Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:17:26 (126252): wrapper (7.7.26015): starting
17:17:26 (126252): wrapper: running run_atlas (--nthreads 4)
[2025-12-15 17:17:26] Arguments: --nthreads 4
[2025-12-15 17:17:26] Threads: 4
[2025-12-15 17:17:26] Checking for CVMFS
[2025-12-15 17:17:26] No cvmfs_config command found, will try listing directly
[2025-12-15 17:17:26] CVMFS is ok
[2025-12-15 17:17:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 17:17:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 17:17:26] Further information can be found at the LHC@home message board.
[2025-12-15 17:17:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 17:17:26] Checking for apptainer binary...
[2025-12-15 17:17:26] which: no apptainer in ((null))
[2025-12-15 17:17:26] apptainer is not installed, using version from CVMFS
[2025-12-15 17:17:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 17:17:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-12-15 17:17:27] apptainer works
[2025-12-15 17:17:27] Set ATHENA_PROC_NUMBER=4
[2025-12-15 17:17:27] Set ATHENA_CORE_NUMBER=4
[2025-12-15 17:17:27] Starting ATLAS job with PandaID=6929482905
[2025-12-15 17:17:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 21:35:08]  *** The last 200 lines of the pilot log: ***
[2025-12-15 21:35:08] 2025-12-15 20:34:20,013 | INFO     | total number of processed events: 400 (read)
[2025-12-15 21:35:08] 2025-12-15 20:34:20,014 | INFO     | executing command: lscpu
[2025-12-15 21:35:08] 2025-12-15 20:34:20,069 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-15 21:35:08] 2025-12-15 20:34:21,027 | INFO     | time since job start (15404s) is within the limit (174528.0s)
[2025-12-15 21:35:08] 2025-12-15 20:34:21,394 | INFO     | monitor loop #1114: job 0:6929482905 is in state 'finished'
[2025-12-15 21:35:08] 2025-12-15 20:34:21,394 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 21:35:08] 2025-12-15 20:34:23,030 | INFO     | time since job start (15406s) is within the limit (174528.0s)
[2025-12-15 21:35:08] 2025-12-15 20:34:23,896 | INFO     | monitor loop #1115: job 0:6929482905 is in state 'finished'
[2025-12-15 21:35:08] 2025-12-15 20:34:23,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 21:35:08] 2025-12-15 20:34:24,583 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-15 21:35:08] 2025-12-15 20:34:24,593 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2582.313828125001
[2025-12-15 21:35:08] 2025-12-15 20:34:24,605 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6929482905/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 21:35:08] 2025-12-15 20:34:24,607 | INFO     | extracted standard info from prmon json
[2025-12-15 21:35:08] 2025-12-15 20:34:24,607 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 21:35:08] 2025-12-15 20:34:24,607 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 21:35:08] 2025-12-15 20:34:24,607 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 21:35:08] 2025-12-15 20:34:24,607 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 21:35:08] 2025-12-15 20:34:24,612 | INFO     | fitting pss+swap vs Time
[2025-12-15 21:35:08] 2025-12-15 20:34:24,613 | INFO     | sum of square deviations: 4962187923.0
[2025-12-15 21:35:08] 2025-12-15 20:34:24,615 | INFO     | sum of deviations: -80812677084.99998
[2025-12-15 21:35:08] 2025-12-15 20:34:24,615 | INFO     | mean x: 1765823139.5
[2025-12-15 21:35:08] 2025-12-15 20:34:24,615 | INFO     | mean y: 2422115.4285714286
[2025-12-15 21:35:08] 2025-12-15 20:34:24,615 | INFO     | intersect: 28760078491.199486
[2025-12-15 21:35:08] 2025-12-15 20:34:24,615 | INFO     | chi2: 1.7503947380428082
[2025-12-15 21:35:08] 2025-12-15 20:34:24,616 | INFO     | sum of square deviations: 4672638308.0
[2025-12-15 21:35:08] 2025-12-15 20:34:24,618 | INFO     | sum of deviations: -78588985525.00003
[2025-12-15 21:35:08] 2025-12-15 20:34:24,618 | INFO     | mean x: 1765822987.0
[2025-12-15 21:35:08] 2025-12-15 20:34:24,618 | INFO     | mean y: 2423286.753036437
[2025-12-15 21:35:08] 2025-12-15 20:34:24,618 | INFO     | intersect: 29701755445.088654
[2025-12-15 21:35:08] 2025-12-15 20:34:24,618 | INFO     | chi2: 1.7435018737295427
[2025-12-15 21:35:08] 2025-12-15 20:34:24,618 | INFO     | current chi2=1.7435018737295427 (change=0.39378913587073117 %)
[2025-12-15 21:35:08] 2025-12-15 20:34:24,619 | INFO     | right removable region: 246
[2025-12-15 21:35:08] 2025-12-15 20:34:24,619 | INFO     | sum of square deviations: 4672638308.0
[2025-12-15 21:35:08] 2025-12-15 20:34:24,621 | INFO     | sum of deviations: -108061693431.00002
[2025-12-15 21:35:08] 2025-12-15 20:34:24,621 | INFO     | mean x: 1765823292.0
[2025-12-15 21:35:08] 2025-12-15 20:34:24,621 | INFO     | mean y: 2436275.28340081
[2025-12-15 21:35:08] 2025-12-15 20:34:24,621 | INFO     | intersect: 40839719766.009605
[2025-12-15 21:35:08] 2025-12-15 20:34:24,621 | INFO     | chi2: 0.5100143822989964
[2025-12-15 21:35:08] 2025-12-15 20:34:24,621 | INFO     | current chi2=0.5100143822989964 (change=70.8628933111816 %)
[2025-12-15 21:35:08] 2025-12-15 20:34:24,622 | INFO     | sum of square deviations: 4394577280.5
[2025-12-15 21:35:08] 2025-12-15 20:34:24,623 | INFO     | sum of deviations: -98365258115.0
[2025-12-15 21:35:08] 2025-12-15 20:34:24,624 | INFO     | mean x: 1765823444.5
[2025-12-15 21:35:08] 2025-12-15 20:34:24,624 | INFO     | mean y: 2430945.727272727
[2025-12-15 21:35:08] 2025-12-15 20:34:24,624 | INFO     | intersect: 39527433651.78923
[2025-12-15 21:35:08] 2025-12-15 20:34:24,624 | INFO     | chi2: 0.5016167223247168
[2025-12-15 21:35:08] 2025-12-15 20:34:24,624 | INFO     | current chi2=0.5016167223247168 (change=1.6465535611810498 %)
[2025-12-15 21:35:08] 2025-12-15 20:34:24,625 | INFO     | left removable region: 20
[2025-12-15 21:35:08] 2025-12-15 20:34:24,625 | INFO     | sum of square deviations: 3579276412.5
[2025-12-15 21:35:08] 2025-12-15 20:34:24,626 | INFO     | sum of deviations: -73017600697.5
[2025-12-15 21:35:08] 2025-12-15 20:34:24,626 | INFO     | mean x: 1765823566.5
[2025-12-15 21:35:08] 2025-12-15 20:34:24,626 | INFO     | mean y: 2418863.243362832
[2025-12-15 21:35:08] 2025-12-15 20:34:24,627 | INFO     | intersect: 36025398153.31582
[2025-12-15 21:35:08] 2025-12-15 20:34:24,627 | INFO     | chi2: 0.4524566911153799
[2025-12-15 21:35:08] 2025-12-15 20:34:24,627 | INFO     | current memory leak: -20.40 B/s (using 226 data points, chi2=0.45)
[2025-12-15 21:35:08] 2025-12-15 20:34:24,628 | INFO     | could have reported an average CPU frequency of 2572 MHz (12 samples)
[2025-12-15 21:35:08] 2025-12-15 20:34:24,628 | INFO     | ..............................
[2025-12-15 21:35:08] 2025-12-15 20:34:24,628 | INFO     | . Timing measurements:
[2025-12-15 21:35:08] 2025-12-15 20:34:24,628 | INFO     | . get job = 0 s
[2025-12-15 21:35:08] 2025-12-15 20:34:24,628 | INFO     | . initial setup = 1 s
[2025-12-15 21:35:08] 2025-12-15 20:34:24,628 | INFO     | . payload setup = 6 s
[2025-12-15 21:35:08] 2025-12-15 20:34:24,628 | INFO     | . stage-in = 0 s
[2025-12-15 21:35:08] 2025-12-15 20:34:24,629 | INFO     | . payload execution = 15370 s
[2025-12-15 21:35:08] 2025-12-15 20:34:24,629 | INFO     | . stage-out = 1 s
[2025-12-15 21:35:08] 2025-12-15 20:34:24,629 | INFO     | . log creation = 0 s
[2025-12-15 21:35:08] 2025-12-15 20:34:24,629 | INFO     | ..............................
[2025-12-15 21:35:08] 2025-12-15 20:34:24,723 | INFO     | 
[2025-12-15 21:35:08] 2025-12-15 20:34:24,724 | INFO     | job summary report
[2025-12-15 21:35:08] 2025-12-15 20:34:24,724 | INFO     | --------------------------------------------------
[2025-12-15 21:35:08] 2025-12-15 20:34:24,724 | INFO     | PanDA job id: 6929482905
[2025-12-15 21:35:08] 2025-12-15 20:34:24,724 | INFO     | task id: 47898782
[2025-12-15 21:35:08] 2025-12-15 20:34:24,724 | INFO     | errors: (none)
[2025-12-15 21:35:08] 2025-12-15 20:34:24,724 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 21:35:08] 2025-12-15 20:34:24,724 | INFO     | pilot state: finished 
[2025-12-15 21:35:08] 2025-12-15 20:34:24,724 | INFO     | transexitcode: 0
[2025-12-15 21:35:08] 2025-12-15 20:34:24,724 | INFO     | exeerrorcode: 0
[2025-12-15 21:35:08] 2025-12-15 20:34:24,724 | INFO     | exeerrordiag: 
[2025-12-15 21:35:08] 2025-12-15 20:34:24,724 | INFO     | exitcode: 0
[2025-12-15 21:35:08] 2025-12-15 20:34:24,725 | INFO     | exitmsg: OK
[2025-12-15 21:35:08] 2025-12-15 20:34:24,725 | INFO     | cpuconsumptiontime: 59696 s
[2025-12-15 21:35:08] 2025-12-15 20:34:24,725 | INFO     | nevents: 400
[2025-12-15 21:35:08] 2025-12-15 20:34:24,725 | INFO     | neventsw: 0
[2025-12-15 21:35:08] 2025-12-15 20:34:24,725 | INFO     | pid: 136962
[2025-12-15 21:35:08] 2025-12-15 20:34:24,725 | INFO     | pgrp: 136962
[2025-12-15 21:35:08] 2025-12-15 20:34:24,725 | INFO     | corecount: 4
[2025-12-15 21:35:08] 2025-12-15 20:34:24,725 | INFO     | event service: False
[2025-12-15 21:35:08] 2025-12-15 20:34:24,725 | INFO     | sizes: {0: 2283820, 1: 2284019, 5: 2284281, 11: 2284337, 15380: 2315499, 15382: 2324519, 15385: 2324703, 15391: 2324897}
[2025-12-15 21:35:08] 2025-12-15 20:34:24,725 | INFO     | --------------------------------------------------
[2025-12-15 21:35:08] 2025-12-15 20:34:24,725 | INFO     | 
[2025-12-15 21:35:08] 2025-12-15 20:34:24,726 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-12-15 21:35:08] 2025-12-15 20:34:24,748 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,748 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,749 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,749 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,749 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,749 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,749 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,749 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,750 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,750 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,750 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,750 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,750 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 21:35:08] 2025-12-15 20:34:24,750 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,750 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 21:35:08] 2025-12-15 20:34:24,750 | INFO     | job 6929482905 has completed (purged errors)
[2025-12-15 21:35:08] 2025-12-15 20:34:24,751 | INFO     | overall cleanup function is called
[2025-12-15 21:35:08] 2025-12-15 20:34:25,758 | INFO     | --- collectZombieJob: --- 10, [136962]
[2025-12-15 21:35:08] 2025-12-15 20:34:25,759 | INFO     | zombie collector waiting for pid 136962
[2025-12-15 21:35:08] 2025-12-15 20:34:25,759 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 21:35:08] 2025-12-15 20:34:25,759 | INFO     | collected zombie processes
[2025-12-15 21:35:08] 2025-12-15 20:34:25,759 | INFO     | will attempt to kill all subprocesses of pid=136962
[2025-12-15 21:35:08] 2025-12-15 20:34:26,138 | INFO     | process IDs to be killed: [136962] (in reverse order)
[2025-12-15 21:35:08] 2025-12-15 20:34:26,242 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 21:35:08] 2025-12-15 20:34:26,242 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 21:35:08] 2025-12-15 20:34:26,252 | INFO     | did not find any defunct processes belonging to 136962
[2025-12-15 21:35:08] 2025-12-15 20:34:26,262 | INFO     | did not find any defunct processes belonging to 136962
[2025-12-15 21:35:08] 2025-12-15 20:34:26,262 | INFO     | ready for new job
[2025-12-15 21:35:08] 2025-12-15 20:34:26,262 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 21:35:08] 2025-12-15 20:34:26,264 | INFO     | ***************************************
[2025-12-15 21:35:08] 2025-12-15 20:34:26,264 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 21:35:08] 2025-12-15 20:34:26,264 | INFO     | ***************************************
[2025-12-15 21:35:08] 2025-12-15 20:34:26,264 | INFO     | 
[2025-12-15 21:35:08] 2025-12-15 20:34:26,267 | INFO     | architecture information:
[2025-12-15 21:35:08] 2025-12-15 20:34:26,267 | INFO     | executing command: cat /etc/os-release
[2025-12-15 21:35:08] 2025-12-15 20:34:26,278 | INFO     | cat /etc/os-release:
[2025-12-15 21:35:08] NAME="CentOS Linux"
[2025-12-15 21:35:08] VERSION="7 (Core)"
[2025-12-15 21:35:08] ID="centos"
[2025-12-15 21:35:08] ID_LIKE="rhel fedora"
[2025-12-15 21:35:08] VERSION_ID="7"
[2025-12-15 21:35:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 21:35:08] ANSI_COLOR="0;31"
[2025-12-15 21:35:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 21:35:08] HOME_URL="https://www.centos.org/"
[2025-12-15 21:35:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 21:35:08] 
[2025-12-15 21:35:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 21:35:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 21:35:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 21:35:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 21:35:08] 
[2025-12-15 21:35:08] 2025-12-15 20:34:26,278 | INFO     | ***************************************
[2025-12-15 21:35:08] 2025-12-15 20:34:26,781 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-12-15 21:35:08] 2025-12-15 20:34:26,797 | INFO     | sufficient remaining disk space (646058082304 B)
[2025-12-15 21:35:08] 2025-12-15 20:34:26,798 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 21:35:08] 2025-12-15 20:34:26,798 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 21:35:08] 2025-12-15 20:34:26,798 | INFO     | update_server=False
[2025-12-15 21:35:08] 2025-12-15 20:34:26,798 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 21:35:08] 2025-12-15 20:34:26,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 21:35:08] 2025-12-15 20:34:26,866 | INFO     | all payload control threads have been joined
[2025-12-15 21:35:08] 2025-12-15 20:34:27,404 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 21:35:08] 2025-12-15 20:34:27,405 | INFO     | aborting loop
[2025-12-15 21:35:08] 2025-12-15 20:34:27,407 | INFO     | all job control threads have been joined
[2025-12-15 21:35:08] 2025-12-15 20:34:27,774 | INFO     | all data control threads have been joined
[2025-12-15 21:35:08] 2025-12-15 20:34:27,804 | INFO     | [job] retrieve thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:27,835 | INFO     | [payload] validate_post thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:27,872 | INFO     | [payload] control thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:28,028 | INFO     | [job] validate thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:28,068 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:28,229 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:28,405 | INFO     | [job] job monitor thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:28,413 | INFO     | [job] control thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:28,529 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:28,595 | INFO     | [data] copytool_in thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:28,780 | INFO     | [data] control thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:28,804 | INFO     | [data] copytool_out thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:28,936 | INFO     | [payload] failed_post thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:29,010 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 21:35:08] 2025-12-15 20:34:29,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:29,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 21:35:08] 2025-12-15 20:34:30,741 | INFO     | [job] queue monitor thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:33,016 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 21:35:08] 2025-12-15 20:34:56,626 | INFO     | PID=130044 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-15 21:35:08] 2025-12-15 20:34:56,627 | INFO     | .. there are 4 such processes running
[2025-12-15 21:35:08] 2025-12-15 20:34:56,627 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 21:35:08] 2025-12-15 20:34:56,627 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 21:35:08] 2025-12-15 20:34:56,627 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 21:35:08] 2025-12-15 20:35:02,447 | INFO     | [monitor] cgroup control has ended
[2025-12-15 21:35:08] 2025-12-15 20:35:02,752 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23048537184064)>', '<ExcThread(monitor, started 23048296032000)>']
[2025-12-15 21:35:08] 2025-12-15 20:35:03,661 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 21:35:08] 2025-12-15 20:35:03,661 | INFO     | [monitor] control thread has ended
[2025-12-15 21:35:08] 2025-12-15 20:35:07,776 | INFO     | all workflow threads have been joined
[2025-12-15 21:35:08] 2025-12-15 20:35:07,777 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 21:35:08] 2025-12-15 20:35:07,777 | INFO     | traces error code: 0
[2025-12-15 21:35:08] 2025-12-15 20:35:07,777 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 21:35:08] 2025-12-15 20:35:07,925 [wrapper] ==== pilot stdout END ====
[2025-12-15 21:35:08] 2025-12-15 20:35:07,927 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 21:35:08] 2025-12-15 20:35:07,929 [wrapper] pilotpid: 130044
[2025-12-15 21:35:08] 2025-12-15 20:35:07,931 [wrapper] Pilot exit status: 0
[2025-12-15 21:35:08] 2025-12-15 20:35:07,940 [wrapper] pandaids: 6929482905
[2025-12-15 21:35:08] 2025-12-15 20:35:08,000 [wrapper] cleanup supervisor_pilot  333354 130045
[2025-12-15 21:35:08] 2025-12-15 20:35:08,002 [wrapper] Test setup, not cleaning
[2025-12-15 21:35:08] 2025-12-15 20:35:08,004 [wrapper] apfmon messages muted
[2025-12-15 21:35:08] 2025-12-15 20:35:08,007 [wrapper] ==== wrapper stdout END ====
[2025-12-15 21:35:08] 2025-12-15 20:35:08,009 [wrapper] ==== wrapper stderr END ====
[2025-12-15 21:35:08]  *** Error codes and diagnostics ***
[2025-12-15 21:35:08]     "exeErrorCode": 0,
[2025-12-15 21:35:08]     "exeErrorDiag": "",
[2025-12-15 21:35:08]     "pilotErrorCode": 0,
[2025-12-15 21:35:08]     "pilotErrorDiag": "",
[2025-12-15 21:35:08]  *** Listing of results directory ***
[2025-12-15 21:35:08] total 416608
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc    579449 Dec 14 21:38 pilot3.tar.gz
[2025-12-15 21:35:08] -rwx------ 1 boinc boinc     36322 Dec 14 21:41 runpilot2-wrapper.sh
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc      5112 Dec 14 21:43 queuedata.json
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc       100 Dec 15 17:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 21:35:08] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 17:17 run_atlas
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc       105 Dec 15 17:17 job.xml
[2025-12-15 21:35:08] -rw-r--r-- 2 boinc boinc 216465901 Dec 15 17:17 EVNT.47898779._000169.pool.root.1
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc      6638 Dec 15 17:17 init_data.xml
[2025-12-15 21:35:08] -rw-r--r-- 2 boinc boinc     15847 Dec 15 17:17 start_atlas.sh
[2025-12-15 21:35:08] drwxrwx--x 2 boinc boinc      4096 Dec 15 17:17 shared
[2025-12-15 21:35:08] -rw-r--r-- 2 boinc boinc    592396 Dec 15 17:17 input.tar.gz
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc         0 Dec 15 17:17 boinc_lockfile
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc      2522 Dec 15 17:17 pandaJob.out
[2025-12-15 21:35:08] -rw------- 1 boinc boinc    994465 Dec 15 17:17 agis_schedconf.cvmfs.json
[2025-12-15 21:35:08] drwx------ 5 boinc boinc      4096 Dec 15 17:17 pilot3
[2025-12-15 21:35:08] -rw------- 1 boinc boinc 201018659 Dec 15 21:33 HITS.47898782._004067.pool.root.1
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc       528 Dec 15 21:34 boinc_task_state.xml
[2025-12-15 21:35:08] -rw------- 1 boinc boinc      1048 Dec 15 21:34 memory_monitor_summary.json
[2025-12-15 21:35:08] -rw------- 1 boinc boinc   1516240 Dec 15 21:34 agis_ddmendpoints.agis.ALL.json
[2025-12-15 21:35:08] -rw------- 1 boinc boinc    434696 Dec 15 21:34 log.47898782._004067.job.log.tgz.1
[2025-12-15 21:35:08] -rw------- 1 boinc boinc        95 Dec 15 21:34 pilot_heartbeat.json
[2025-12-15 21:35:08] -rw------- 1 boinc boinc      7831 Dec 15 21:34 heartbeat.json
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc        27 Dec 15 21:35 wrapper_checkpoint.txt
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc      8192 Dec 15 21:35 boinc_mmap_file
[2025-12-15 21:35:08] -rw------- 1 boinc boinc      4832 Dec 15 21:35 pilotlog.txt
[2025-12-15 21:35:08] -rw------- 1 boinc boinc   2165123 Dec 15 21:35 log.47898782._004067.job.log.1
[2025-12-15 21:35:08] -rw------- 1 boinc boinc       357 Dec 15 21:35 output.list
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc       620 Dec 15 21:35 runtime_log
[2025-12-15 21:35:08] -rw------- 1 boinc boinc   2621440 Dec 15 21:35 result.tar.gz
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc      9206 Dec 15 21:35 runtime_log.err
[2025-12-15 21:35:08] -rw------- 1 boinc boinc       666 Dec 15 21:35 L68NDmb57o8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1UWKDmN0WkUo.diag
[2025-12-15 21:35:08] -rw-r--r-- 1 boinc boinc     21153 Dec 15 21:35 stderr.txt
[2025-12-15 21:35:08] HITS file was successfully produced:
[2025-12-15 21:35:08] -rw------- 1 boinc boinc 201018659 Dec 15 21:33 shared/HITS.pool.root.1
[2025-12-15 21:35:08]  *** Contents of shared directory: ***
[2025-12-15 21:35:08] total 410868
[2025-12-15 21:35:08] -rw-r--r-- 2 boinc boinc 216465901 Dec 15 17:17 ATLAS.root_0
[2025-12-15 21:35:08] -rw-r--r-- 2 boinc boinc     15847 Dec 15 17:17 start_atlas.sh
[2025-12-15 21:35:08] -rw-r--r-- 2 boinc boinc    592396 Dec 15 17:17 input.tar.gz
[2025-12-15 21:35:08] -rw------- 1 boinc boinc 201018659 Dec 15 21:33 HITS.pool.root.1
[2025-12-15 21:35:08] -rw------- 1 boinc boinc   2621440 Dec 15 21:35 result.tar.gz
21:35:09 (126252): run_atlas exited; CPU time 60424.574009
21:35:09 (126252): called boinc_finish(0)

</stderr_txt>
]]>

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