agis_ddmendpoints.agis.ALL.json
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas   2910318 Dec 15 22:17 log.47906435._000014.job.log.tgz.1
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas     28723 Dec 15 22:17 heartbeat.json
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas        29 Dec 15 22:18 wrapper_checkpoint.txt
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas      8192 Dec 15 22:18 boinc_mmap_file
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas      4824 Dec 15 22:18 pilotlog.txt
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas  10333585 Dec 15 22:18 log.47906435._000014.job.log.1
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas       353 Dec 15 22:18 output.list
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas       620 Dec 15 22:18 runtime_log
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas  13281280 Dec 15 22:18 result.tar.gz
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas      9355 Dec 15 22:18 runtime_log.err
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas       662 Dec 15 22:18 JMHODmyDto8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3hQKDmFI7fqm.diag
[2025-12-15 22:18:31] -rw-r--r--. 1 boincer umatlas     21737 Dec 15 22:18 stderr.txt
[2025-12-15 22:18:31] HITS file was successfully produced:
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas 614226598 Dec 15 22:16 shared/HITS.pool.root.1
[2025-12-15 22:18:31]  *** Contents of shared directory: ***
[2025-12-15 22:18:31] total 933004
[2025-12-15 22:18:31] -rw-r--r--. 2 boincer umatlas 327268343 Dec 15 00:00 ATLAS.root_0
[2025-12-15 22:18:31] -rw-r--r--. 2 boincer umatlas     15847 Dec 15 00:00 start_atlas.sh
[2025-12-15 22:18:31] -rw-r--r--. 2 boincer umatlas    592603 Dec 15 00:00 input.tar.gz
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas 614226598 Dec 15 22:16 HITS.pool.root.1
[2025-12-15 22:18:31] -rw-------. 1 boincer umatlas  13281280 Dec 15 22:18 result.tar.gz
22:18:54 (2870191): run_atlas exited; CPU time 194082.468414
22:18:54 (2870191): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN