Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:30:19 (3079264): wrapper (7.7.26015): starting
11:30:19 (3079264): wrapper: running run_atlas (--nthreads 3)
[2025-12-15 11:30:19] Arguments: --nthreads 3
[2025-12-15 11:30:19] Threads: 3
[2025-12-15 11:30:19] Checking for CVMFS
[2025-12-15 11:30:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 11:30:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 11:30:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 11:30:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 11:30:19] 2.9.2.0 2238870 3233 84324 154029 3 57 20844479 36864000 0 130560 0 2221770 99.990 113255 16473 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 11:30:19] CVMFS is ok
[2025-12-15 11:30:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 11:30:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 11:30:19] Further information can be found at the LHC@home message board.
[2025-12-15 11:30:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 11:30:19] Checking for apptainer binary...
[2025-12-15 11:30:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 11:30:19] Running /usr/bin/apptainer --version
[2025-12-15 11:30:19] apptainer version 1.4.1-1.1
[2025-12-15 11:30:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 11:30:19] magicA161a
[2025-12-15 11:30:19] apptainer works
[2025-12-15 11:30:19] Set ATHENA_PROC_NUMBER=3
[2025-12-15 11:30:19] Set ATHENA_CORE_NUMBER=3
[2025-12-15 11:30:19] Starting ATLAS job with PandaID=6929522869
[2025-12-15 11:30:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 13:22:36]  *** The last 200 lines of the pilot log: ***
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,137 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 13:22:36] 2025-12-15 12:21:40,138 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,138 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 13:22:36] 2025-12-15 12:21:40,138 | INFO     | job 6929522869 has completed (purged errors)
[2025-12-15 13:22:36] 2025-12-15 12:21:40,138 | INFO     | overall cleanup function is called
[2025-12-15 13:22:36] 2025-12-15 12:21:40,748 | INFO     | PID=3082987 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 13:22:36] 2025-12-15 12:21:41,144 | INFO     | --- collectZombieJob: --- 10, [3089437]
[2025-12-15 13:22:36] 2025-12-15 12:21:41,144 | INFO     | zombie collector waiting for pid 3089437
[2025-12-15 13:22:36] 2025-12-15 12:21:41,144 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 13:22:36] 2025-12-15 12:21:41,145 | INFO     | collected zombie processes
[2025-12-15 13:22:36] 2025-12-15 12:21:41,145 | INFO     | will attempt to kill all subprocesses of pid=3089437
[2025-12-15 13:22:36] 2025-12-15 12:21:41,185 | INFO     | process IDs to be killed: [3089437] (in reverse order)
[2025-12-15 13:22:36] 2025-12-15 12:21:41,209 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 13:22:36] 2025-12-15 12:21:41,209 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 13:22:36] 2025-12-15 12:21:41,210 | INFO     | did not find any defunct processes belonging to 3089437
[2025-12-15 13:22:36] 2025-12-15 12:21:41,211 | INFO     | did not find any defunct processes belonging to 3089437
[2025-12-15 13:22:36] 2025-12-15 12:21:41,211 | INFO     | ready for new job
[2025-12-15 13:22:36] 2025-12-15 12:21:41,211 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 13:22:36] 2025-12-15 12:21:41,212 | INFO     | ***************************************
[2025-12-15 13:22:36] 2025-12-15 12:21:41,212 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 13:22:36] 2025-12-15 12:21:41,212 | INFO     | ***************************************
[2025-12-15 13:22:36] 2025-12-15 12:21:41,212 | INFO     | 
[2025-12-15 13:22:36] 2025-12-15 12:21:41,212 | INFO     | architecture information:
[2025-12-15 13:22:36] 2025-12-15 12:21:41,212 | INFO     | executing command: cat /etc/os-release
[2025-12-15 13:22:36] 2025-12-15 12:21:41,220 | INFO     | cat /etc/os-release:
[2025-12-15 13:22:36] NAME="CentOS Linux"
[2025-12-15 13:22:36] VERSION="7 (Core)"
[2025-12-15 13:22:36] ID="centos"
[2025-12-15 13:22:36] ID_LIKE="rhel fedora"
[2025-12-15 13:22:36] VERSION_ID="7"
[2025-12-15 13:22:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 13:22:36] ANSI_COLOR="0;31"
[2025-12-15 13:22:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 13:22:36] HOME_URL="https://www.centos.org/"
[2025-12-15 13:22:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 13:22:36] 
[2025-12-15 13:22:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 13:22:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 13:22:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 13:22:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 13:22:36] 
[2025-12-15 13:22:36] 2025-12-15 12:21:41,220 | INFO     | ***************************************
[2025-12-15 13:22:36] 2025-12-15 12:21:41,722 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 13:22:36] 2025-12-15 12:21:41,734 | INFO     | sufficient remaining disk space (384327221248 B)
[2025-12-15 13:22:36] 2025-12-15 12:21:41,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 13:22:36] 2025-12-15 12:21:41,735 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 13:22:36] 2025-12-15 12:21:41,735 | INFO     | update_server=False
[2025-12-15 13:22:36] 2025-12-15 12:21:41,735 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 13:22:36] 2025-12-15 12:21:41,735 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-15 13:22:36] 2025-12-15 12:21:41,735 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 13:22:36] 2025-12-15 12:21:41,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 13:22:36] 2025-12-15 12:21:41,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 13:22:36] 2025-12-15 12:21:41,735 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 13:22:36] 2025-12-15 12:21:41,735 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 13:22:36] 2025-12-15 12:21:41,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 13:22:36] 2025-12-15 12:21:41,736 | INFO     | aborting loop
[2025-12-15 13:22:36] 2025-12-15 12:21:41,822 | INFO     | all payload control threads have been joined
[2025-12-15 13:22:36] 2025-12-15 12:21:41,896 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 13:22:36] 2025-12-15 12:21:42,421 | INFO     | all data control threads have been joined
[2025-12-15 13:22:36] 2025-12-15 12:21:42,728 | INFO     | all job control threads have been joined
[2025-12-15 13:22:36] 2025-12-15 12:21:42,739 | INFO     | [job] retrieve thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:42,741 | INFO     | [job] queue monitor thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:42,741 | INFO     | [job] job monitor thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:42,828 | INFO     | [payload] control thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:43,122 | INFO     | [data] copytool_in thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:43,194 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:43,426 | INFO     | [data] control thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:43,637 | INFO     | [job] validate thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:43,714 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:43,734 | INFO     | [job] control thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:43,741 | INFO     | [data] copytool_out thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:43,811 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:43,829 | INFO     | [payload] validate_post thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:44,048 | INFO     | [payload] failed_post thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:45,902 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:21:52,496 | INFO     | job.realtimelogging is not enabled
[2025-12-15 13:22:36] 2025-12-15 12:21:53,501 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 13:22:36] 2025-12-15 12:22:31,781 | INFO     | [monitor] cgroup control has ended
[2025-12-15 13:22:36] 2025-12-15 12:22:31,844 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140557753075520)>', '<ExcThread(monitor, started 140557384914688)>']
[2025-12-15 13:22:36] 2025-12-15 12:22:31,993 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 13:22:36] 2025-12-15 12:22:31,993 | INFO     | [monitor] control thread has ended
[2025-12-15 13:22:36] 2025-12-15 12:22:36,869 | INFO     | all workflow threads have been joined
[2025-12-15 13:22:36] 2025-12-15 12:22:36,870 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 13:22:36] 2025-12-15 12:22:36,871 | INFO     | traces error code: 0
[2025-12-15 13:22:36] 2025-12-15 12:22:36,871 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 13:22:36] 2025-12-15 12:22:36,920 [wrapper] ==== pilot stdout END ====
[2025-12-15 13:22:36] 2025-12-15 12:22:36,922 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 13:22:36] 2025-12-15 12:22:36,925 [wrapper] pilotpid: 3082987
[2025-12-15 13:22:36] 2025-12-15 12:22:36,927 [wrapper] Pilot exit status: 0
[2025-12-15 13:22:36] 2025-12-15 12:22:36,934 [wrapper] pandaids: 6929522869
[2025-12-15 13:22:36] 2025-12-15 12:22:36,950 [wrapper] cleanup supervisor_pilot 3103818 3082988
[2025-12-15 13:22:36] 2025-12-15 12:22:36,953 [wrapper] Test setup, not cleaning
[2025-12-15 13:22:36] 2025-12-15 12:22:36,955 [wrapper] apfmon messages muted
[2025-12-15 13:22:36] 2025-12-15 12:22:36,958 [wrapper] ==== wrapper stdout END ====
[2025-12-15 13:22:36] 2025-12-15 12:22:36,960 [wrapper] ==== wrapper stderr END ====
[2025-12-15 13:22:36]  *** Error codes and diagnostics ***
[2025-12-15 13:22:36]     "exeErrorCode": 0,
[2025-12-15 13:22:36]     "exeErrorDiag": "",
[2025-12-15 13:22:36]     "pilotErrorCode": 0,
[2025-12-15 13:22:36]     "pilotErrorDiag": "",
[2025-12-15 13:22:36]  *** Listing of results directory ***
[2025-12-15 13:22:37] total 440560
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc      5112 Dec 15 00:13 queuedata.json
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc    579449 Dec 15 00:13 pilot3.tar.gz
[2025-12-15 13:22:37] -rwx------ 1 boinc boinc     36322 Dec 15 00:15 runpilot2-wrapper.sh
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc       100 Dec 15 11:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 13:22:37] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 11:30 run_atlas
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc       105 Dec 15 11:30 job.xml
[2025-12-15 13:22:37] -rw-r--r-- 2 boinc boinc 225148679 Dec 15 11:30 EVNT.47898824._000045.pool.root.1
[2025-12-15 13:22:37] -rw-r--r-- 2 boinc boinc    592386 Dec 15 11:30 input.tar.gz
[2025-12-15 13:22:37] -rw-r--r-- 2 boinc boinc     15847 Dec 15 11:30 start_atlas.sh
[2025-12-15 13:22:37] drwxrwx--x 2 boinc boinc      4096 Dec 15 11:30 shared
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc         0 Dec 15 11:30 boinc_setup_complete
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc      6448 Dec 15 11:30 init_data.xml
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc         0 Dec 15 11:30 boinc_lockfile
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc      2511 Dec 15 11:30 pandaJob.out
[2025-12-15 13:22:37] -rw------- 1 boinc boinc    990996 Dec 15 11:30 agis_schedconf.cvmfs.json
[2025-12-15 13:22:37] -rw------- 1 boinc boinc   1516240 Dec 15 11:30 agis_ddmendpoints.agis.ALL.json
[2025-12-15 13:22:37] drwx------ 5 boinc boinc      4096 Dec 15 11:30 pilot3
[2025-12-15 13:22:37] -rw------- 1 boinc boinc        95 Dec 15 13:20 pilot_heartbeat.json
[2025-12-15 13:22:37] -rw------- 1 boinc boinc 219581249 Dec 15 13:21 HITS.47898826._000917.pool.root.1
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc       529 Dec 15 13:21 boinc_task_state.xml
[2025-12-15 13:22:37] -rw------- 1 boinc boinc      1014 Dec 15 13:21 memory_monitor_summary.json
[2025-12-15 13:22:37] -rw------- 1 boinc boinc    284564 Dec 15 13:21 log.47898826._000917.job.log.tgz.1
[2025-12-15 13:22:37] -rw------- 1 boinc boinc      7760 Dec 15 13:21 heartbeat.json
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc        27 Dec 15 13:22 wrapper_checkpoint.txt
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc      8192 Dec 15 13:22 boinc_mmap_file
[2025-12-15 13:22:37] -rw------- 1 boinc boinc      4628 Dec 15 13:22 pilotlog.txt
[2025-12-15 13:22:37] -rw------- 1 boinc boinc    965054 Dec 15 13:22 log.47898826._000917.job.log.1
[2025-12-15 13:22:37] -rw------- 1 boinc boinc       357 Dec 15 13:22 output.list
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc       620 Dec 15 13:22 runtime_log
[2025-12-15 13:22:37] -rw------- 1 boinc boinc   1269760 Dec 15 13:22 result.tar.gz
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc      8917 Dec 15 13:22 runtime_log.err
[2025-12-15 13:22:37] -rw------- 1 boinc boinc       663 Dec 15 13:22 2hVKDmJUAp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOGSKDmcX4WIn.diag
[2025-12-15 13:22:37] -rw-r--r-- 1 boinc boinc     12792 Dec 15 13:22 stderr.txt
[2025-12-15 13:22:37] HITS file was successfully produced:
[2025-12-15 13:22:37] -rw------- 1 boinc boinc 219581249 Dec 15 13:21 shared/HITS.pool.root.1
[2025-12-15 13:22:37]  *** Contents of shared directory: ***
[2025-12-15 13:22:37] total 436152
[2025-12-15 13:22:37] -rw-r--r-- 2 boinc boinc 225148679 Dec 15 11:30 ATLAS.root_0
[2025-12-15 13:22:37] -rw-r--r-- 2 boinc boinc    592386 Dec 15 11:30 input.tar.gz
[2025-12-15 13:22:37] -rw-r--r-- 2 boinc boinc     15847 Dec 15 11:30 start_atlas.sh
[2025-12-15 13:22:37] -rw------- 1 boinc boinc 219581249 Dec 15 13:21 HITS.pool.root.1
[2025-12-15 13:22:37] -rw------- 1 boinc boinc   1269760 Dec 15 13:22 result.tar.gz
13:22:38 (3079264): run_atlas exited; CPU time 19349.637444
13:22:38 (3079264): called boinc_finish(0)

</stderr_txt>
]]>

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