Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:05:29 (16593): wrapper (7.7.26015): starting
22:05:29 (16593): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 22:05:29] Arguments: --nthreads 12
[2025-12-14 22:05:29] Threads: 12
[2025-12-14 22:05:29] Checking for CVMFS
[2025-12-14 22:05:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 22:05:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 22:05:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 22:05:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 22:05:30] 2.11.2.0 2937 314479 95224 154016 2 16 13854776 20275200 1 130560 1 139080176 99.966 18874688 15816 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 22:05:30] CVMFS is ok
[2025-12-14 22:05:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 22:05:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 22:05:30] Further information can be found at the LHC@home message board.
[2025-12-14 22:05:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 22:05:30] Checking for apptainer binary...
[2025-12-14 22:05:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 22:05:30] Running /usr/bin/apptainer --version
[2025-12-14 22:05:30] apptainer version 1.3.2-1.el7
[2025-12-14 22:05:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 22:05:31] c-205-8.aglt2.org
[2025-12-14 22:05:31] apptainer works
[2025-12-14 22:05:31] Set ATHENA_PROC_NUMBER=12
[2025-12-14 22:05:31] Set ATHENA_CORE_NUMBER=12
[2025-12-14 22:05:31] Starting ATLAS job with PandaID=6929508234
[2025-12-14 22:05:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 23:31:00]  *** The last 200 lines of the pilot log: ***
[2025-12-14 23:31:00]  protocol_id=None
[2025-12-14 23:31:00]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 23:31:00]  replicas=None
[2025-12-14 23:31:00]  scope=mc23_13p6TeV
[2025-12-14 23:31:00]  status=None
[2025-12-14 23:31:00]  status_code=0
[2025-12-14 23:31:00]  storage_token=
[2025-12-14 23:31:00]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929508234/log.47886933._004513.job.log.tgz.1
[2025-12-14 23:31:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/df/f5/log.47886933._004513.job.log.tgz.1
[2025-12-14 23:31:00]  workdir=None
[2025-12-14 23:31:00] ]
[2025-12-14 23:31:00] 2025-12-15 04:30:05,837 | INFO     | transferring file log.47886933._004513.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929508234/log.47886933._004513.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 23:31:00] 2025-12-15 04:30:05,837 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929508234/log.47886933._004513.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._004513.job
[2025-12-14 23:31:00] 2025-12-15 04:30:05,859 | INFO     | adding to output.list: log.47886933._004513.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/df/f5/log.47886933._004513.job.log.tg
[2025-12-14 23:31:00] 2025-12-15 04:30:05,860 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 23:31:00] 2025-12-15 04:30:05,860 | INFO     | summary of transferred files:
[2025-12-14 23:31:00] 2025-12-15 04:30:05,860 | INFO     |  -- lfn=log.47886933._004513.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 23:31:00] 2025-12-15 04:30:05,860 | INFO     | stage-out finished correctly
[2025-12-14 23:31:00] 2025-12-15 04:30:06,129 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 23:31:00] 2025-12-15 04:30:06,553 | INFO     | time since job start (5059s) is within the limit (174528.0s)
[2025-12-14 23:31:00] 2025-12-15 04:30:07,467 | INFO     | monitor loop #377: job 0:6929508234 is in state 'finished'
[2025-12-14 23:31:00] 2025-12-15 04:30:07,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 23:31:00] 2025-12-15 04:30:08,051 | INFO     | job 6929508234 has state=finished
[2025-12-14 23:31:00] 2025-12-15 04:30:08,051 | INFO     | preparing for final server update for job 6929508234 in state='finished'
[2025-12-14 23:31:00] 2025-12-15 04:30:08,052 | INFO     | this job has now completed (state=finished)
[2025-12-14 23:31:00] 2025-12-15 04:30:08,052 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 23:31:00] 2025-12-15 04:30:08,052 | INFO     | log transfer has been attempted: DONE
[2025-12-14 23:31:00] 2025-12-15 04:30:08,052 | INFO     | job 6929508234 has finished - writing final server update
[2025-12-14 23:31:00] 2025-12-15 04:30:08,053 | INFO     | total number of processed events: 400 (read)
[2025-12-14 23:31:00] 2025-12-15 04:30:08,054 | INFO     | executing command: lscpu
[2025-12-14 23:31:00] 2025-12-15 04:30:08,078 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 23:31:00] 2025-12-15 04:30:08,558 | INFO     | time since job start (5061s) is within the limit (174528.0s)
[2025-12-14 23:31:00] 2025-12-15 04:30:09,970 | INFO     | monitor loop #378: job 0:6929508234 is in state 'finished'
[2025-12-14 23:31:00] 2025-12-15 04:30:09,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 23:31:00] 2025-12-15 04:30:10,564 | INFO     | time since job start (5063s) is within the limit (174528.0s)
[2025-12-14 23:31:00] 2025-12-15 04:30:11,676 | INFO     | PID=20309 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 23:31:00] 2025-12-15 04:30:12,473 | INFO     | monitor loop #379: job 0:6929508234 is in state 'finished'
[2025-12-14 23:31:00] 2025-12-15 04:30:12,473 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 23:31:00] 2025-12-15 04:30:12,676 | INFO     | time since job start (5065s) is within the limit (174528.0s)
[2025-12-14 23:31:00] 2025-12-15 04:30:13,571 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 23:31:00] 2025-12-15 04:30:13,575 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.5
[2025-12-14 23:31:00] 2025-12-15 04:30:13,577 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929508234/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 23:31:00] 2025-12-15 04:30:13,578 | INFO     | extracted standard info from prmon json
[2025-12-14 23:31:00] 2025-12-15 04:30:13,578 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 23:31:00] 2025-12-15 04:30:13,578 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 23:31:00] 2025-12-15 04:30:13,579 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 23:31:00] 2025-12-15 04:30:13,579 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 23:31:00] 2025-12-15 04:30:13,580 | INFO     | fitting pss+swap vs Time
[2025-12-14 23:31:00] 2025-12-15 04:30:13,581 | INFO     | sum of square deviations: 136095575.0
[2025-12-14 23:31:00] 2025-12-15 04:30:13,581 | INFO     | sum of deviations: 3166495390.500001
[2025-12-14 23:31:00] 2025-12-15 04:30:13,581 | INFO     | mean x: 1765770568.5
[2025-12-14 23:31:00] 2025-12-15 04:30:13,581 | INFO     | mean y: 2640721.7236842103
[2025-12-14 23:31:00] 2025-12-15 04:30:13,581 | INFO     | intersect: -41081019535.678635
[2025-12-14 23:31:00] 2025-12-15 04:30:13,582 | INFO     | chi2: 0.028487021215249334
[2025-12-14 23:31:00] 2025-12-15 04:30:13,582 | INFO     | current memory leak: 23.27 B/s (using 76 data points, chi2=0.03)
[2025-12-14 23:31:00] 2025-12-15 04:30:13,582 | INFO     | could have reported an average CPU frequency of 2054 MHz (6 samples)
[2025-12-14 23:31:00] 2025-12-15 04:30:13,582 | INFO     | ..............................
[2025-12-14 23:31:00] 2025-12-15 04:30:13,582 | INFO     | . Timing measurements:
[2025-12-14 23:31:00] 2025-12-15 04:30:13,582 | INFO     | . get job = 0 s
[2025-12-14 23:31:00] 2025-12-15 04:30:13,583 | INFO     | . initial setup = 2 s
[2025-12-14 23:31:00] 2025-12-15 04:30:13,583 | INFO     | . payload setup = 7 s
[2025-12-14 23:31:00] 2025-12-15 04:30:13,583 | INFO     | . stage-in = 0 s
[2025-12-14 23:31:00] 2025-12-15 04:30:13,583 | INFO     | . payload execution = 5033 s
[2025-12-14 23:31:00] 2025-12-15 04:30:13,583 | INFO     | . stage-out = 0 s
[2025-12-14 23:31:00] 2025-12-15 04:30:13,583 | INFO     | . log creation = 0 s
[2025-12-14 23:31:00] 2025-12-15 04:30:13,583 | INFO     | ..............................
[2025-12-14 23:31:00] 2025-12-15 04:30:13,663 | INFO     | 
[2025-12-14 23:31:00] 2025-12-15 04:30:13,663 | INFO     | job summary report
[2025-12-14 23:31:00] 2025-12-15 04:30:13,663 | INFO     | --------------------------------------------------
[2025-12-14 23:31:00] 2025-12-15 04:30:13,663 | INFO     | PanDA job id: 6929508234
[2025-12-14 23:31:00] 2025-12-15 04:30:13,663 | INFO     | task id: 47886933
[2025-12-14 23:31:00] 2025-12-15 04:30:13,663 | INFO     | errors: (none)
[2025-12-14 23:31:00] 2025-12-15 04:30:13,663 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 23:31:00] 2025-12-15 04:30:13,663 | INFO     | pilot state: finished 
[2025-12-14 23:31:00] 2025-12-15 04:30:13,663 | INFO     | transexitcode: 0
[2025-12-14 23:31:00] 2025-12-15 04:30:13,664 | INFO     | exeerrorcode: 0
[2025-12-14 23:31:00] 2025-12-15 04:30:13,664 | INFO     | exeerrordiag: 
[2025-12-14 23:31:00] 2025-12-15 04:30:13,664 | INFO     | exitcode: 0
[2025-12-14 23:31:00] 2025-12-15 04:30:13,664 | INFO     | exitmsg: OK
[2025-12-14 23:31:00] 2025-12-15 04:30:13,664 | INFO     | cpuconsumptiontime: 50536 s
[2025-12-14 23:31:00] 2025-12-15 04:30:13,664 | INFO     | nevents: 400
[2025-12-14 23:31:00] 2025-12-15 04:30:13,664 | INFO     | neventsw: 0
[2025-12-14 23:31:00] 2025-12-15 04:30:13,664 | INFO     | pid: 26780
[2025-12-14 23:31:00] 2025-12-15 04:30:13,664 | INFO     | pgrp: 26780
[2025-12-14 23:31:00] 2025-12-15 04:30:13,664 | INFO     | corecount: 12
[2025-12-14 23:31:00] 2025-12-15 04:30:13,664 | INFO     | event service: False
[2025-12-14 23:31:00] 2025-12-15 04:30:13,665 | INFO     | sizes: {0: 2283738, 1: 2283993, 6: 2284255, 12: 2284283, 5041: 2310550, 5042: 2310549, 5043: 2319787, 5051: 2319925}
[2025-12-14 23:31:00] 2025-12-15 04:30:13,665 | INFO     | --------------------------------------------------
[2025-12-14 23:31:00] 2025-12-15 04:30:13,665 | INFO     | 
[2025-12-14 23:31:00] 2025-12-15 04:30:13,665 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 23:31:00] 2025-12-15 04:30:13,688 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,688 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,688 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,688 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,688 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,688 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,689 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,689 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,689 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,689 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,689 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,689 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,689 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,689 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,689 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,690 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,690 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,690 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 23:31:00] 2025-12-15 04:30:13,690 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,690 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 23:31:00] 2025-12-15 04:30:13,690 | INFO     | job 6929508234 has completed (purged errors)
[2025-12-14 23:31:00] 2025-12-15 04:30:13,690 | INFO     | overall cleanup function is called
[2025-12-14 23:31:00] 2025-12-15 04:30:14,697 | INFO     | --- collectZombieJob: --- 10, [26780]
[2025-12-14 23:31:00] 2025-12-15 04:30:14,698 | INFO     | zombie collector waiting for pid 26780
[2025-12-14 23:31:00] 2025-12-15 04:30:14,698 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 23:31:00] 2025-12-15 04:30:14,698 | INFO     | collected zombie processes
[2025-12-14 23:31:00] 2025-12-15 04:30:14,698 | INFO     | will attempt to kill all subprocesses of pid=26780
[2025-12-14 23:31:00] 2025-12-15 04:30:14,782 | INFO     | process IDs to be killed: [26780] (in reverse order)
[2025-12-14 23:31:00] 2025-12-15 04:30:14,833 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 23:31:00] 2025-12-15 04:30:14,833 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 23:31:00] 2025-12-15 04:30:14,835 | INFO     | did not find any defunct processes belonging to 26780
[2025-12-14 23:31:00] 2025-12-15 04:30:14,837 | INFO     | did not find any defunct processes belonging to 26780
[2025-12-14 23:31:00] 2025-12-15 04:30:14,837 | INFO     | ready for new job
[2025-12-14 23:31:00] 2025-12-15 04:30:14,838 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 23:31:00] 2025-12-15 04:30:14,839 | INFO     | ***************************************
[2025-12-14 23:31:00] 2025-12-15 04:30:14,839 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 23:31:00] 2025-12-15 04:30:14,839 | INFO     | ***************************************
[2025-12-14 23:31:00] 2025-12-15 04:30:14,839 | INFO     | 
[2025-12-14 23:31:00] 2025-12-15 04:30:14,839 | INFO     | architecture information:
[2025-12-14 23:31:00] 2025-12-15 04:30:14,840 | INFO     | executing command: cat /etc/os-release
[2025-12-14 23:31:00] 2025-12-15 04:30:14,855 | INFO     | cat /etc/os-release:
[2025-12-14 23:31:00] NAME="CentOS Linux"
[2025-12-14 23:31:00] VERSION="7 (Core)"
[2025-12-14 23:31:00] ID="centos"
[2025-12-14 23:31:00] ID_LIKE="rhel fedora"
[2025-12-14 23:31:00] VERSION_ID="7"
[2025-12-14 23:31:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 23:31:00] ANSI_COLOR="0;31"
[2025-12-14 23:31:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 23:31:00] HOME_URL="https://www.centos.org/"
[2025-12-14 23:31:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 23:31:00] 
[2025-12-14 23:31:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 23:31:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 23:31:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 23:31:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 23:31:00] 
[2025-12-14 23:31:00] 2025-12-15 04:30:14,855 | INFO     | ***************************************
[2025-12-14 23:31:00] 2025-12-15 04:30:15,358 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 23:31:00] 2025-12-15 04:30:15,375 | INFO     | sufficient remaining disk space (29451354112 B)
[2025-12-14 23:31:00] 2025-12-15 04:30:15,376 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 23:31:00] 2025-12-15 04:30:15,376 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 23:31:00] 2025-12-15 04:30:15,376 | INFO     | update_server=False
[2025-12-14 23:31:00] 2025-12-15 04:30:15,376 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 23:31:00] 2025-12-15 04:30:15,376 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 23:31:00] 2025-12-15 04:30:15,833 | INFO     | all data control threads have been joined
[2025-12-14 23:31:00] 2025-12-15 04:30:15,982 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 23:31:00] 2025-12-15 04:30:15,982 | INFO     | aborting loop
[2025-12-14 23:31:00] 2025-12-15 04:30:16,085 | INFO     | all payload control threads have been joined
[2025-12-14 23:31:00] 2025-12-15 04:30:16,342 | INFO     | all job control threads have been joined
[2025-12-14 23:31:00] 2025-12-15 04:30:16,377 | INFO     | [job] queue monitor thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:16,382 | INFO     | [job] retrieve thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:16,458 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 23:31:00] 2025-12-15 04:30:16,712 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 23:31:00] 2025-12-15 04:30:16,752 | INFO     | [payload] validate_post thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:16,767 | INFO     | [job] validate thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:16,839 | INFO     | [data] control thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:16,987 | INFO     | [job] job monitor thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:17,033 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:17,091 | INFO     | [payload] control thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:17,226 | INFO     | [payload] failed_post thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:17,347 | INFO     | [job] control thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:17,356 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:17,401 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:17,604 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:17,791 | INFO     | [data] copytool_in thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:18,463 | INFO     | [data] copytool_out thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:20,718 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 23:31:00] 2025-12-15 04:30:45,868 | INFO     | PID=20309 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 23:31:00] 2025-12-15 04:30:45,868 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 23:31:00] 2025-12-15 04:30:45,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 23:31:00] 2025-12-15 04:30:45,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 23:31:00] 2025-12-15 04:30:54,634 | INFO     | [monitor] cgroup control has ended
[2025-12-14 23:31:00] 2025-12-15 04:30:55,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140079586678592)>', '<ExcThread(monitor, started 140078848390912)>']
[2025-12-14 23:31:00] 2025-12-15 04:30:55,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 23:31:00] 2025-12-15 04:30:55,912 | INFO     | [monitor] control thread has ended
[2025-12-14 23:31:00] 2025-12-15 04:31:00,223 | INFO     | all workflow threads have been joined
[2025-12-14 23:31:00] 2025-12-15 04:31:00,224 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 23:31:00] 2025-12-15 04:31:00,224 | INFO     | traces error code: 0
[2025-12-14 23:31:00] 2025-12-15 04:31:00,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 23:31:00] 2025-12-15 04:31:00,310 [wrapper] ==== pilot stdout END ====
[2025-12-14 23:31:00] 2025-12-15 04:31:00,313 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 23:31:00] 2025-12-15 04:31:00,316 [wrapper] pilotpid: 20309
[2025-12-14 23:31:00] 2025-12-15 04:31:00,320 [wrapper] Pilot exit status: 0
[2025-12-14 23:31:00] 2025-12-15 04:31:00,333 [wrapper] pandaids: 6929508234
[2025-12-14 23:31:00] 2025-12-15 04:31:00,378 [wrapper] cleanup supervisor_pilot 31195 20310
[2025-12-14 23:31:00] 2025-12-15 04:31:00,381 [wrapper] Test setup, not cleaning
[2025-12-14 23:31:00] 2025-12-15 04:31:00,385 [wrapper] apfmon messages muted
[2025-12-14 23:31:00] 2025-12-15 04:31:00,388 [wrapper] ==== wrapper stdout END ====
[2025-12-14 23:31:00] 2025-12-15 04:31:00,392 [wrapper] ==== wrapper stderr END ====
[2025-12-14 23:31:00]  *** Error codes and diagnostics ***
[2025-12-14 23:31:00]     "exeErrorCode": 0,
[2025-12-14 23:31:00]     "exeErrorDiag": "",
[2025-12-14 23:31:00]     "pilotErrorCode": 0,
[2025-12-14 23:31:00]     "pilotErrorDiag": "",
[2025-12-14 23:31:00]  *** Listing of results directory ***
[2025-12-14 23:31:00] total 340176
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas      5112 Dec 14 18:13 queuedata.json
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas    579449 Dec 14 18:13 pilot3.tar.gz
[2025-12-14 23:31:00] -rwx------ 1 boincer umatlas     36322 Dec 14 18:15 runpilot2-wrapper.sh
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas       100 Dec 14 22:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 23:31:00] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 22:05 run_atlas
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas       105 Dec 14 22:05 job.xml
[2025-12-14 23:31:00] -rw-r--r-- 2 boincer umatlas 193387684 Dec 14 22:05 EVNT.47886929._000216.pool.root.1
[2025-12-14 23:31:00] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 22:05 start_atlas.sh
[2025-12-14 23:31:00] drwxrwx--x 2 boincer umatlas      4096 Dec 14 22:05 shared
[2025-12-14 23:31:00] -rw-r--r-- 2 boincer umatlas    592399 Dec 14 22:05 input.tar.gz
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas         0 Dec 14 22:05 boinc_lockfile
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas      2513 Dec 14 22:05 pandaJob.out
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas        57 Dec 14 22:05 setup.sh.local
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas    991016 Dec 14 22:05 agis_schedconf.cvmfs.json
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas   1516240 Dec 14 22:05 agis_ddmendpoints.agis.ALL.json
[2025-12-14 23:31:00] drwx------ 5 boincer umatlas      4096 Dec 14 22:05 pilot3
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas      5951 Dec 14 23:27 init_data.xml
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas 148788982 Dec 14 23:29 HITS.47886933._004513.pool.root.1
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas        95 Dec 14 23:29 pilot_heartbeat.json
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas      1048 Dec 14 23:30 memory_monitor_summary.json
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas       530 Dec 14 23:30 boinc_task_state.xml
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas    395769 Dec 14 23:30 log.47886933._004513.job.log.tgz.1
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas      7863 Dec 14 23:30 heartbeat.json
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 23:30 boinc_mmap_file
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas        27 Dec 14 23:30 wrapper_checkpoint.txt
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas      4746 Dec 14 23:31 pilotlog.txt
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas    727757 Dec 14 23:31 log.47886933._004513.job.log.1
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas       357 Dec 14 23:31 output.list
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas       620 Dec 14 23:31 runtime_log
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas   1146880 Dec 14 23:31 result.tar.gz
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas       657 Dec 14 23:31 VApMDm7TAp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKYWKDmon7JCn.diag
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas      9339 Dec 14 23:31 runtime_log.err
[2025-12-14 23:31:00] -rw-r--r-- 1 boincer umatlas     21958 Dec 14 23:31 stderr.txt
[2025-12-14 23:31:00] HITS file was successfully produced:
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas 148788982 Dec 14 23:29 shared/HITS.pool.root.1
[2025-12-14 23:31:00]  *** Contents of shared directory: ***
[2025-12-14 23:31:00] total 335880
[2025-12-14 23:31:00] -rw-r--r-- 2 boincer umatlas 193387684 Dec 14 22:05 ATLAS.root_0
[2025-12-14 23:31:00] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 22:05 start_atlas.sh
[2025-12-14 23:31:00] -rw-r--r-- 2 boincer umatlas    592399 Dec 14 22:05 input.tar.gz
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas 148788982 Dec 14 23:29 HITS.pool.root.1
[2025-12-14 23:31:00] -rw------- 1 boincer umatlas   1146880 Dec 14 23:31 result.tar.gz
23:31:02 (16593): run_atlas exited; CPU time 50511.410301
23:31:02 (16593): called boinc_finish(0)

</stderr_txt>
]]>

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