Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:58:37 (394438): wrapper (7.7.26015): starting
15:58:37 (394438): wrapper: running run_atlas (--nthreads 4)
[2025-12-15 15:58:37] Arguments: --nthreads 4
[2025-12-15 15:58:37] Threads: 4
[2025-12-15 15:58:37] Checking for CVMFS
[2025-12-15 15:58:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 15:58:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 15:58:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 15:58:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 15:58:37] 2.9.2.0 3304 1211 83624 154035 3 57 28752465 36864000 0 130560 0 1013691 99.993 41023 9220 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 15:58:37] CVMFS is ok
[2025-12-15 15:58:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 15:58:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 15:58:37] Further information can be found at the LHC@home message board.
[2025-12-15 15:58:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 15:58:37] Checking for apptainer binary...
[2025-12-15 15:58:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 15:58:37] Running /usr/bin/apptainer --version
[2025-12-15 15:58:37] apptainer version 1.4.1-1.1
[2025-12-15 15:58:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 15:58:38] thA352
[2025-12-15 15:58:38] apptainer works
[2025-12-15 15:58:38] Set ATHENA_PROC_NUMBER=4
[2025-12-15 15:58:38] Set ATHENA_CORE_NUMBER=4
[2025-12-15 15:58:38] Starting ATLAS job with PandaID=6929450156
[2025-12-15 15:58:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 17:15:56]  *** The last 200 lines of the pilot log: ***
[2025-12-15 17:15:56]  protocol_id=None
[2025-12-15 17:15:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-15 17:15:56]  replicas=None
[2025-12-15 17:15:56]  scope=mc23_13p6TeV
[2025-12-15 17:15:56]  status=None
[2025-12-15 17:15:56]  status_code=0
[2025-12-15 17:15:56]  storage_token=
[2025-12-15 17:15:56]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6929450156/log.47886933._003670.job.log.tgz.1
[2025-12-15 17:15:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9b/37/log.47886933._003670.job.log.tgz.1
[2025-12-15 17:15:56]  workdir=None
[2025-12-15 17:15:56] ]
[2025-12-15 17:15:56] 2025-12-15 16:14:44,951 | INFO     | transferring file log.47886933._003670.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6929450156/log.47886933._003670.job.log.tgz.1 to /local/data/boinc/
[2025-12-15 17:15:56] 2025-12-15 16:14:44,952 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6929450156/log.47886933._003670.job.log.tgz.1 /local/data/boinc/slots/0/log.47886933._0036
[2025-12-15 17:15:56] 2025-12-15 16:14:44,970 | INFO     | adding to output.list: log.47886933._003670.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9b/37/log.47886933._003670.job.log.tg
[2025-12-15 17:15:56] 2025-12-15 16:14:44,971 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-15 17:15:56] 2025-12-15 16:14:44,971 | INFO     | summary of transferred files:
[2025-12-15 17:15:56] 2025-12-15 16:14:44,971 | INFO     |  -- lfn=log.47886933._003670.job.log.tgz.1, status_code=0, status=transferred
[2025-12-15 17:15:56] 2025-12-15 16:14:44,971 | INFO     | stage-out finished correctly
[2025-12-15 17:15:56] 2025-12-15 16:14:45,137 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-15 17:15:56] 2025-12-15 16:14:46,074 | WARNING  | process 404802 can no longer be monitored (due to stat problems) - aborting
[2025-12-15 17:15:56] 2025-12-15 16:14:46,074 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6929450156/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 17:15:56] 2025-12-15 16:14:46,115 | INFO     | number of running child processes to parent process 404802: 1
[2025-12-15 17:15:56] 2025-12-15 16:14:46,116 | INFO     | maximum number of monitored processes: 6
[2025-12-15 17:15:56] 2025-12-15 16:14:46,469 | INFO     | job 6929450156 has state=finished
[2025-12-15 17:15:56] 2025-12-15 16:14:46,470 | INFO     | preparing for final server update for job 6929450156 in state='finished'
[2025-12-15 17:15:56] 2025-12-15 16:14:46,470 | INFO     | this job has now completed (state=finished)
[2025-12-15 17:15:56] 2025-12-15 16:14:46,470 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-15 17:15:56] 2025-12-15 16:14:46,470 | INFO     | log transfer has been attempted: DONE
[2025-12-15 17:15:56] 2025-12-15 16:14:46,470 | INFO     | job 6929450156 has finished - writing final server update
[2025-12-15 17:15:56] 2025-12-15 16:14:46,470 | INFO     | total number of processed events: 400 (read)
[2025-12-15 17:15:56] 2025-12-15 16:14:46,472 | INFO     | executing command: lscpu
[2025-12-15 17:15:56] 2025-12-15 16:14:46,493 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-15 17:15:56] 2025-12-15 16:14:46,847 | INFO     | time since job start (4561s) is within the limit (174528.0s)
[2025-12-15 17:15:56] 2025-12-15 16:14:48,619 | INFO     | monitor loop #351: job 0:6929450156 is in state 'finished'
[2025-12-15 17:15:56] 2025-12-15 16:14:48,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 17:15:56] 2025-12-15 16:14:48,853 | INFO     | time since job start (4563s) is within the limit (174528.0s)
[2025-12-15 17:15:56] 2025-12-15 16:14:50,859 | INFO     | time since job start (4565s) is within the limit (174528.0s)
[2025-12-15 17:15:56] 2025-12-15 16:14:51,122 | INFO     | monitor loop #352: job 0:6929450156 is in state 'finished'
[2025-12-15 17:15:56] 2025-12-15 16:14:51,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 17:15:56] 2025-12-15 16:14:51,182 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-15 17:15:56] 2025-12-15 16:14:51,183 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3591.3051250000003
[2025-12-15 17:15:56] 2025-12-15 16:14:51,185 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6929450156/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 17:15:56] 2025-12-15 16:14:51,185 | INFO     | extracted standard info from prmon json
[2025-12-15 17:15:56] 2025-12-15 16:14:51,185 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 17:15:56] 2025-12-15 16:14:51,185 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 17:15:56] 2025-12-15 16:14:51,185 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 17:15:56] 2025-12-15 16:14:51,185 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 17:15:56] 2025-12-15 16:14:51,186 | INFO     | fitting pss+swap vs Time
[2025-12-15 17:15:56] 2025-12-15 16:14:51,186 | INFO     | sum of square deviations: 97479037.0
[2025-12-15 17:15:56] 2025-12-15 16:14:51,186 | INFO     | sum of deviations: 372536180.49999994
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | mean x: 1765813097.5
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | mean y: 2403887.0147058824
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | intersect: -6746013896.590645
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | chi2: 0.024890501824839553
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | current memory leak: 3.82 B/s (using 68 data points, chi2=0.02)
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | could have reported an average CPU frequency of 3792 MHz (6 samples)
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | ..............................
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | . Timing measurements:
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | . get job = 0 s
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | . initial setup = 1 s
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | . payload setup = 4 s
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | . stage-in = 0 s
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | . payload execution = 4536 s
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | . stage-out = 0 s
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | . log creation = 0 s
[2025-12-15 17:15:56] 2025-12-15 16:14:51,187 | INFO     | ..............................
[2025-12-15 17:15:56] 2025-12-15 16:14:51,284 | INFO     | 
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | job summary report
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | --------------------------------------------------
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | PanDA job id: 6929450156
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | task id: 47886933
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | errors: (none)
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | pilot state: finished 
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | transexitcode: 0
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | exeerrorcode: 0
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | exeerrordiag: 
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | exitcode: 0
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | exitmsg: OK
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | cpuconsumptiontime: 17212 s
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | nevents: 400
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | neventsw: 0
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | pid: 404802
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | pgrp: 404802
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | corecount: 4
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | event service: False
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | sizes: {0: 2283966, 3: 2284228, 11: 2284256, 4543: 2310517, 4544: 2310516, 4545: 2319760, 4551: 2319898}
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | --------------------------------------------------
[2025-12-15 17:15:56] 2025-12-15 16:14:51,285 | INFO     | 
[2025-12-15 17:15:56] 2025-12-15 16:14:51,286 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,306 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,307 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 17:15:56] 2025-12-15 16:14:51,307 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,307 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 17:15:56] 2025-12-15 16:14:51,307 | INFO     | job 6929450156 has completed (purged errors)
[2025-12-15 17:15:56] 2025-12-15 16:14:51,307 | INFO     | overall cleanup function is called
[2025-12-15 17:15:56] 2025-12-15 16:14:52,313 | INFO     | --- collectZombieJob: --- 10, [404802]
[2025-12-15 17:15:56] 2025-12-15 16:14:52,314 | INFO     | zombie collector waiting for pid 404802
[2025-12-15 17:15:56] 2025-12-15 16:14:52,314 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 17:15:56] 2025-12-15 16:14:52,314 | INFO     | collected zombie processes
[2025-12-15 17:15:56] 2025-12-15 16:14:52,314 | INFO     | will attempt to kill all subprocesses of pid=404802
[2025-12-15 17:15:56] 2025-12-15 16:14:52,360 | INFO     | process IDs to be killed: [404802] (in reverse order)
[2025-12-15 17:15:56] 2025-12-15 16:14:52,393 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 17:15:56] 2025-12-15 16:14:52,393 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 17:15:56] 2025-12-15 16:14:52,395 | INFO     | did not find any defunct processes belonging to 404802
[2025-12-15 17:15:56] 2025-12-15 16:14:52,396 | INFO     | did not find any defunct processes belonging to 404802
[2025-12-15 17:15:56] 2025-12-15 16:14:52,396 | INFO     | ready for new job
[2025-12-15 17:15:56] 2025-12-15 16:14:52,397 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 17:15:56] 2025-12-15 16:14:52,397 | INFO     | ***************************************
[2025-12-15 17:15:56] 2025-12-15 16:14:52,397 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 17:15:56] 2025-12-15 16:14:52,397 | INFO     | ***************************************
[2025-12-15 17:15:56] 2025-12-15 16:14:52,397 | INFO     | 
[2025-12-15 17:15:56] 2025-12-15 16:14:52,398 | INFO     | architecture information:
[2025-12-15 17:15:56] 2025-12-15 16:14:52,398 | INFO     | executing command: cat /etc/os-release
[2025-12-15 17:15:56] 2025-12-15 16:14:52,412 | INFO     | cat /etc/os-release:
[2025-12-15 17:15:56] NAME="CentOS Linux"
[2025-12-15 17:15:56] VERSION="7 (Core)"
[2025-12-15 17:15:56] ID="centos"
[2025-12-15 17:15:56] ID_LIKE="rhel fedora"
[2025-12-15 17:15:56] VERSION_ID="7"
[2025-12-15 17:15:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 17:15:56] ANSI_COLOR="0;31"
[2025-12-15 17:15:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 17:15:56] HOME_URL="https://www.centos.org/"
[2025-12-15 17:15:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 17:15:56] 
[2025-12-15 17:15:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 17:15:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 17:15:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 17:15:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 17:15:56] 
[2025-12-15 17:15:56] 2025-12-15 16:14:52,412 | INFO     | ***************************************
[2025-12-15 17:15:56] 2025-12-15 16:14:52,915 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 17:15:56] 2025-12-15 16:14:52,934 | INFO     | sufficient remaining disk space (230111051776 B)
[2025-12-15 17:15:56] 2025-12-15 16:14:52,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 17:15:56] 2025-12-15 16:14:52,934 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 17:15:56] 2025-12-15 16:14:52,934 | INFO     | update_server=False
[2025-12-15 17:15:56] 2025-12-15 16:14:52,934 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 17:15:56] 2025-12-15 16:14:52,934 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 17:15:56] 2025-12-15 16:14:52,934 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 17:15:56] 2025-12-15 16:14:52,934 | INFO     | aborting loop
[2025-12-15 17:15:56] 2025-12-15 16:14:53,021 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 17:15:56] 2025-12-15 16:14:53,588 | INFO     | all data control threads have been joined
[2025-12-15 17:15:56] 2025-12-15 16:14:53,872 | INFO     | all payload control threads have been joined
[2025-12-15 17:15:56] 2025-12-15 16:14:53,940 | INFO     | [job] retrieve thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:53,940 | INFO     | [job] queue monitor thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:53,940 | INFO     | [job] job monitor thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:54,000 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:54,107 | INFO     | [payload] failed_post thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:54,549 | INFO     | [data] copytool_in thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:54,577 | INFO     | all job control threads have been joined
[2025-12-15 17:15:56] 2025-12-15 16:14:54,594 | INFO     | [data] control thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:54,614 | INFO     | [payload] validate_post thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:54,697 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:54,877 | INFO     | [payload] control thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:55,027 | INFO     | [data] copytool_out thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:55,275 | INFO     | [job] validate thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:55,293 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:55,374 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:55,583 | INFO     | [job] control thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:14:55,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 17:15:56] 2025-12-15 16:14:59,694 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 17:15:56] 2025-12-15 16:15:23,991 | INFO     | PID=398241 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-15 17:15:56] 2025-12-15 16:15:23,992 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 17:15:56] 2025-12-15 16:15:23,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 17:15:56] 2025-12-15 16:15:23,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 17:15:56] 2025-12-15 16:15:50,499 | INFO     | [monitor] cgroup control has ended
[2025-12-15 17:15:56] 2025-12-15 16:15:51,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140078204000064)>', '<ExcThread(monitor, started 140077237778176)>']
[2025-12-15 17:15:56] 2025-12-15 16:15:52,142 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 17:15:56] 2025-12-15 16:15:52,142 | INFO     | [monitor] control thread has ended
[2025-12-15 17:15:56] 2025-12-15 16:15:56,751 | INFO     | all workflow threads have been joined
[2025-12-15 17:15:56] 2025-12-15 16:15:56,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 17:15:56] 2025-12-15 16:15:56,751 | INFO     | traces error code: 0
[2025-12-15 17:15:56] 2025-12-15 16:15:56,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 17:15:56] 2025-12-15 16:15:56,832 [wrapper] ==== pilot stdout END ====
[2025-12-15 17:15:56] 2025-12-15 16:15:56,836 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 17:15:56] 2025-12-15 16:15:56,840 [wrapper] pilotpid: 398241
[2025-12-15 17:15:56] 2025-12-15 16:15:56,844 [wrapper] Pilot exit status: 0
[2025-12-15 17:15:56] 2025-12-15 16:15:56,855 [wrapper] pandaids: 6929450156
[2025-12-15 17:15:56] 2025-12-15 16:15:56,879 [wrapper] cleanup supervisor_pilot  417362 398242
[2025-12-15 17:15:56] 2025-12-15 16:15:56,883 [wrapper] Test setup, not cleaning
[2025-12-15 17:15:56] 2025-12-15 16:15:56,887 [wrapper] apfmon messages muted
[2025-12-15 17:15:56] 2025-12-15 16:15:56,891 [wrapper] ==== wrapper stdout END ====
[2025-12-15 17:15:56] 2025-12-15 16:15:56,894 [wrapper] ==== wrapper stderr END ====
[2025-12-15 17:15:56]  *** Error codes and diagnostics ***
[2025-12-15 17:15:56]     "exeErrorCode": 0,
[2025-12-15 17:15:56]     "exeErrorDiag": "",
[2025-12-15 17:15:56]     "pilotErrorCode": 0,
[2025-12-15 17:15:56]     "pilotErrorDiag": "",
[2025-12-15 17:15:56]  *** Listing of results directory ***
[2025-12-15 17:15:56] total 342076
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc    579449 Dec 14 12:00 pilot3.tar.gz
[2025-12-15 17:15:56] -rwx------ 1 boinc boinc     36322 Dec 14 12:03 runpilot2-wrapper.sh
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc      5112 Dec 14 12:03 queuedata.json
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc       100 Dec 15 15:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 17:15:56] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 15:58 run_atlas
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc       105 Dec 15 15:58 job.xml
[2025-12-15 17:15:56] -rw-r--r-- 2 boinc boinc 193859629 Dec 15 15:58 EVNT.47886929._000165.pool.root.1
[2025-12-15 17:15:56] -rw-r--r-- 2 boinc boinc    592399 Dec 15 15:58 input.tar.gz
[2025-12-15 17:15:56] -rw-r--r-- 2 boinc boinc     15847 Dec 15 15:58 start_atlas.sh
[2025-12-15 17:15:56] drwxrwx--x 2 boinc boinc      4096 Dec 15 15:58 shared
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc         0 Dec 15 15:58 boinc_setup_complete
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc      6369 Dec 15 15:58 init_data.xml
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc         0 Dec 15 15:58 boinc_lockfile
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc      2512 Dec 15 15:58 pandaJob.out
[2025-12-15 17:15:56] -rw------- 1 boinc boinc    994497 Dec 15 15:58 agis_schedconf.cvmfs.json
[2025-12-15 17:15:56] -rw------- 1 boinc boinc   1516240 Dec 15 15:58 agis_ddmendpoints.agis.ALL.json
[2025-12-15 17:15:56] drwx------ 5 boinc boinc      4096 Dec 15 15:58 pilot3
[2025-12-15 17:15:56] -rw------- 1 boinc boinc 150657770 Dec 15 17:14 HITS.47886933._003670.pool.root.1
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc       529 Dec 15 17:14 boinc_task_state.xml
[2025-12-15 17:15:56] -rw------- 1 boinc boinc      1022 Dec 15 17:14 memory_monitor_summary.json
[2025-12-15 17:15:56] -rw------- 1 boinc boinc    251837 Dec 15 17:14 log.47886933._003670.job.log.tgz.1
[2025-12-15 17:15:56] -rw------- 1 boinc boinc      7752 Dec 15 17:14 heartbeat.json
[2025-12-15 17:15:56] -rw------- 1 boinc boinc        95 Dec 15 17:15 pilot_heartbeat.json
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc      8192 Dec 15 17:15 boinc_mmap_file
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc        27 Dec 15 17:15 wrapper_checkpoint.txt
[2025-12-15 17:15:56] -rw------- 1 boinc boinc      4751 Dec 15 17:15 pilotlog.txt
[2025-12-15 17:15:56] -rw------- 1 boinc boinc    672958 Dec 15 17:15 log.47886933._003670.job.log.1
[2025-12-15 17:15:56] -rw------- 1 boinc boinc       357 Dec 15 17:15 output.list
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc       620 Dec 15 17:15 runtime_log
[2025-12-15 17:15:56] -rw------- 1 boinc boinc    942080 Dec 15 17:15 result.tar.gz
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc      8897 Dec 15 17:15 runtime_log.err
[2025-12-15 17:15:56] -rw------- 1 boinc boinc       658 Dec 15 17:15 SnaMDmB4yo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoWVKDm1M3HRm.diag
[2025-12-15 17:15:56] -rw-r--r-- 1 boinc boinc     21871 Dec 15 17:15 stderr.txt
[2025-12-15 17:15:56] HITS file was successfully produced:
[2025-12-15 17:15:56] -rw------- 1 boinc boinc 150657770 Dec 15 17:14 shared/HITS.pool.root.1
[2025-12-15 17:15:56]  *** Contents of shared directory: ***
[2025-12-15 17:15:56] total 337972
[2025-12-15 17:15:56] -rw-r--r-- 2 boinc boinc 193859629 Dec 15 15:58 ATLAS.root_0
[2025-12-15 17:15:56] -rw-r--r-- 2 boinc boinc    592399 Dec 15 15:58 input.tar.gz
[2025-12-15 17:15:56] -rw-r--r-- 2 boinc boinc     15847 Dec 15 15:58 start_atlas.sh
[2025-12-15 17:15:56] -rw------- 1 boinc boinc 150657770 Dec 15 17:14 HITS.pool.root.1
[2025-12-15 17:15:56] -rw------- 1 boinc boinc    942080 Dec 15 17:15 result.tar.gz
17:15:58 (394438): run_atlas exited; CPU time 17227.941260
17:15:58 (394438): called boinc_finish(0)

</stderr_txt>
]]>

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