Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:34:03 (3789600): wrapper (7.7.26015): starting
15:34:03 (3789600): wrapper: running run_atlas (--nthreads 2)
[2025-12-15 15:34:03] Arguments: --nthreads 2
[2025-12-15 15:34:03] Threads: 2
[2025-12-15 15:34:03] Checking for CVMFS
[2025-12-15 15:34:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 15:34:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 15:34:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 15:34:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 15:34:03] 2.9.2.0 3022499 3213 60680 154035 1 57 35424950 36864000 0 130560 0 1715925 99.988 110498 5085 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 15:34:03] CVMFS is ok
[2025-12-15 15:34:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 15:34:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 15:34:03] Further information can be found at the LHC@home message board.
[2025-12-15 15:34:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 15:34:03] Checking for apptainer binary...
[2025-12-15 15:34:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 15:34:03] Running /usr/bin/apptainer --version
[2025-12-15 15:34:03] apptainer version 1.4.1-1.1
[2025-12-15 15:34:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 15:34:04] legendA165
[2025-12-15 15:34:04] apptainer works
[2025-12-15 15:34:04] Set ATHENA_PROC_NUMBER=2
[2025-12-15 15:34:04] Set ATHENA_CORE_NUMBER=2
[2025-12-15 15:34:04] Starting ATLAS job with PandaID=6929465679
[2025-12-15 15:34:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 18:25:55]  *** The last 200 lines of the pilot log: ***
[2025-12-15 18:25:55] 2025-12-15 17:25:17,735 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 18:25:55] 2025-12-15 17:25:17,884 | INFO     | time since job start (10260s) is within the limit (174528.0s)
[2025-12-15 18:25:55] 2025-12-15 17:25:19,889 | INFO     | time since job start (10262s) is within the limit (174528.0s)
[2025-12-15 18:25:55] 2025-12-15 17:25:20,238 | INFO     | monitor loop #787: job 0:6929465679 is in state 'finished'
[2025-12-15 18:25:55] 2025-12-15 17:25:20,239 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 18:25:55] 2025-12-15 17:25:21,895 | INFO     | time since job start (10264s) is within the limit (174528.0s)
[2025-12-15 18:25:55] 2025-12-15 17:25:22,741 | INFO     | monitor loop #788: job 0:6929465679 is in state 'finished'
[2025-12-15 18:25:55] 2025-12-15 17:25:22,742 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 18:25:55] 2025-12-15 17:25:22,819 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-15 18:25:55] 2025-12-15 17:25:22,820 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 2800.348
[2025-12-15 18:25:55] 2025-12-15 17:25:22,821 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6929465679/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 18:25:55] 2025-12-15 17:25:22,821 | INFO     | extracted standard info from prmon json
[2025-12-15 18:25:55] 2025-12-15 17:25:22,821 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 18:25:55] 2025-12-15 17:25:22,821 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 18:25:55] 2025-12-15 17:25:22,822 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 18:25:55] 2025-12-15 17:25:22,822 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 18:25:55] 2025-12-15 17:25:22,823 | INFO     | fitting pss+swap vs Time
[2025-12-15 18:25:55] 2025-12-15 17:25:22,824 | INFO     | sum of square deviations: 1470248962.0
[2025-12-15 18:25:55] 2025-12-15 17:25:22,824 | INFO     | sum of deviations: -23963264125.499996
[2025-12-15 18:25:55] 2025-12-15 17:25:22,824 | INFO     | mean x: 1765814376.5
[2025-12-15 18:25:55] 2025-12-15 17:25:22,824 | INFO     | mean y: 2346903.0654761903
[2025-12-15 18:25:55] 2025-12-15 17:25:22,824 | INFO     | intersect: 28782966644.577385
[2025-12-15 18:25:55] 2025-12-15 17:25:22,824 | INFO     | chi2: 1.761360032232133
[2025-12-15 18:25:55] 2025-12-15 17:25:22,825 | INFO     | sum of square deviations: 1342841922.0
[2025-12-15 18:25:55] 2025-12-15 17:25:22,825 | INFO     | sum of deviations: -22992289885.00001
[2025-12-15 18:25:55] 2025-12-15 17:25:22,825 | INFO     | mean x: 1765814224.0
[2025-12-15 18:25:55] 2025-12-15 17:25:22,825 | INFO     | mean y: 2348065.619631902
[2025-12-15 18:25:55] 2025-12-15 17:25:22,825 | INFO     | intersect: 30236817109.299328
[2025-12-15 18:25:55] 2025-12-15 17:25:22,825 | INFO     | chi2: 1.7558572031529829
[2025-12-15 18:25:55] 2025-12-15 17:25:22,826 | INFO     | current chi2=1.7558572031529829 (change=0.31241932248096393 %)
[2025-12-15 18:25:55] 2025-12-15 17:25:22,826 | INFO     | right removable region: 162
[2025-12-15 18:25:55] 2025-12-15 17:25:22,826 | INFO     | sum of square deviations: 1342841922.0
[2025-12-15 18:25:55] 2025-12-15 17:25:22,826 | INFO     | sum of deviations: -43476857570.0
[2025-12-15 18:25:55] 2025-12-15 17:25:22,826 | INFO     | mean x: 1765814529.0
[2025-12-15 18:25:55] 2025-12-15 17:25:22,826 | INFO     | mean y: 2369808.5214723926
[2025-12-15 18:25:55] 2025-12-15 17:25:22,826 | INFO     | intersect: 57173705849.34671
[2025-12-15 18:25:55] 2025-12-15 17:25:22,827 | INFO     | chi2: 0.34138885848228384
[2025-12-15 18:25:55] 2025-12-15 17:25:22,827 | INFO     | current chi2=0.34138885848228384 (change=80.61788321325486 %)
[2025-12-15 18:25:55] 2025-12-15 17:25:22,827 | INFO     | sum of square deviations: 1223016419.5
[2025-12-15 18:25:55] 2025-12-15 17:25:22,827 | INFO     | sum of deviations: -36198486775.999985
[2025-12-15 18:25:55] 2025-12-15 17:25:22,827 | INFO     | mean x: 1765814681.5
[2025-12-15 18:25:55] 2025-12-15 17:25:22,827 | INFO     | mean y: 2360538.101265823
[2025-12-15 18:25:55] 2025-12-15 17:25:22,828 | INFO     | intersect: 52266433512.09814
[2025-12-15 18:25:55] 2025-12-15 17:25:22,828 | INFO     | chi2: 0.3255344809149589
[2025-12-15 18:25:55] 2025-12-15 17:25:22,828 | INFO     | current chi2=0.3255344809149589 (change=4.644081718955012 %)
[2025-12-15 18:25:55] 2025-12-15 17:25:22,828 | INFO     | left removable region: 20
[2025-12-15 18:25:55] 2025-12-15 17:25:22,828 | INFO     | sum of square deviations: 887813855.5
[2025-12-15 18:25:55] 2025-12-15 17:25:22,828 | INFO     | sum of deviations: -19538401473.500004
[2025-12-15 18:25:55] 2025-12-15 17:25:22,829 | INFO     | mean x: 1765814803.5
[2025-12-15 18:25:55] 2025-12-15 17:25:22,829 | INFO     | mean y: 2339641.0774647887
[2025-12-15 18:25:55] 2025-12-15 17:25:22,829 | INFO     | intersect: 38863186816.302155
[2025-12-15 18:25:55] 2025-12-15 17:25:22,829 | INFO     | chi2: 0.24522381276455243
[2025-12-15 18:25:55] 2025-12-15 17:25:22,829 | INFO     | current memory leak: -22.01 B/s (using 142 data points, chi2=0.25)
[2025-12-15 18:25:55] 2025-12-15 17:25:22,829 | INFO     | could have reported an average CPU frequency of 4254 MHz (9 samples)
[2025-12-15 18:25:55] 2025-12-15 17:25:22,829 | INFO     | ..............................
[2025-12-15 18:25:55] 2025-12-15 17:25:22,829 | INFO     | . Timing measurements:
[2025-12-15 18:25:55] 2025-12-15 17:25:22,829 | INFO     | . get job = 0 s
[2025-12-15 18:25:55] 2025-12-15 17:25:22,829 | INFO     | . initial setup = 1 s
[2025-12-15 18:25:55] 2025-12-15 17:25:22,830 | INFO     | . payload setup = 6 s
[2025-12-15 18:25:55] 2025-12-15 17:25:22,830 | INFO     | . stage-in = 0 s
[2025-12-15 18:25:55] 2025-12-15 17:25:22,830 | INFO     | . payload execution = 10229 s
[2025-12-15 18:25:55] 2025-12-15 17:25:22,830 | INFO     | . stage-out = 0 s
[2025-12-15 18:25:55] 2025-12-15 17:25:22,830 | INFO     | . log creation = 0 s
[2025-12-15 18:25:55] 2025-12-15 17:25:22,830 | INFO     | ..............................
[2025-12-15 18:25:55] 2025-12-15 17:25:23,148 | INFO     | 
[2025-12-15 18:25:55] 2025-12-15 17:25:23,148 | INFO     | job summary report
[2025-12-15 18:25:55] 2025-12-15 17:25:23,148 | INFO     | --------------------------------------------------
[2025-12-15 18:25:55] 2025-12-15 17:25:23,148 | INFO     | PanDA job id: 6929465679
[2025-12-15 18:25:55] 2025-12-15 17:25:23,148 | INFO     | task id: 47898763
[2025-12-15 18:25:55] 2025-12-15 17:25:23,148 | INFO     | errors: (none)
[2025-12-15 18:25:55] 2025-12-15 17:25:23,149 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 18:25:55] 2025-12-15 17:25:23,149 | INFO     | pilot state: finished 
[2025-12-15 18:25:55] 2025-12-15 17:25:23,149 | INFO     | transexitcode: 0
[2025-12-15 18:25:55] 2025-12-15 17:25:23,149 | INFO     | exeerrorcode: 0
[2025-12-15 18:25:55] 2025-12-15 17:25:23,149 | INFO     | exeerrordiag: 
[2025-12-15 18:25:55] 2025-12-15 17:25:23,149 | INFO     | exitcode: 0
[2025-12-15 18:25:55] 2025-12-15 17:25:23,149 | INFO     | exitmsg: OK
[2025-12-15 18:25:55] 2025-12-15 17:25:23,150 | INFO     | cpuconsumptiontime: 20085 s
[2025-12-15 18:25:55] 2025-12-15 17:25:23,150 | INFO     | nevents: 400
[2025-12-15 18:25:55] 2025-12-15 17:25:23,150 | INFO     | neventsw: 0
[2025-12-15 18:25:55] 2025-12-15 17:25:23,150 | INFO     | pid: 3799753
[2025-12-15 18:25:55] 2025-12-15 17:25:23,150 | INFO     | pgrp: 3799753
[2025-12-15 18:25:55] 2025-12-15 17:25:23,150 | INFO     | corecount: 2
[2025-12-15 18:25:55] 2025-12-15 17:25:23,150 | INFO     | event service: False
[2025-12-15 18:25:55] 2025-12-15 17:25:23,151 | INFO     | sizes: {0: 2283959, 6: 2284221, 10: 2284249, 10239: 2313278, 10240: 2322337, 10243: 2322337, 10249: 2322723}
[2025-12-15 18:25:55] 2025-12-15 17:25:23,151 | INFO     | --------------------------------------------------
[2025-12-15 18:25:55] 2025-12-15 17:25:23,151 | INFO     | 
[2025-12-15 18:25:55] 2025-12-15 17:25:23,151 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-15 18:25:55] 2025-12-15 17:25:23,162 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,162 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | job 6929465679 has completed (purged errors)
[2025-12-15 18:25:55] 2025-12-15 17:25:23,163 | INFO     | overall cleanup function is called
[2025-12-15 18:25:55] 2025-12-15 17:25:24,169 | INFO     | --- collectZombieJob: --- 10, [3799753]
[2025-12-15 18:25:55] 2025-12-15 17:25:24,170 | INFO     | zombie collector waiting for pid 3799753
[2025-12-15 18:25:55] 2025-12-15 17:25:24,170 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 18:25:55] 2025-12-15 17:25:24,170 | INFO     | collected zombie processes
[2025-12-15 18:25:55] 2025-12-15 17:25:24,170 | INFO     | will attempt to kill all subprocesses of pid=3799753
[2025-12-15 18:25:55] 2025-12-15 17:25:24,208 | INFO     | process IDs to be killed: [3799753] (in reverse order)
[2025-12-15 18:25:55] 2025-12-15 17:25:24,230 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 18:25:55] 2025-12-15 17:25:24,230 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 18:25:55] 2025-12-15 17:25:24,231 | INFO     | did not find any defunct processes belonging to 3799753
[2025-12-15 18:25:55] 2025-12-15 17:25:24,232 | INFO     | did not find any defunct processes belonging to 3799753
[2025-12-15 18:25:55] 2025-12-15 17:25:24,232 | INFO     | ready for new job
[2025-12-15 18:25:55] 2025-12-15 17:25:24,232 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 18:25:55] 2025-12-15 17:25:24,232 | INFO     | ***************************************
[2025-12-15 18:25:55] 2025-12-15 17:25:24,232 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 18:25:55] 2025-12-15 17:25:24,233 | INFO     | ***************************************
[2025-12-15 18:25:55] 2025-12-15 17:25:24,233 | INFO     | 
[2025-12-15 18:25:55] 2025-12-15 17:25:24,233 | INFO     | architecture information:
[2025-12-15 18:25:55] 2025-12-15 17:25:24,233 | INFO     | executing command: cat /etc/os-release
[2025-12-15 18:25:55] 2025-12-15 17:25:24,241 | INFO     | cat /etc/os-release:
[2025-12-15 18:25:55] NAME="CentOS Linux"
[2025-12-15 18:25:55] VERSION="7 (Core)"
[2025-12-15 18:25:55] ID="centos"
[2025-12-15 18:25:55] ID_LIKE="rhel fedora"
[2025-12-15 18:25:55] VERSION_ID="7"
[2025-12-15 18:25:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 18:25:55] ANSI_COLOR="0;31"
[2025-12-15 18:25:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 18:25:55] HOME_URL="https://www.centos.org/"
[2025-12-15 18:25:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 18:25:55] 
[2025-12-15 18:25:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 18:25:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 18:25:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 18:25:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 18:25:55] 
[2025-12-15 18:25:55] 2025-12-15 17:25:24,241 | INFO     | ***************************************
[2025-12-15 18:25:55] 2025-12-15 17:25:24,744 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 18:25:55] 2025-12-15 17:25:24,773 | INFO     | sufficient remaining disk space (174252359680 B)
[2025-12-15 18:25:55] 2025-12-15 17:25:24,774 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 18:25:55] 2025-12-15 17:25:24,774 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 18:25:55] 2025-12-15 17:25:24,774 | INFO     | update_server=False
[2025-12-15 18:25:55] 2025-12-15 17:25:24,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 18:25:55] 2025-12-15 17:25:24,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 18:25:55] 2025-12-15 17:25:24,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 18:25:55] 2025-12-15 17:25:25,201 | INFO     | all data control threads have been joined
[2025-12-15 18:25:55] 2025-12-15 17:25:25,234 | INFO     | all job control threads have been joined
[2025-12-15 18:25:55] 2025-12-15 17:25:25,245 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-15 18:25:55] 2025-12-15 17:25:25,246 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-15 18:25:55] 2025-12-15 17:25:25,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 18:25:55] 2025-12-15 17:25:25,246 | INFO     | will abort loop
[2025-12-15 18:25:55] 2025-12-15 17:25:25,435 | INFO     | all payload control threads have been joined
[2025-12-15 18:25:55] 2025-12-15 17:25:25,781 | INFO     | [job] retrieve thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:25,781 | INFO     | [job] queue monitor thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:25,803 | INFO     | [job] validate thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:25,920 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:26,017 | INFO     | [data] copytool_in thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:26,018 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:26,207 | INFO     | [data] control thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:26,240 | INFO     | [job] control thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:26,252 | INFO     | [job] job monitor thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:26,441 | INFO     | [payload] control thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:26,598 | INFO     | [payload] failed_post thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:26,704 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:26,777 | INFO     | [data] copytool_out thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:26,809 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 18:25:55] 2025-12-15 17:25:27,213 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:27,269 | INFO     | [payload] validate_post thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:30,515 | INFO     | [monitor] cgroup control has ended
[2025-12-15 18:25:55] 2025-12-15 17:25:30,816 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 18:25:55] 2025-12-15 17:25:31,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140065573275456)>', '<ExcThread(monitor, started 140064856209152)>']
[2025-12-15 18:25:55] 2025-12-15 17:25:36,546 | INFO     | all workflow threads have been joined
[2025-12-15 18:25:55] 2025-12-15 17:25:36,547 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 18:25:55] 2025-12-15 17:25:36,547 | INFO     | traces error code: 0
[2025-12-15 18:25:55] 2025-12-15 17:25:36,548 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 18:25:55] 2025-12-15 17:25:55,016 | INFO     | PID=3793315 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 18:25:55] 2025-12-15 17:25:55,016 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 18:25:55] 2025-12-15 17:25:55,016 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 18:25:55] 2025-12-15 17:25:55,016 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 18:25:55] 2025-12-15 17:25:55,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 18:25:55] 2025-12-15 17:25:55,016 | INFO     | [monitor] control thread has ended
[2025-12-15 18:25:55] 2025-12-15 17:25:55,055 [wrapper] ==== pilot stdout END ====
[2025-12-15 18:25:55] 2025-12-15 17:25:55,058 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 18:25:55] 2025-12-15 17:25:55,060 [wrapper] pilotpid: 3793315
[2025-12-15 18:25:55] 2025-12-15 17:25:55,062 [wrapper] Pilot exit status: 0
[2025-12-15 18:25:55] 2025-12-15 17:25:55,067 [wrapper] pandaids: 6929465679
[2025-12-15 18:25:55] 2025-12-15 17:25:55,079 [wrapper] cleanup supervisor_pilot 3822232 3793316
[2025-12-15 18:25:55] 2025-12-15 17:25:55,081 [wrapper] Test setup, not cleaning
[2025-12-15 18:25:55] 2025-12-15 17:25:55,083 [wrapper] apfmon messages muted
[2025-12-15 18:25:55] 2025-12-15 17:25:55,085 [wrapper] ==== wrapper stdout END ====
[2025-12-15 18:25:55] 2025-12-15 17:25:55,087 [wrapper] ==== wrapper stderr END ====
[2025-12-15 18:25:55]  *** Error codes and diagnostics ***
[2025-12-15 18:25:55]     "exeErrorCode": 0,
[2025-12-15 18:25:55]     "exeErrorDiag": "",
[2025-12-15 18:25:55]     "pilotErrorCode": 0,
[2025-12-15 18:25:55]     "pilotErrorDiag": "",
[2025-12-15 18:25:55]  *** Listing of results directory ***
[2025-12-15 18:25:55] total 439764
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc    579449 Dec 14 19:53 pilot3.tar.gz
[2025-12-15 18:25:55] -rwx------ 1 boinc boinc     36322 Dec 14 19:55 runpilot2-wrapper.sh
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc      5112 Dec 14 19:56 queuedata.json
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc       100 Dec 15 15:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 18:25:55] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 15:34 run_atlas
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc       105 Dec 15 15:34 job.xml
[2025-12-15 18:25:55] -rw-r--r-- 2 boinc boinc 223351115 Dec 15 15:34 EVNT.47898761._000523.pool.root.1
[2025-12-15 18:25:55] -rw-r--r-- 2 boinc boinc    592399 Dec 15 15:34 input.tar.gz
[2025-12-15 18:25:55] -rw-r--r-- 2 boinc boinc     15847 Dec 15 15:34 start_atlas.sh
[2025-12-15 18:25:55] drwxrwx--x 2 boinc boinc      4096 Dec 15 15:34 shared
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc         0 Dec 15 15:34 boinc_setup_complete
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc      6208 Dec 15 15:34 init_data.xml
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc         0 Dec 15 15:34 boinc_lockfile
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc      2506 Dec 15 15:34 pandaJob.out
[2025-12-15 18:25:55] -rw------- 1 boinc boinc    994497 Dec 15 15:34 agis_schedconf.cvmfs.json
[2025-12-15 18:25:55] -rw------- 1 boinc boinc   1516240 Dec 15 15:34 agis_ddmendpoints.agis.ALL.json
[2025-12-15 18:25:55] drwx------ 5 boinc boinc      4096 Dec 15 15:34 pilot3
[2025-12-15 18:25:55] -rw------- 1 boinc boinc 219506091 Dec 15 18:24 HITS.47898763._011812.pool.root.1
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc       530 Dec 15 18:24 boinc_task_state.xml
[2025-12-15 18:25:55] -rw------- 1 boinc boinc        95 Dec 15 18:25 pilot_heartbeat.json
[2025-12-15 18:25:55] -rw------- 1 boinc boinc      1017 Dec 15 18:25 memory_monitor_summary.json
[2025-12-15 18:25:55] -rw------- 1 boinc boinc    314289 Dec 15 18:25 log.47898763._011812.job.log.tgz.1
[2025-12-15 18:25:55] -rw------- 1 boinc boinc      7763 Dec 15 18:25 heartbeat.json
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc      8192 Dec 15 18:25 boinc_mmap_file
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc        28 Dec 15 18:25 wrapper_checkpoint.txt
[2025-12-15 18:25:55] -rw------- 1 boinc boinc       747 Dec 15 18:25 pilotlog.txt
[2025-12-15 18:25:55] -rw------- 1 boinc boinc   1460889 Dec 15 18:25 log.47898763._011812.job.log.1
[2025-12-15 18:25:55] -rw------- 1 boinc boinc       357 Dec 15 18:25 output.list
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc       620 Dec 15 18:25 runtime_log
[2025-12-15 18:25:55] -rw------- 1 boinc boinc   1792000 Dec 15 18:25 result.tar.gz
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc      8918 Dec 15 18:25 runtime_log.err
[2025-12-15 18:25:55] -rw------- 1 boinc boinc       666 Dec 15 18:25 OJuMDm8Q6o8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMqRKDmeuZfnn.diag
[2025-12-15 18:25:55] -rw-r--r-- 1 boinc boinc     21328 Dec 15 18:25 stderr.txt
[2025-12-15 18:25:55] HITS file was successfully produced:
[2025-12-15 18:25:55] -rw------- 1 boinc boinc 219506091 Dec 15 18:24 shared/HITS.pool.root.1
[2025-12-15 18:25:55]  *** Contents of shared directory: ***
[2025-12-15 18:25:55] total 434836
[2025-12-15 18:25:55] -rw-r--r-- 2 boinc boinc 223351115 Dec 15 15:34 ATLAS.root_0
[2025-12-15 18:25:55] -rw-r--r-- 2 boinc boinc    592399 Dec 15 15:34 input.tar.gz
[2025-12-15 18:25:55] -rw-r--r-- 2 boinc boinc     15847 Dec 15 15:34 start_atlas.sh
[2025-12-15 18:25:55] -rw------- 1 boinc boinc 219506091 Dec 15 18:24 HITS.pool.root.1
[2025-12-15 18:25:55] -rw------- 1 boinc boinc   1792000 Dec 15 18:25 result.tar.gz
18:25:57 (3789600): run_atlas exited; CPU time 20138.096130
18:25:57 (3789600): called boinc_finish(0)

</stderr_txt>
]]>

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