Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:28:31 (22690): wrapper (7.7.26015): starting
20:28:31 (22690): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 20:28:31] Arguments: --nthreads 8
[2025-12-14 20:28:31] Threads: 8
[2025-12-14 20:28:31] Checking for CVMFS
[2025-12-14 20:28:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 20:28:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 20:28:31] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 20:28:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 20:28:31] 2.11.2.0 2934 203524 81180 154014 2 56 10723889 20275200 1 130560 1 74217837 99.940 9856834 24426 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 20:28:31] CVMFS is ok
[2025-12-14 20:28:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 20:28:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 20:28:31] Further information can be found at the LHC@home message board.
[2025-12-14 20:28:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 20:28:31] Checking for apptainer binary...
[2025-12-14 20:28:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 20:28:31] Running /usr/bin/apptainer --version
[2025-12-14 20:28:31] apptainer version 1.3.2-1.el7
[2025-12-14 20:28:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 20:28:33] c-204-33.aglt2.org
[2025-12-14 20:28:33] apptainer works
[2025-12-14 20:28:33] Set ATHENA_PROC_NUMBER=8
[2025-12-14 20:28:33] Set ATHENA_CORE_NUMBER=8
[2025-12-14 20:28:33] Starting ATLAS job with PandaID=6929482917
[2025-12-14 20:28:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:48:08 (13285): wrapper (7.7.26015): starting
20:48:08 (13285): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 20:48:08] Arguments: --nthreads 8
[2025-12-14 20:48:08] Threads: 8
[2025-12-14 20:48:08] This job has been restarted, cleaning up previous attempt
[2025-12-14 20:48:08] Checking for CVMFS
[2025-12-14 20:48:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 20:48:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 20:48:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 20:48:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 20:48:09] 2.11.2.0 2934 203544 83768 154014 3 188 10748133 20275200 1 130560 1 74278418 99.940 9856837 24426 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 20:48:09] CVMFS is ok
[2025-12-14 20:48:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 20:48:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 20:48:09] Further information can be found at the LHC@home message board.
[2025-12-14 20:48:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 20:48:09] Checking for apptainer binary...
[2025-12-14 20:48:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 20:48:09] Running /usr/bin/apptainer --version
[2025-12-14 20:48:09] apptainer version 1.3.2-1.el7
[2025-12-14 20:48:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 20:48:10] c-204-33.aglt2.org
[2025-12-14 20:48:10] apptainer works
[2025-12-14 20:48:10] Set ATHENA_PROC_NUMBER=8
[2025-12-14 20:48:10] Set ATHENA_CORE_NUMBER=8
[2025-12-14 20:48:10] Starting ATLAS job with PandaID=6929482917
[2025-12-14 20:48:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 23:46:55]  *** The last 200 lines of the pilot log: ***
[2025-12-14 23:46:55] 2025-12-15 04:46:20,652 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 23:46:55] 2025-12-15 04:46:21,703 | INFO     | time since job start (10673s) is within the limit (174528.0s)
[2025-12-14 23:46:55] 2025-12-15 04:46:21,867 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 23:46:55] 2025-12-15 04:46:21,871 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-12-14 23:46:55] 2025-12-15 04:46:21,873 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929482917/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 23:46:55] 2025-12-15 04:46:21,874 | INFO     | extracted standard info from prmon json
[2025-12-14 23:46:55] 2025-12-15 04:46:21,874 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 23:46:55] 2025-12-15 04:46:21,874 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 23:46:55] 2025-12-15 04:46:21,875 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 23:46:55] 2025-12-15 04:46:21,875 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 23:46:55] 2025-12-15 04:46:21,879 | INFO     | fitting pss+swap vs Time
[2025-12-14 23:46:55] 2025-12-15 04:46:21,880 | INFO     | sum of square deviations: 1661871290.308579
[2025-12-14 23:46:55] 2025-12-15 04:46:21,881 | INFO     | sum of deviations: -4157279230.028576
[2025-12-14 23:46:55] 2025-12-15 04:46:21,881 | INFO     | mean x: 1765768646.0628572
[2025-12-14 23:46:55] 2025-12-15 04:46:21,881 | INFO     | mean y: 2478740.4571428574
[2025-12-14 23:46:55] 2025-12-15 04:46:21,881 | INFO     | intersect: 4419663970.21687
[2025-12-14 23:46:55] 2025-12-15 04:46:21,881 | INFO     | chi2: 2.3959315924418214
[2025-12-14 23:46:55] 2025-12-15 04:46:21,882 | INFO     | sum of square deviations: 1523462747.7882385
[2025-12-14 23:46:55] 2025-12-15 04:46:21,883 | INFO     | sum of deviations: 7246454148.411768
[2025-12-14 23:46:55] 2025-12-15 04:46:21,883 | INFO     | mean x: 1765768493.5647058
[2025-12-14 23:46:55] 2025-12-15 04:46:21,883 | INFO     | mean y: 2491010.7352941176
[2025-12-14 23:46:55] 2025-12-15 04:46:21,883 | INFO     | intersect: -8396506893.153949
[2025-12-14 23:46:55] 2025-12-15 04:46:21,884 | INFO     | chi2: 1.6312932710962509
[2025-12-14 23:46:55] 2025-12-15 04:46:21,884 | INFO     | current chi2=1.6312932710962509 (change=31.914029756011814 %)
[2025-12-14 23:46:55] 2025-12-15 04:46:21,884 | INFO     | sum of square deviations: 1392961330.2666702
[2025-12-14 23:46:55] 2025-12-15 04:46:21,885 | INFO     | sum of deviations: 7061103790.133332
[2025-12-14 23:46:55] 2025-12-15 04:46:21,885 | INFO     | mean x: 1765768341.0666666
[2025-12-14 23:46:55] 2025-12-15 04:46:21,885 | INFO     | mean y: 2490794.2606060607
[2025-12-14 23:46:55] 2025-12-15 04:46:21,886 | INFO     | intersect: -8948420659.409357
[2025-12-14 23:46:55] 2025-12-15 04:46:21,886 | INFO     | chi2: 1.632349328927728
[2025-12-14 23:46:55] 2025-12-15 04:46:21,886 | INFO     | current chi2=1.632349328927728 (change=-0.06473746016051568 %)
[2025-12-14 23:46:55] 2025-12-15 04:46:21,886 | INFO     | right removable region: 164
[2025-12-14 23:46:55] 2025-12-15 04:46:21,886 | INFO     | sum of square deviations: 1523456037.7882385
[2025-12-14 23:46:55] 2025-12-15 04:46:21,887 | INFO     | sum of deviations: -30735004538.494102
[2025-12-14 23:46:55] 2025-12-15 04:46:21,887 | INFO     | mean x: 1765768798.5647058
[2025-12-14 23:46:55] 2025-12-15 04:46:21,888 | INFO     | mean y: 2507648.317647059
[2025-12-14 23:46:55] 2025-12-15 04:46:21,888 | INFO     | intersect: 35626057453.27842
[2025-12-14 23:46:55] 2025-12-15 04:46:21,888 | INFO     | chi2: 0.9282841865419678
[2025-12-14 23:46:55] 2025-12-15 04:46:21,888 | INFO     | current chi2=0.9282841865419678 (change=61.2558142531981 %)
[2025-12-14 23:46:55] 2025-12-15 04:46:21,888 | INFO     | sum of square deviations: 1392947910.2666702
[2025-12-14 23:46:55] 2025-12-15 04:46:21,889 | INFO     | sum of deviations: -27329516578.666668
[2025-12-14 23:46:55] 2025-12-15 04:46:21,889 | INFO     | mean x: 1765768951.0666666
[2025-12-14 23:46:55] 2025-12-15 04:46:21,890 | INFO     | mean y: 2503619.696969697
[2025-12-14 23:46:55] 2025-12-15 04:46:21,890 | INFO     | intersect: 34646736520.71961
[2025-12-14 23:46:55] 2025-12-15 04:46:21,890 | INFO     | chi2: 0.9164480526458392
[2025-12-14 23:46:55] 2025-12-15 04:46:21,890 | INFO     | current chi2=0.9164480526458392 (change=1.2750549958435033 %)
[2025-12-14 23:46:55] 2025-12-15 04:46:21,890 | INFO     | left removable region: 20
[2025-12-14 23:46:55] 2025-12-15 04:46:21,890 | INFO     | sum of square deviations: 925925871.1597219
[2025-12-14 23:46:55] 2025-12-15 04:46:21,891 | INFO     | sum of deviations: -4616714739.868054
[2025-12-14 23:46:55] 2025-12-15 04:46:21,891 | INFO     | mean x: 1765768920.5763888
[2025-12-14 23:46:55] 2025-12-15 04:46:21,891 | INFO     | mean y: 2502265.215277778
[2025-12-14 23:46:55] 2025-12-15 04:46:21,892 | INFO     | intersect: 8806718301.01464
[2025-12-14 23:46:55] 2025-12-15 04:46:21,892 | INFO     | chi2: 0.06562168393676013
[2025-12-14 23:46:55] 2025-12-15 04:46:21,892 | INFO     | current memory leak: -4.99 B/s (using 144 data points, chi2=0.07)
[2025-12-14 23:46:55] 2025-12-15 04:46:21,892 | INFO     | could have reported an average CPU frequency of 2015 MHz (9 samples)
[2025-12-14 23:46:55] 2025-12-15 04:46:21,893 | INFO     | ..............................
[2025-12-14 23:46:55] 2025-12-15 04:46:21,893 | INFO     | . Timing measurements:
[2025-12-14 23:46:55] 2025-12-15 04:46:21,893 | INFO     | . get job = 0 s
[2025-12-14 23:46:55] 2025-12-15 04:46:21,893 | INFO     | . initial setup = 1 s
[2025-12-14 23:46:55] 2025-12-15 04:46:21,893 | INFO     | . payload setup = 8 s
[2025-12-14 23:46:55] 2025-12-15 04:46:21,893 | INFO     | . stage-in = 0 s
[2025-12-14 23:46:55] 2025-12-15 04:46:21,893 | INFO     | . payload execution = 10629 s
[2025-12-14 23:46:55] 2025-12-15 04:46:21,893 | INFO     | . stage-out = 2 s
[2025-12-14 23:46:55] 2025-12-15 04:46:21,893 | INFO     | . log creation = 0 s
[2025-12-14 23:46:55] 2025-12-15 04:46:21,894 | INFO     | ..............................
[2025-12-14 23:46:55] 2025-12-15 04:46:22,154 | INFO     | 
[2025-12-14 23:46:55] 2025-12-15 04:46:22,154 | INFO     | job summary report
[2025-12-14 23:46:55] 2025-12-15 04:46:22,160 | INFO     | --------------------------------------------------
[2025-12-14 23:46:55] 2025-12-15 04:46:22,160 | INFO     | PanDA job id: 6929482917
[2025-12-14 23:46:55] 2025-12-15 04:46:22,161 | INFO     | task id: 47898782
[2025-12-14 23:46:55] 2025-12-15 04:46:22,161 | INFO     | errors: (none)
[2025-12-14 23:46:55] 2025-12-15 04:46:22,161 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 23:46:55] 2025-12-15 04:46:22,161 | INFO     | pilot state: finished 
[2025-12-14 23:46:55] 2025-12-15 04:46:22,161 | INFO     | transexitcode: 0
[2025-12-14 23:46:55] 2025-12-15 04:46:22,161 | INFO     | exeerrorcode: 0
[2025-12-14 23:46:55] 2025-12-15 04:46:22,162 | INFO     | exeerrordiag: 
[2025-12-14 23:46:55] 2025-12-15 04:46:22,162 | INFO     | exitcode: 0
[2025-12-14 23:46:55] 2025-12-15 04:46:22,162 | INFO     | exitmsg: OK
[2025-12-14 23:46:55] 2025-12-15 04:46:22,162 | INFO     | cpuconsumptiontime: 76731 s
[2025-12-14 23:46:55] 2025-12-15 04:46:22,162 | INFO     | nevents: 400
[2025-12-14 23:46:55] 2025-12-15 04:46:22,162 | INFO     | neventsw: 0
[2025-12-14 23:46:55] 2025-12-15 04:46:22,163 | INFO     | pid: 23791
[2025-12-14 23:46:55] 2025-12-15 04:46:22,163 | INFO     | pgrp: 23791
[2025-12-14 23:46:55] 2025-12-15 04:46:22,163 | INFO     | corecount: 8
[2025-12-14 23:46:55] 2025-12-15 04:46:22,163 | INFO     | event service: False
[2025-12-14 23:46:55] 2025-12-15 04:46:22,163 | INFO     | sizes: {0: 2283753, 1: 2284008, 7: 2284270, 12: 2284298, 10641: 2313245, 10644: 2322243, 10647: 2322427, 10657: 2322685}
[2025-12-14 23:46:55] 2025-12-15 04:46:22,163 | INFO     | --------------------------------------------------
[2025-12-14 23:46:55] 2025-12-15 04:46:22,163 | INFO     | 
[2025-12-14 23:46:55] 2025-12-15 04:46:22,164 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 23:46:55] 2025-12-15 04:46:22,192 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,193 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,193 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,193 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,193 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,193 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,194 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,194 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,195 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,195 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,195 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,195 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,195 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,195 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,196 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 23:46:55] 2025-12-15 04:46:22,196 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,196 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 23:46:55] 2025-12-15 04:46:22,196 | INFO     | job 6929482917 has completed (purged errors)
[2025-12-14 23:46:55] 2025-12-15 04:46:22,196 | INFO     | overall cleanup function is called
[2025-12-14 23:46:55] 2025-12-15 04:46:22,818 | INFO     | PID=17345 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 23:46:55] 2025-12-15 04:46:23,204 | INFO     | --- collectZombieJob: --- 10, [23791]
[2025-12-14 23:46:55] 2025-12-15 04:46:23,205 | INFO     | zombie collector waiting for pid 23791
[2025-12-14 23:46:55] 2025-12-15 04:46:23,205 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 23:46:55] 2025-12-15 04:46:23,205 | INFO     | collected zombie processes
[2025-12-14 23:46:55] 2025-12-15 04:46:23,205 | INFO     | will attempt to kill all subprocesses of pid=23791
[2025-12-14 23:46:55] 2025-12-15 04:46:23,290 | INFO     | process IDs to be killed: [23791] (in reverse order)
[2025-12-14 23:46:55] 2025-12-15 04:46:23,353 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 23:46:55] 2025-12-15 04:46:23,354 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 23:46:55] 2025-12-15 04:46:23,357 | INFO     | did not find any defunct processes belonging to 23791
[2025-12-14 23:46:55] 2025-12-15 04:46:23,360 | INFO     | did not find any defunct processes belonging to 23791
[2025-12-14 23:46:55] 2025-12-15 04:46:23,361 | INFO     | ready for new job
[2025-12-14 23:46:55] 2025-12-15 04:46:23,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 23:46:55] 2025-12-15 04:46:23,363 | INFO     | ***************************************
[2025-12-14 23:46:55] 2025-12-15 04:46:23,363 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 23:46:55] 2025-12-15 04:46:23,363 | INFO     | ***************************************
[2025-12-14 23:46:55] 2025-12-15 04:46:23,363 | INFO     | 
[2025-12-14 23:46:55] 2025-12-15 04:46:23,364 | INFO     | architecture information:
[2025-12-14 23:46:55] 2025-12-15 04:46:23,364 | INFO     | executing command: cat /etc/os-release
[2025-12-14 23:46:55] 2025-12-15 04:46:23,383 | INFO     | cat /etc/os-release:
[2025-12-14 23:46:55] NAME="CentOS Linux"
[2025-12-14 23:46:55] VERSION="7 (Core)"
[2025-12-14 23:46:55] ID="centos"
[2025-12-14 23:46:55] ID_LIKE="rhel fedora"
[2025-12-14 23:46:55] VERSION_ID="7"
[2025-12-14 23:46:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 23:46:55] ANSI_COLOR="0;31"
[2025-12-14 23:46:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 23:46:55] HOME_URL="https://www.centos.org/"
[2025-12-14 23:46:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 23:46:55] 
[2025-12-14 23:46:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 23:46:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 23:46:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 23:46:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 23:46:55] 
[2025-12-14 23:46:55] 2025-12-15 04:46:23,383 | INFO     | ***************************************
[2025-12-14 23:46:55] 2025-12-15 04:46:23,887 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 23:46:55] 2025-12-15 04:46:23,907 | INFO     | sufficient remaining disk space (18590203904 B)
[2025-12-14 23:46:55] 2025-12-15 04:46:23,907 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 23:46:55] 2025-12-15 04:46:23,907 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 23:46:55] 2025-12-15 04:46:23,908 | INFO     | update_server=False
[2025-12-14 23:46:55] 2025-12-15 04:46:23,908 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 23:46:55] 2025-12-15 04:46:23,908 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 23:46:55] 2025-12-15 04:46:24,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 23:46:55] 2025-12-15 04:46:24,158 | INFO     | aborting loop
[2025-12-14 23:46:55] 2025-12-15 04:46:24,168 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 23:46:55] 2025-12-15 04:46:24,282 | INFO     | all data control threads have been joined
[2025-12-14 23:46:55] 2025-12-15 04:46:24,645 | INFO     | all job control threads have been joined
[2025-12-14 23:46:55] 2025-12-15 04:46:24,911 | INFO     | [job] retrieve thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:24,914 | INFO     | [job] queue monitor thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:25,071 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:25,108 | INFO     | all payload control threads have been joined
[2025-12-14 23:46:55] 2025-12-15 04:46:25,164 | INFO     | [job] job monitor thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:25,288 | INFO     | [data] control thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:25,653 | INFO     | [job] control thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:26,033 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:26,114 | INFO     | [payload] control thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:26,122 | INFO     | [data] copytool_in thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:26,140 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:26,174 | INFO     | [data] copytool_out thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:26,335 | INFO     | [payload] validate_post thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:26,339 | INFO     | [job] validate thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:26,394 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:26,427 | INFO     | [payload] failed_post thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:26,810 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 23:46:55] 2025-12-15 04:46:30,816 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 23:46:55] 2025-12-15 04:46:45,033 | INFO     | [monitor] cgroup control has ended
[2025-12-14 23:46:55] 2025-12-15 04:46:46,039 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140166961719104)>', '<ExcThread(monitor, started 140165628544768)>']
[2025-12-14 23:46:55] 2025-12-15 04:46:51,056 | INFO     | all workflow threads have been joined
[2025-12-14 23:46:55] 2025-12-15 04:46:51,056 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 23:46:55] 2025-12-15 04:46:51,057 | INFO     | traces error code: 0
[2025-12-14 23:46:55] 2025-12-15 04:46:51,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 23:46:55] 2025-12-15 04:46:55,012 | INFO     | PID=17345 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 23:46:55] 2025-12-15 04:46:55,013 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 23:46:55] 2025-12-15 04:46:55,013 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 23:46:55] 2025-12-15 04:46:55,013 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 23:46:55] 2025-12-15 04:46:55,013 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 23:46:55] 2025-12-15 04:46:55,013 | INFO     | [monitor] control thread has ended
[2025-12-14 23:46:55] 2025-12-15 04:46:55,131 [wrapper] ==== pilot stdout END ====
[2025-12-14 23:46:55] 2025-12-15 04:46:55,136 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 23:46:55] 2025-12-15 04:46:55,141 [wrapper] pilotpid: 17345
[2025-12-14 23:46:55] 2025-12-15 04:46:55,145 [wrapper] Pilot exit status: 0
[2025-12-14 23:46:55] 2025-12-15 04:46:55,163 [wrapper] pandaids: 6929482917 6929482917
[2025-12-14 23:46:55] 2025-12-15 04:46:55,208 [wrapper] cleanup supervisor_pilot 29042 17346
[2025-12-14 23:46:55] 2025-12-15 04:46:55,212 [wrapper] Test setup, not cleaning
[2025-12-14 23:46:55] 2025-12-15 04:46:55,217 [wrapper] apfmon messages muted
[2025-12-14 23:46:55] 2025-12-15 04:46:55,221 [wrapper] ==== wrapper stdout END ====
[2025-12-14 23:46:55] 2025-12-15 04:46:55,226 [wrapper] ==== wrapper stderr END ====
[2025-12-14 23:46:55]  *** Error codes and diagnostics ***
[2025-12-14 23:46:55]     "exeErrorCode": 0,
[2025-12-14 23:46:55]     "exeErrorDiag": "",
[2025-12-14 23:46:55]     "pilotErrorCode": 0,
[2025-12-14 23:46:55]     "pilotErrorDiag": "",
[2025-12-14 23:46:55]  *** Listing of results directory ***
[2025-12-14 23:46:55] total 613684
[2025-12-14 23:46:55] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas      5112 Dec 14 15:38 queuedata.json
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas    579449 Dec 14 15:38 pilot3.tar.gz
[2025-12-14 23:46:55] -rwx------ 1 boincer umatlas     36322 Dec 14 15:38 runpilot2-wrapper.sh
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas       100 Dec 14 20:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 23:46:55] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 20:28 run_atlas
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas       105 Dec 14 20:28 job.xml
[2025-12-14 23:46:55] -rw-r--r-- 3 boincer umatlas 214537915 Dec 14 20:28 EVNT.47898779._000170.pool.root.1
[2025-12-14 23:46:55] -rw-r--r-- 3 boincer umatlas 214537915 Dec 14 20:28 ATLAS.root_0
[2025-12-14 23:46:55] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 20:28 start_atlas.sh
[2025-12-14 23:46:55] drwxrwx--x 2 boincer umatlas      4096 Dec 14 20:28 shared
[2025-12-14 23:46:55] -rw-r--r-- 2 boincer umatlas    592396 Dec 14 20:28 input.tar.gz
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas         0 Dec 14 20:28 boinc_lockfile
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas      2522 Dec 14 20:48 pandaJob.out
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas        57 Dec 14 20:48 setup.sh.local
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas    991024 Dec 14 20:48 agis_schedconf.cvmfs.json
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas      5911 Dec 14 23:37 init_data.xml
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas 191654067 Dec 14 23:45 HITS.47898782._004079.pool.root.1
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas       530 Dec 14 23:45 boinc_task_state.xml
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas      1047 Dec 14 23:46 memory_monitor_summary.json
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas        96 Dec 14 23:46 pilot_heartbeat.json
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas   1516240 Dec 14 23:46 agis_ddmendpoints.agis.ALL.json
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas    407887 Dec 14 23:46 log.47898782._004079.job.log.tgz.1
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas      7841 Dec 14 23:46 heartbeat.json
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 23:46 boinc_mmap_file
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas        28 Dec 14 23:46 wrapper_checkpoint.txt
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas       745 Dec 14 23:46 pilotlog.txt
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas   1476123 Dec 14 23:46 log.47898782._004079.job.log.1
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas       357 Dec 14 23:46 output.list
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas       620 Dec 14 23:46 runtime_log
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas   1904640 Dec 14 23:46 result.tar.gz
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas       787 Dec 14 23:46 VfnMDmr27o8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVOWKDmvcUGvn.diag
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas      9428 Dec 14 23:46 runtime_log.err
[2025-12-14 23:46:55] -rw-r--r-- 1 boincer umatlas     23431 Dec 14 23:46 stderr.txt
[2025-12-14 23:46:55] HITS file was successfully produced:
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas 191654067 Dec 14 23:45 shared/HITS.pool.root.1
[2025-12-14 23:46:55]  *** Contents of shared directory: ***
[2025-12-14 23:46:55] total 399136
[2025-12-14 23:46:55] -rw-r--r-- 3 boincer umatlas 214537915 Dec 14 20:28 ATLAS.root_0
[2025-12-14 23:46:55] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 20:28 start_atlas.sh
[2025-12-14 23:46:55] -rw-r--r-- 2 boincer umatlas    592396 Dec 14 20:28 input.tar.gz
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas 191654067 Dec 14 23:45 HITS.pool.root.1
[2025-12-14 23:46:55] -rw------- 1 boincer umatlas   1904640 Dec 14 23:46 result.tar.gz
23:46:56 (13285): run_atlas exited; CPU time 76667.303687
23:46:56 (13285): called boinc_finish(0)

</stderr_txt>
]]>

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