Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:26:46 (4790): wrapper (7.7.26015): starting
06:26:46 (4790): wrapper: running run_atlas (--nthreads 8)
[2025-12-15 06:26:46] Arguments: --nthreads 8
[2025-12-15 06:26:46] Threads: 8
[2025-12-15 06:26:46] Checking for CVMFS
[2025-12-15 06:26:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 06:26:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 06:26:47] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 06:26:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 06:26:48] 2.11.2.0 15701 116245 131748 154020 3 60 23922887 25165825 4508 130560 12 38043704 99.863 22582960 1881 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-15 06:26:48] CVMFS is ok
[2025-12-15 06:26:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 06:26:48] Checking for apptainer binary...
[2025-12-15 06:26:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 06:26:48] Running /usr/bin/apptainer --version
[2025-12-15 06:26:48] apptainer version 1.3.2-1.el7
[2025-12-15 06:26:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 06:27:02] cg-vwn419.simple-grid.lan
[2025-12-15 06:27:02] apptainer works
[2025-12-15 06:27:02] Set ATHENA_PROC_NUMBER=8
[2025-12-15 06:27:02] Set ATHENA_CORE_NUMBER=8
[2025-12-15 06:27:03] Starting ATLAS job with PandaID=6929464769
[2025-12-15 06:27:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 11:33:00]  *** The last 200 lines of the pilot log: ***
[2025-12-15 11:33:00] 2025-12-15 10:32:17,406 | INFO     | monitor loop #1488: job 0:6929464769 is in state 'finished'
[2025-12-15 11:33:00] 2025-12-15 10:32:17,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 11:33:00] 2025-12-15 10:32:18,236 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-15 11:33:00] 2025-12-15 10:32:18,236 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-15 11:33:00] 2025-12-15 10:32:18,237 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6929464769/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 11:33:00] 2025-12-15 10:32:18,238 | INFO     | extracted standard info from prmon json
[2025-12-15 11:33:00] 2025-12-15 10:32:18,238 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 11:33:00] 2025-12-15 10:32:18,238 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 11:33:00] 2025-12-15 10:32:18,238 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 11:33:00] 2025-12-15 10:32:18,238 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 11:33:00] 2025-12-15 10:32:18,241 | INFO     | fitting pss+swap vs Time
[2025-12-15 11:33:00] 2025-12-15 10:32:18,241 | INFO     | sum of square deviations: 6519285025.0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,242 | INFO     | sum of deviations: 92161361390.00002
[2025-12-15 11:33:00] 2025-12-15 10:32:18,243 | INFO     | mean x: 1765785491.5
[2025-12-15 11:33:00] 2025-12-15 10:32:18,243 | INFO     | mean y: 2461582.9855072466
[2025-12-15 11:33:00] 2025-12-15 10:32:18,243 | INFO     | intersect: -24959968222.62808
[2025-12-15 11:33:00] 2025-12-15 10:32:18,243 | INFO     | chi2: 5.2483425640996435
[2025-12-15 11:33:00] 2025-12-15 10:32:18,243 | INFO     | sum of square deviations: 6171352920.0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,244 | INFO     | sum of deviations: 90239384370.0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,244 | INFO     | mean x: 1765785339.0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,244 | INFO     | mean y: 2460740.4649446495
[2025-12-15 11:33:00] 2025-12-15 10:32:18,244 | INFO     | intersect: -25817385245.742527
[2025-12-15 11:33:00] 2025-12-15 10:32:18,245 | INFO     | chi2: 5.254328232315734
[2025-12-15 11:33:00] 2025-12-15 10:32:18,245 | INFO     | current chi2=5.254328232315734 (change=-0.11404873334744323 %)
[2025-12-15 11:33:00] 2025-12-15 10:32:18,245 | INFO     | right removable region: 270
[2025-12-15 11:33:00] 2025-12-15 10:32:18,245 | INFO     | sum of square deviations: 6171352920.0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,246 | INFO     | sum of deviations: 1053132181.9999998
[2025-12-15 11:33:00] 2025-12-15 10:32:18,246 | INFO     | mean x: 1765785644.0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,246 | INFO     | mean y: 2501476.36900369
[2025-12-15 11:33:00] 2025-12-15 10:32:18,246 | INFO     | intersect: -298827213.1932835
[2025-12-15 11:33:00] 2025-12-15 10:32:18,247 | INFO     | chi2: 0.9888961403392075
[2025-12-15 11:33:00] 2025-12-15 10:32:18,247 | INFO     | current chi2=0.9888961403392075 (change=81.15793456197818 %)
[2025-12-15 11:33:00] 2025-12-15 10:32:18,247 | INFO     | sum of square deviations: 5836025702.5
[2025-12-15 11:33:00] 2025-12-15 10:32:18,248 | INFO     | sum of deviations: -31908065074.000015
[2025-12-15 11:33:00] 2025-12-15 10:32:18,248 | INFO     | mean x: 1765785796.5
[2025-12-15 11:33:00] 2025-12-15 10:32:18,248 | INFO     | mean y: 2516360.5639097746
[2025-12-15 11:33:00] 2025-12-15 10:32:18,248 | INFO     | intersect: 9656827526.008429
[2025-12-15 11:33:00] 2025-12-15 10:32:18,248 | INFO     | chi2: 0.18189764175259215
[2025-12-15 11:33:00] 2025-12-15 10:32:18,248 | INFO     | current chi2=0.18189764175259215 (change=81.60599133391315 %)
[2025-12-15 11:33:00] 2025-12-15 10:32:18,249 | INFO     | sum of square deviations: 5513070810.0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,250 | INFO     | sum of deviations: -31477575325.0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,250 | INFO     | mean x: 1765785949.0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,250 | INFO     | mean y: 2516133.049808429
[2025-12-15 11:33:00] 2025-12-15 10:32:18,250 | INFO     | intersect: 10084494423.01741
[2025-12-15 11:33:00] 2025-12-15 10:32:18,250 | INFO     | chi2: 0.16670161540626272
[2025-12-15 11:33:00] 2025-12-15 10:32:18,250 | INFO     | current chi2=0.16670161540626272 (change=8.354163473432106 %)
[2025-12-15 11:33:00] 2025-12-15 10:32:18,250 | INFO     | left removable region: 30
[2025-12-15 11:33:00] 2025-12-15 10:32:18,250 | INFO     | sum of square deviations: 4286517580.0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,251 | INFO     | sum of deviations: -4712620544.500001
[2025-12-15 11:33:00] 2025-12-15 10:32:18,251 | INFO     | mean x: 1765786223.5
[2025-12-15 11:33:00] 2025-12-15 10:32:18,251 | INFO     | mean y: 2502199.5458333334
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | intersect: 1943817096.4886262
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | chi2: 0.06977416630650991
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | current memory leak: -1.10 B/s (using 240 data points, chi2=0.07)
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | ..............................
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | . Timing measurements:
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | . get job = 0 s
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | . initial setup = 3 s
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | . payload setup = 140 s
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | . stage-in = 0 s
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | . payload execution = 16992 s
[2025-12-15 11:33:00] 2025-12-15 10:32:18,252 | INFO     | . stage-out = 283 s
[2025-12-15 11:33:00] 2025-12-15 10:32:18,253 | INFO     | . log creation = 0 s
[2025-12-15 11:33:00] 2025-12-15 10:32:18,253 | INFO     | ..............................
[2025-12-15 11:33:00] 2025-12-15 10:32:18,588 | INFO     | 
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | job summary report
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | --------------------------------------------------
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | PanDA job id: 6929464769
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | task id: 47898763
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | errors: (none)
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | pilot state: finished 
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | transexitcode: 0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | exeerrorcode: 0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | exeerrordiag: 
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | exitcode: 0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | exitmsg: OK
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | cpuconsumptiontime: 70656 s
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | nevents: 400
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | neventsw: 0
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | pid: 15148
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | pgrp: 15148
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | corecount: 8
[2025-12-15 11:33:00] 2025-12-15 10:32:18,589 | INFO     | event service: False
[2025-12-15 11:33:00] 2025-12-15 10:32:18,590 | INFO     | sizes: {0: 2283786, 1: 2283985, 12: 2283985, 23: 2284013, 33: 2284041, 44: 2284097, 55: 2284253, 66: 2284281, 76: 2284309, 87: 2284365, 95: 2284655, 98: 2284963, 1
[2025-12-15 11:33:00] 2025-12-15 10:32:18,590 | INFO     | --------------------------------------------------
[2025-12-15 11:33:00] 2025-12-15 10:32:18,590 | INFO     | 
[2025-12-15 11:33:00] 2025-12-15 10:32:18,590 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-12-15 11:33:00] 2025-12-15 10:32:18,603 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,604 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 11:33:00] 2025-12-15 10:32:18,605 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,605 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 11:33:00] 2025-12-15 10:32:18,605 | INFO     | job 6929464769 has completed (purged errors)
[2025-12-15 11:33:00] 2025-12-15 10:32:18,605 | INFO     | overall cleanup function is called
[2025-12-15 11:33:00] 2025-12-15 10:32:19,611 | INFO     | --- collectZombieJob: --- 10, [15148]
[2025-12-15 11:33:00] 2025-12-15 10:32:19,612 | INFO     | zombie collector waiting for pid 15148
[2025-12-15 11:33:00] 2025-12-15 10:32:19,612 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 11:33:00] 2025-12-15 10:32:19,612 | INFO     | collected zombie processes
[2025-12-15 11:33:00] 2025-12-15 10:32:19,612 | INFO     | will attempt to kill all subprocesses of pid=15148
[2025-12-15 11:33:00] 2025-12-15 10:32:19,642 | INFO     | process IDs to be killed: [15148] (in reverse order)
[2025-12-15 11:33:00] 2025-12-15 10:32:19,668 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 11:33:00] 2025-12-15 10:32:19,668 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 11:33:00] 2025-12-15 10:32:19,669 | INFO     | did not find any defunct processes belonging to 15148
[2025-12-15 11:33:00] 2025-12-15 10:32:19,670 | INFO     | did not find any defunct processes belonging to 15148
[2025-12-15 11:33:00] 2025-12-15 10:32:19,670 | INFO     | ready for new job
[2025-12-15 11:33:00] 2025-12-15 10:32:19,670 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 11:33:00] 2025-12-15 10:32:19,671 | INFO     | ***************************************
[2025-12-15 11:33:00] 2025-12-15 10:32:19,671 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 11:33:00] 2025-12-15 10:32:19,671 | INFO     | ***************************************
[2025-12-15 11:33:00] 2025-12-15 10:32:19,671 | INFO     | 
[2025-12-15 11:33:00] 2025-12-15 10:32:19,672 | INFO     | pilot is running in a VM
[2025-12-15 11:33:00] 2025-12-15 10:32:19,672 | INFO     | architecture information:
[2025-12-15 11:33:00] 2025-12-15 10:32:19,672 | INFO     | executing command: cat /etc/os-release
[2025-12-15 11:33:00] 2025-12-15 10:32:19,683 | INFO     | cat /etc/os-release:
[2025-12-15 11:33:00] NAME="CentOS Linux"
[2025-12-15 11:33:00] VERSION="7 (Core)"
[2025-12-15 11:33:00] ID="centos"
[2025-12-15 11:33:00] ID_LIKE="rhel fedora"
[2025-12-15 11:33:00] VERSION_ID="7"
[2025-12-15 11:33:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 11:33:00] ANSI_COLOR="0;31"
[2025-12-15 11:33:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 11:33:00] HOME_URL="https://www.centos.org/"
[2025-12-15 11:33:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 11:33:00] 
[2025-12-15 11:33:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 11:33:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 11:33:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 11:33:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 11:33:00] 
[2025-12-15 11:33:00] 2025-12-15 10:32:19,683 | INFO     | ***************************************
[2025-12-15 11:33:00] 2025-12-15 10:32:20,186 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-12-15 11:33:00] 2025-12-15 10:32:20,197 | INFO     | sufficient remaining disk space (497231593472 B)
[2025-12-15 11:33:00] 2025-12-15 10:32:20,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 11:33:00] 2025-12-15 10:32:20,197 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 11:33:00] 2025-12-15 10:32:20,198 | INFO     | update_server=False
[2025-12-15 11:33:00] 2025-12-15 10:32:20,198 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 11:33:00] 2025-12-15 10:32:20,198 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 11:33:00] 2025-12-15 10:32:20,198 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 11:33:00] 2025-12-15 10:32:20,507 | INFO     | all data control threads have been joined
[2025-12-15 11:33:00] 2025-12-15 10:32:20,914 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 11:33:00] 2025-12-15 10:32:20,914 | INFO     | aborting loop
[2025-12-15 11:33:00] 2025-12-15 10:32:21,203 | INFO     | [job] retrieve thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:21,203 | INFO     | [job] queue monitor thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:21,227 | INFO     | [data] copytool_in thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:21,432 | INFO     | all payload control threads have been joined
[2025-12-15 11:33:00] 2025-12-15 10:32:21,512 | INFO     | [data] control thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:21,532 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:21,565 | INFO     | [payload] failed_post thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:21,662 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:21,707 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:21,743 | INFO     | all job control threads have been joined
[2025-12-15 11:33:00] 2025-12-15 10:32:21,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 11:33:00] 2025-12-15 10:32:21,871 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:21,917 | INFO     | [job] job monitor thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:22,027 | INFO     | [job] validate thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:22,201 | INFO     | [data] copytool_out thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:22,253 | INFO     | [payload] validate_post thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:22,437 | INFO     | [payload] control thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:22,748 | INFO     | [job] control thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:25,824 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 11:33:00] 2025-12-15 10:32:49,839 | INFO     | PID=8606 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-15 11:33:00] 2025-12-15 10:32:49,839 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 11:33:00] 2025-12-15 10:32:49,839 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 11:33:00] 2025-12-15 10:32:49,839 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 11:33:00] 2025-12-15 10:32:54,251 | INFO     | [monitor] cgroup control has ended
[2025-12-15 11:33:00] 2025-12-15 10:32:55,389 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139667861776192)>', '<ExcThread(monitor, started 139667278120704)>']
[2025-12-15 11:33:00] 2025-12-15 10:32:55,870 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 11:33:00] 2025-12-15 10:32:55,870 | INFO     | [monitor] control thread has ended
[2025-12-15 11:33:00] 2025-12-15 10:33:00,415 | INFO     | all workflow threads have been joined
[2025-12-15 11:33:00] 2025-12-15 10:33:00,415 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 11:33:00] 2025-12-15 10:33:00,416 | INFO     | traces error code: 0
[2025-12-15 11:33:00] 2025-12-15 10:33:00,416 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 11:33:00] 2025-12-15 10:33:00,495 [wrapper] ==== pilot stdout END ====
[2025-12-15 11:33:00] 2025-12-15 10:33:00,497 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 11:33:00] 2025-12-15 10:33:00,499 [wrapper] pilotpid: 8606
[2025-12-15 11:33:00] 2025-12-15 10:33:00,502 [wrapper] Pilot exit status: 0
[2025-12-15 11:33:00] 2025-12-15 10:33:00,512 [wrapper] pandaids: 6929464769
[2025-12-15 11:33:00] 2025-12-15 10:33:00,528 [wrapper] cleanup supervisor_pilot 12331 8607
[2025-12-15 11:33:00] 2025-12-15 10:33:00,530 [wrapper] Test setup, not cleaning
[2025-12-15 11:33:00] 2025-12-15 10:33:00,533 [wrapper] apfmon messages muted
[2025-12-15 11:33:00] 2025-12-15 10:33:00,535 [wrapper] ==== wrapper stdout END ====
[2025-12-15 11:33:00] 2025-12-15 10:33:00,537 [wrapper] ==== wrapper stderr END ====
[2025-12-15 11:33:00]  *** Error codes and diagnostics ***
[2025-12-15 11:33:00]     "exeErrorCode": 0,
[2025-12-15 11:33:00]     "exeErrorDiag": "",
[2025-12-15 11:33:00]     "pilotErrorCode": 0,
[2025-12-15 11:33:00]     "pilotErrorDiag": "",
[2025-12-15 11:33:00]  *** Listing of results directory ***
[2025-12-15 11:33:00] total 435228
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc    579449 Dec 14 15:14 pilot3.tar.gz
[2025-12-15 11:33:00] -rwx------. 1 boinc boinc     36322 Dec 14 15:19 runpilot2-wrapper.sh
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc      5112 Dec 14 15:22 queuedata.json
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc       100 Dec 15 06:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 11:33:00] -rwxr-xr-x. 1 boinc boinc      7986 Dec 15 06:26 run_atlas
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc       105 Dec 15 06:26 job.xml
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc      6392 Dec 15 06:26 init_data.xml
[2025-12-15 11:33:00] -rw-r--r--. 2 boinc boinc 224029237 Dec 15 06:26 EVNT.47898761._000498.pool.root.1
[2025-12-15 11:33:00] -rw-r--r--. 2 boinc boinc     15847 Dec 15 06:26 start_atlas.sh
[2025-12-15 11:33:00] drwxrwx--x. 2 boinc boinc        68 Dec 15 06:26 shared
[2025-12-15 11:33:00] -rw-r--r--. 2 boinc boinc    592400 Dec 15 06:26 input.tar.gz
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc         0 Dec 15 06:26 boinc_lockfile
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc      2506 Dec 15 06:27 pandaJob.out
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc    991016 Dec 15 06:30 agis_schedconf.cvmfs.json
[2025-12-15 11:33:00] drwx------. 5 boinc boinc      4096 Dec 15 06:30 pilot3
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc 213486032 Dec 15 11:18 HITS.47898763._011198.pool.root.1
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc       531 Dec 15 11:18 boinc_task_state.xml
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc      1017 Dec 15 11:18 memory_monitor_summary.json
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc         0 Dec 15 11:20 agis_ddmendpoints.agis.ALL.json
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc    504601 Dec 15 11:22 log.47898763._011198.job.log.tgz.1
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc        95 Dec 15 11:31 pilot_heartbeat.json
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc      7778 Dec 15 11:32 heartbeat.json
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc        28 Dec 15 11:32 wrapper_checkpoint.txt
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc      8192 Dec 15 11:32 boinc_mmap_file
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc      4809 Dec 15 11:33 pilotlog.txt
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc   2384033 Dec 15 11:33 log.47898763._011198.job.log.1
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc       357 Dec 15 11:33 output.list
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc       620 Dec 15 11:33 runtime_log
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc   2908160 Dec 15 11:33 result.tar.gz
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc      8833 Dec 15 11:33 runtime_log.err
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc       656 Dec 15 11:33 0boNDmd71o8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuXRKDmTPnwum.diag
[2025-12-15 11:33:00] -rw-r--r--. 1 boinc boinc     20826 Dec 15 11:33 stderr.txt
[2025-12-15 11:33:00] HITS file was successfully produced:
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc 213486032 Dec 15 11:18 shared/HITS.pool.root.1
[2025-12-15 11:33:00]  *** Contents of shared directory: ***
[2025-12-15 11:33:00] total 430700
[2025-12-15 11:33:00] -rw-r--r--. 2 boinc boinc 224029237 Dec 15 06:26 ATLAS.root_0
[2025-12-15 11:33:00] -rw-r--r--. 2 boinc boinc     15847 Dec 15 06:26 start_atlas.sh
[2025-12-15 11:33:00] -rw-r--r--. 2 boinc boinc    592400 Dec 15 06:26 input.tar.gz
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc 213486032 Dec 15 11:18 HITS.pool.root.1
[2025-12-15 11:33:00] -rw-------. 1 boinc boinc   2908160 Dec 15 11:33 result.tar.gz
11:33:01 (4790): run_atlas exited; CPU time 70877.674585
11:33:01 (4790): called boinc_finish(0)

</stderr_txt>
]]>

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