Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:19:43 (4126908): wrapper (7.7.26015): starting
14:19:43 (4126908): wrapper: running run_atlas (--nthreads 4)
[2025-12-15 14:19:43] Arguments: --nthreads 4
[2025-12-15 14:19:43] Threads: 4
[2025-12-15 14:19:43] Checking for CVMFS
[2025-12-15 14:19:43] No cvmfs_config command found, will try listing directly
[2025-12-15 14:19:43] CVMFS is ok
[2025-12-15 14:19:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 14:19:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 14:19:43] Further information can be found at the LHC@home message board.
[2025-12-15 14:19:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 14:19:43] Checking for apptainer binary...
[2025-12-15 14:19:43] which: no apptainer in ((null))
[2025-12-15 14:19:43] apptainer is not installed, using version from CVMFS
[2025-12-15 14:19:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 14:19:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-12-15 14:19:44] apptainer works
[2025-12-15 14:19:44] Set ATHENA_PROC_NUMBER=4
[2025-12-15 14:19:44] Set ATHENA_CORE_NUMBER=4
[2025-12-15 14:19:44] Starting ATLAS job with PandaID=6930659958
[2025-12-15 14:19:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 17:17:16]  *** The last 200 lines of the pilot log: ***
[2025-12-15 17:17:16] 2025-12-15 16:16:11,506 | INFO     | total number of processed events: 400 (read)
[2025-12-15 17:17:16] 2025-12-15 16:16:11,507 | INFO     | executing command: lscpu
[2025-12-15 17:17:16] 2025-12-15 16:16:11,563 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-15 17:17:16] 2025-12-15 16:16:11,858 | INFO     | monitor loop #765: job 0:6930659958 is in state 'finished'
[2025-12-15 17:17:16] 2025-12-15 16:16:11,858 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 17:17:16] 2025-12-15 16:16:12,764 | INFO     | time since job start (10578s) is within the limit (174528.0s)
[2025-12-15 17:17:16] 2025-12-15 16:16:14,361 | INFO     | monitor loop #766: job 0:6930659958 is in state 'finished'
[2025-12-15 17:17:16] 2025-12-15 16:16:14,361 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 17:17:16] 2025-12-15 16:16:14,770 | INFO     | time since job start (10580s) is within the limit (174528.0s)
[2025-12-15 17:17:16] 2025-12-15 16:16:15,765 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-15 17:17:16] 2025-12-15 16:16:15,776 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2652.2668281250008
[2025-12-15 17:17:16] 2025-12-15 16:16:15,789 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6930659958/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 17:17:16] 2025-12-15 16:16:15,790 | INFO     | extracted standard info from prmon json
[2025-12-15 17:17:16] 2025-12-15 16:16:15,790 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 17:17:16] 2025-12-15 16:16:15,790 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 17:17:16] 2025-12-15 16:16:15,791 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 17:17:16] 2025-12-15 16:16:15,791 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 17:17:16] 2025-12-15 16:16:15,795 | INFO     | fitting pss+swap vs Time
[2025-12-15 17:17:16] 2025-12-15 16:16:15,795 | INFO     | sum of square deviations: 1605470102.0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,796 | INFO     | sum of deviations: -7912362460.000003
[2025-12-15 17:17:16] 2025-12-15 16:16:15,796 | INFO     | mean x: 1765810066.0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,796 | INFO     | mean y: 2388282.4046242773
[2025-12-15 17:17:16] 2025-12-15 16:16:15,797 | INFO     | intersect: 8704966586.6056
[2025-12-15 17:17:16] 2025-12-15 16:16:15,797 | INFO     | chi2: 1.4591774759353844
[2025-12-15 17:17:16] 2025-12-15 16:16:15,797 | INFO     | sum of square deviations: 1470248962.0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,798 | INFO     | sum of deviations: -7237686233.999994
[2025-12-15 17:17:16] 2025-12-15 16:16:15,798 | INFO     | mean x: 1765809913.5
[2025-12-15 17:17:16] 2025-12-15 16:16:15,799 | INFO     | mean y: 2389041.285714286
[2025-12-15 17:17:16] 2025-12-15 16:16:15,799 | INFO     | intersect: 8695051599.206753
[2025-12-15 17:17:16] 2025-12-15 16:16:15,799 | INFO     | chi2: 1.4591725815168695
[2025-12-15 17:17:16] 2025-12-15 16:16:15,799 | INFO     | current chi2=1.4591725815168695 (change=0.0003354231130647733 %)
[2025-12-15 17:17:16] 2025-12-15 16:16:15,799 | INFO     | right removable region: 167
[2025-12-15 17:17:16] 2025-12-15 16:16:15,799 | INFO     | sum of square deviations: 1470248962.0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,800 | INFO     | sum of deviations: -30260982541.0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,801 | INFO     | mean x: 1765810218.5
[2025-12-15 17:17:16] 2025-12-15 16:16:15,801 | INFO     | mean y: 2413109.619047619
[2025-12-15 17:17:16] 2025-12-15 16:16:15,801 | INFO     | intersect: 36346701440.25614
[2025-12-15 17:17:16] 2025-12-15 16:16:15,801 | INFO     | chi2: 0.1150316205929158
[2025-12-15 17:17:16] 2025-12-15 16:16:15,801 | INFO     | current chi2=0.1150316205929158 (change=92.11668063069733 %)
[2025-12-15 17:17:16] 2025-12-15 16:16:15,801 | INFO     | sum of square deviations: 1342841922.0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,802 | INFO     | sum of deviations: -28595133541.0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,803 | INFO     | mean x: 1765810371.0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,803 | INFO     | mean y: 2411089.4969325154
[2025-12-15 17:17:16] 2025-12-15 16:16:15,803 | INFO     | intersect: 37604441931.38761
[2025-12-15 17:17:16] 2025-12-15 16:16:15,803 | INFO     | chi2: 0.11092609326758125
[2025-12-15 17:17:16] 2025-12-15 16:16:15,803 | INFO     | current chi2=0.11092609326758125 (change=3.569042411271903 %)
[2025-12-15 17:17:16] 2025-12-15 16:16:15,803 | INFO     | left removable region: 20
[2025-12-15 17:17:16] 2025-12-15 16:16:15,804 | INFO     | sum of square deviations: 984941258.0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,804 | INFO     | sum of deviations: -21186274169.999996
[2025-12-15 17:17:16] 2025-12-15 16:16:15,804 | INFO     | mean x: 1765810493.0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,805 | INFO     | mean y: 2404296.5782312923
[2025-12-15 17:17:16] 2025-12-15 16:16:15,805 | INFO     | intersect: 37985324529.73681
[2025-12-15 17:17:16] 2025-12-15 16:16:15,805 | INFO     | chi2: 0.10591554060401073
[2025-12-15 17:17:16] 2025-12-15 16:16:15,806 | INFO     | current memory leak: -21.51 B/s (using 147 data points, chi2=0.11)
[2025-12-15 17:17:16] 2025-12-15 16:16:15,806 | INFO     | could have reported an average CPU frequency of 2578 MHz (9 samples)
[2025-12-15 17:17:16] 2025-12-15 16:16:15,806 | INFO     | ..............................
[2025-12-15 17:17:16] 2025-12-15 16:16:15,806 | INFO     | . Timing measurements:
[2025-12-15 17:17:16] 2025-12-15 16:16:15,806 | INFO     | . get job = 0 s
[2025-12-15 17:17:16] 2025-12-15 16:16:15,807 | INFO     | . initial setup = 1 s
[2025-12-15 17:17:16] 2025-12-15 16:16:15,807 | INFO     | . payload setup = 5 s
[2025-12-15 17:17:16] 2025-12-15 16:16:15,807 | INFO     | . stage-in = 0 s
[2025-12-15 17:17:16] 2025-12-15 16:16:15,807 | INFO     | . payload execution = 10547 s
[2025-12-15 17:17:16] 2025-12-15 16:16:15,807 | INFO     | . stage-out = 0 s
[2025-12-15 17:17:16] 2025-12-15 16:16:15,807 | INFO     | . log creation = 0 s
[2025-12-15 17:17:16] 2025-12-15 16:16:15,807 | INFO     | ..............................
[2025-12-15 17:17:16] 2025-12-15 16:16:15,908 | INFO     | 
[2025-12-15 17:17:16] 2025-12-15 16:16:15,908 | INFO     | job summary report
[2025-12-15 17:17:16] 2025-12-15 16:16:15,908 | INFO     | --------------------------------------------------
[2025-12-15 17:17:16] 2025-12-15 16:16:15,908 | INFO     | PanDA job id: 6930659958
[2025-12-15 17:17:16] 2025-12-15 16:16:15,908 | INFO     | task id: 47898878
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | errors: (none)
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | pilot state: finished 
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | transexitcode: 0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | exeerrorcode: 0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | exeerrordiag: 
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | exitcode: 0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | exitmsg: OK
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | cpuconsumptiontime: 40609 s
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | nevents: 400
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | neventsw: 0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,909 | INFO     | pid: 4152220
[2025-12-15 17:17:16] 2025-12-15 16:16:15,910 | INFO     | pgrp: 4152220
[2025-12-15 17:17:16] 2025-12-15 16:16:15,910 | INFO     | corecount: 4
[2025-12-15 17:17:16] 2025-12-15 16:16:15,910 | INFO     | event service: False
[2025-12-15 17:17:16] 2025-12-15 16:16:15,910 | INFO     | sizes: {0: 2283903, 5: 2284165, 11: 2284221, 10557: 2313040, 10558: 2322060, 10560: 2322116, 10566: 2322502}
[2025-12-15 17:17:16] 2025-12-15 16:16:15,910 | INFO     | --------------------------------------------------
[2025-12-15 17:17:16] 2025-12-15 16:16:15,910 | INFO     | 
[2025-12-15 17:17:16] 2025-12-15 16:16:15,910 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-12-15 17:17:16] 2025-12-15 16:16:15,930 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,931 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,931 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,931 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,931 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,931 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,931 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,931 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,931 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,931 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,931 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,932 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,932 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,932 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,932 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,932 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,932 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 17:17:16] 2025-12-15 16:16:15,932 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,932 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 17:17:16] 2025-12-15 16:16:15,932 | INFO     | job 6930659958 has completed (purged errors)
[2025-12-15 17:17:16] 2025-12-15 16:16:15,933 | INFO     | overall cleanup function is called
[2025-12-15 17:17:16] 2025-12-15 16:16:16,941 | INFO     | --- collectZombieJob: --- 10, [4152220]
[2025-12-15 17:17:16] 2025-12-15 16:16:16,941 | INFO     | zombie collector waiting for pid 4152220
[2025-12-15 17:17:16] 2025-12-15 16:16:16,941 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 17:17:16] 2025-12-15 16:16:16,941 | INFO     | collected zombie processes
[2025-12-15 17:17:16] 2025-12-15 16:16:16,941 | INFO     | will attempt to kill all subprocesses of pid=4152220
[2025-12-15 17:17:16] 2025-12-15 16:16:17,350 | INFO     | process IDs to be killed: [4152220] (in reverse order)
[2025-12-15 17:17:16] 2025-12-15 16:16:17,462 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 17:17:16] 2025-12-15 16:16:17,462 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 17:17:16] 2025-12-15 16:16:17,475 | INFO     | did not find any defunct processes belonging to 4152220
[2025-12-15 17:17:16] 2025-12-15 16:16:17,488 | INFO     | did not find any defunct processes belonging to 4152220
[2025-12-15 17:17:16] 2025-12-15 16:16:17,489 | INFO     | ready for new job
[2025-12-15 17:17:16] 2025-12-15 16:16:17,489 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 17:17:16] 2025-12-15 16:16:17,491 | INFO     | ***************************************
[2025-12-15 17:17:16] 2025-12-15 16:16:17,492 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 17:17:16] 2025-12-15 16:16:17,492 | INFO     | ***************************************
[2025-12-15 17:17:16] 2025-12-15 16:16:17,492 | INFO     | 
[2025-12-15 17:17:16] 2025-12-15 16:16:17,496 | INFO     | architecture information:
[2025-12-15 17:17:16] 2025-12-15 16:16:17,496 | INFO     | executing command: cat /etc/os-release
[2025-12-15 17:17:16] 2025-12-15 16:16:17,511 | INFO     | cat /etc/os-release:
[2025-12-15 17:17:16] NAME="CentOS Linux"
[2025-12-15 17:17:16] VERSION="7 (Core)"
[2025-12-15 17:17:16] ID="centos"
[2025-12-15 17:17:16] ID_LIKE="rhel fedora"
[2025-12-15 17:17:16] VERSION_ID="7"
[2025-12-15 17:17:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 17:17:16] ANSI_COLOR="0;31"
[2025-12-15 17:17:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 17:17:16] HOME_URL="https://www.centos.org/"
[2025-12-15 17:17:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 17:17:16] 
[2025-12-15 17:17:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 17:17:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 17:17:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 17:17:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 17:17:16] 
[2025-12-15 17:17:16] 2025-12-15 16:16:17,512 | INFO     | ***************************************
[2025-12-15 17:17:16] 2025-12-15 16:16:18,015 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-12-15 17:17:16] 2025-12-15 16:16:18,033 | INFO     | sufficient remaining disk space (654427815936 B)
[2025-12-15 17:17:16] 2025-12-15 16:16:18,033 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 17:17:16] 2025-12-15 16:16:18,034 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 17:17:16] 2025-12-15 16:16:18,034 | INFO     | update_server=False
[2025-12-15 17:17:16] 2025-12-15 16:16:18,034 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 17:17:16] 2025-12-15 16:16:18,034 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 17:17:16] 2025-12-15 16:16:18,034 | INFO     | aborting loop
[2025-12-15 17:17:16] 2025-12-15 16:16:18,044 | INFO     | all data control threads have been joined
[2025-12-15 17:17:16] 2025-12-15 16:16:18,113 | INFO     | all payload control threads have been joined
[2025-12-15 17:17:16] 2025-12-15 16:16:18,234 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 17:17:16] 2025-12-15 16:16:18,849 | INFO     | all job control threads have been joined
[2025-12-15 17:17:16] 2025-12-15 16:16:19,037 | INFO     | [job] job monitor thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:19,039 | INFO     | [job] retrieve thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:19,050 | INFO     | [data] control thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:19,118 | INFO     | [payload] control thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:19,253 | INFO     | [job] validate thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:19,401 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:19,582 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:19,649 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:19,854 | INFO     | [job] control thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:19,955 | INFO     | [data] copytool_in thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:20,155 | INFO     | [payload] failed_post thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:20,239 | INFO     | [data] copytool_out thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:20,311 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:20,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 17:17:16] 2025-12-15 16:16:20,610 | INFO     | [payload] validate_post thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:20,917 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 17:17:16] 2025-12-15 16:16:21,923 | INFO     | [job] queue monitor thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:24,440 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 17:17:16] 2025-12-15 16:16:48,305 | INFO     | PID=4133479 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 17:17:16] 2025-12-15 16:16:48,305 | INFO     | .. there are 4 such processes running
[2025-12-15 17:17:16] 2025-12-15 16:16:48,306 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 17:17:16] 2025-12-15 16:16:48,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 17:17:16] 2025-12-15 16:16:48,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 17:17:16] 2025-12-15 16:17:11,418 | INFO     | [monitor] cgroup control has ended
[2025-12-15 17:17:16] 2025-12-15 16:17:11,425 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22453253891904)>', '<ExcThread(monitor, started 22452679735040)>']
[2025-12-15 17:17:16] 2025-12-15 16:17:12,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 17:17:16] 2025-12-15 16:17:12,420 | INFO     | [monitor] control thread has ended
[2025-12-15 17:17:16] 2025-12-15 16:17:16,449 | INFO     | all workflow threads have been joined
[2025-12-15 17:17:16] 2025-12-15 16:17:16,450 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 17:17:16] 2025-12-15 16:17:16,450 | INFO     | traces error code: 0
[2025-12-15 17:17:16] 2025-12-15 16:17:16,450 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 17:17:16] 2025-12-15 16:17:16,593 [wrapper] ==== pilot stdout END ====
[2025-12-15 17:17:16] 2025-12-15 16:17:16,596 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 17:17:16] 2025-12-15 16:17:16,599 [wrapper] pilotpid: 4133479
[2025-12-15 17:17:16] 2025-12-15 16:17:16,601 [wrapper] Pilot exit status: 0
[2025-12-15 17:17:16] 2025-12-15 16:17:16,613 [wrapper] pandaids: 6930659958
[2025-12-15 17:17:16] 2025-12-15 16:17:16,696 [wrapper] cleanup supervisor_pilot  100385 4133480
[2025-12-15 17:17:16] 2025-12-15 16:17:16,699 [wrapper] Test setup, not cleaning
[2025-12-15 17:17:16] 2025-12-15 16:17:16,702 [wrapper] apfmon messages muted
[2025-12-15 17:17:16] 2025-12-15 16:17:16,705 [wrapper] ==== wrapper stdout END ====
[2025-12-15 17:17:16] 2025-12-15 16:17:16,708 [wrapper] ==== wrapper stderr END ====
[2025-12-15 17:17:16]  *** Error codes and diagnostics ***
[2025-12-15 17:17:16]     "exeErrorCode": 0,
[2025-12-15 17:17:16]     "exeErrorDiag": "",
[2025-12-15 17:17:16]     "pilotErrorCode": 0,
[2025-12-15 17:17:16]     "pilotErrorDiag": "",
[2025-12-15 17:17:16]  *** Listing of results directory ***
[2025-12-15 17:17:16] total 375072
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc    579449 Dec 14 16:56 pilot3.tar.gz
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc      5112 Dec 14 16:56 queuedata.json
[2025-12-15 17:17:16] -rwx------ 1 boinc boinc     36322 Dec 14 16:56 runpilot2-wrapper.sh
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc       100 Dec 15 14:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 17:17:16] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 14:19 run_atlas
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc       105 Dec 15 14:19 job.xml
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc      6638 Dec 15 14:19 init_data.xml
[2025-12-15 17:17:16] -rw-r--r-- 2 boinc boinc 197341966 Dec 15 14:19 EVNT.47898875._000054.pool.root.1
[2025-12-15 17:17:16] -rw-r--r-- 2 boinc boinc     15847 Dec 15 14:19 start_atlas.sh
[2025-12-15 17:17:16] drwxrwx--x 2 boinc boinc      4096 Dec 15 14:19 shared
[2025-12-15 17:17:16] -rw-r--r-- 2 boinc boinc    592390 Dec 15 14:19 input.tar.gz
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc         0 Dec 15 14:19 boinc_lockfile
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc      2499 Dec 15 14:19 pandaJob.out
[2025-12-15 17:17:16] -rw------- 1 boinc boinc    991020 Dec 15 14:19 agis_schedconf.cvmfs.json
[2025-12-15 17:17:16] -rw------- 1 boinc boinc   1516240 Dec 15 14:19 agis_ddmendpoints.agis.ALL.json
[2025-12-15 17:17:16] drwx------ 5 boinc boinc      4096 Dec 15 14:19 pilot3
[2025-12-15 17:17:16] -rw------- 1 boinc boinc 179122942 Dec 15 17:15 HITS.47898878._001359.pool.root.1
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc       528 Dec 15 17:15 boinc_task_state.xml
[2025-12-15 17:17:16] -rw------- 1 boinc boinc      1033 Dec 15 17:16 memory_monitor_summary.json
[2025-12-15 17:17:16] -rw------- 1 boinc boinc    344412 Dec 15 17:16 log.47898878._001359.job.log.tgz.1
[2025-12-15 17:17:16] -rw------- 1 boinc boinc      7827 Dec 15 17:16 heartbeat.json
[2025-12-15 17:17:16] -rw------- 1 boinc boinc        95 Dec 15 17:16 pilot_heartbeat.json
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc      8192 Dec 15 17:17 boinc_mmap_file
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc        27 Dec 15 17:17 wrapper_checkpoint.txt
[2025-12-15 17:17:16] -rw------- 1 boinc boinc      4833 Dec 15 17:17 pilotlog.txt
[2025-12-15 17:17:16] -rw------- 1 boinc boinc   1501615 Dec 15 17:17 log.47898878._001359.job.log.1
[2025-12-15 17:17:16] -rw------- 1 boinc boinc       357 Dec 15 17:17 output.list
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc       620 Dec 15 17:17 runtime_log
[2025-12-15 17:17:16] -rw------- 1 boinc boinc   1863680 Dec 15 17:17 result.tar.gz
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc      9206 Dec 15 17:17 runtime_log.err
[2025-12-15 17:17:16] -rw------- 1 boinc boinc       665 Dec 15 17:17 25YMDmKd3o8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJqVKDmF2qFIn.diag
[2025-12-15 17:17:16] -rw-r--r-- 1 boinc boinc     21153 Dec 15 17:17 stderr.txt
[2025-12-15 17:17:16] HITS file was successfully produced:
[2025-12-15 17:17:16] -rw------- 1 boinc boinc 179122942 Dec 15 17:15 shared/HITS.pool.root.1
[2025-12-15 17:17:16]  *** Contents of shared directory: ***
[2025-12-15 17:17:16] total 370072
[2025-12-15 17:17:16] -rw-r--r-- 2 boinc boinc 197341966 Dec 15 14:19 ATLAS.root_0
[2025-12-15 17:17:16] -rw-r--r-- 2 boinc boinc     15847 Dec 15 14:19 start_atlas.sh
[2025-12-15 17:17:16] -rw-r--r-- 2 boinc boinc    592390 Dec 15 14:19 input.tar.gz
[2025-12-15 17:17:16] -rw------- 1 boinc boinc 179122942 Dec 15 17:15 HITS.pool.root.1
[2025-12-15 17:17:16] -rw------- 1 boinc boinc   1863680 Dec 15 17:17 result.tar.gz
17:17:18 (4126908): run_atlas exited; CPU time 41041.015951
17:17:18 (4126908): called boinc_finish(0)

</stderr_txt>
]]>

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