Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:12:23 (1436587): wrapper (7.7.26015): starting
14:12:23 (1436587): wrapper: running run_atlas (--nthreads 2)
[2025-12-15 14:12:23] Arguments: --nthreads 2
[2025-12-15 14:12:23] Threads: 2
[2025-12-15 14:12:23] Checking for CVMFS
[2025-12-15 14:12:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 14:12:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 14:12:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 14:12:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 14:12:24] 2.9.2.0 925053 2754 60664 154033 2 56 35250439 36864000 0 130560 0 1368009 99.985 97030 17357 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 14:12:24] CVMFS is ok
[2025-12-15 14:12:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 14:12:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 14:12:24] Further information can be found at the LHC@home message board.
[2025-12-15 14:12:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 14:12:24] Checking for apptainer binary...
[2025-12-15 14:12:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 14:12:24] Running /usr/bin/apptainer --version
[2025-12-15 14:12:24] apptainer version 1.4.1-1.1
[2025-12-15 14:12:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 14:12:24] atlasA219
[2025-12-15 14:12:24] apptainer works
[2025-12-15 14:12:24] Set ATHENA_PROC_NUMBER=2
[2025-12-15 14:12:24] Set ATHENA_CORE_NUMBER=2
[2025-12-15 14:12:24] Starting ATLAS job with PandaID=6930755107
[2025-12-15 14:12:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 16:17:01]  *** The last 200 lines of the pilot log: ***
[2025-12-15 16:17:01] 2025-12-15 15:16:30,309 | INFO     | will attempt to kill all subprocesses of pid=1446720
[2025-12-15 16:17:01] 2025-12-15 15:16:30,344 | INFO     | process IDs to be killed: [1446720] (in reverse order)
[2025-12-15 16:17:01] 2025-12-15 15:16:30,366 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 16:17:01] 2025-12-15 15:16:30,366 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 16:17:01] 2025-12-15 15:16:30,367 | INFO     | did not find any defunct processes belonging to 1446720
[2025-12-15 16:17:01] 2025-12-15 15:16:30,368 | INFO     | did not find any defunct processes belonging to 1446720
[2025-12-15 16:17:01] 2025-12-15 15:16:30,368 | INFO     | ready for new job
[2025-12-15 16:17:01] 2025-12-15 15:16:30,368 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 16:17:01] 2025-12-15 15:16:30,368 | INFO     | ***************************************
[2025-12-15 16:17:01] 2025-12-15 15:16:30,368 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 16:17:01] 2025-12-15 15:16:30,368 | INFO     | ***************************************
[2025-12-15 16:17:01] 2025-12-15 15:16:30,368 | INFO     | 
[2025-12-15 16:17:01] 2025-12-15 15:16:30,369 | INFO     | architecture information:
[2025-12-15 16:17:01] 2025-12-15 15:16:30,369 | INFO     | executing command: cat /etc/os-release
[2025-12-15 16:17:01] 2025-12-15 15:16:30,377 | INFO     | cat /etc/os-release:
[2025-12-15 16:17:01] NAME="CentOS Linux"
[2025-12-15 16:17:01] VERSION="7 (Core)"
[2025-12-15 16:17:01] ID="centos"
[2025-12-15 16:17:01] ID_LIKE="rhel fedora"
[2025-12-15 16:17:01] VERSION_ID="7"
[2025-12-15 16:17:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 16:17:01] ANSI_COLOR="0;31"
[2025-12-15 16:17:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 16:17:01] HOME_URL="https://www.centos.org/"
[2025-12-15 16:17:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 16:17:01] 
[2025-12-15 16:17:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 16:17:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 16:17:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 16:17:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 16:17:01] 
[2025-12-15 16:17:01] 2025-12-15 15:16:30,377 | INFO     | ***************************************
[2025-12-15 16:17:01] 2025-12-15 15:16:30,881 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 16:17:01] 2025-12-15 15:16:30,893 | INFO     | sufficient remaining disk space (174966439936 B)
[2025-12-15 16:17:01] 2025-12-15 15:16:30,894 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 16:17:01] 2025-12-15 15:16:30,894 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 16:17:01] 2025-12-15 15:16:30,894 | INFO     | update_server=False
[2025-12-15 16:17:01] 2025-12-15 15:16:30,894 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 16:17:01] 2025-12-15 15:16:31,035 | INFO     | all data control threads have been joined
[2025-12-15 16:17:01] 2025-12-15 15:16:31,434 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 16:17:01] 2025-12-15 15:16:31,434 | INFO     | aborting loop
[2025-12-15 16:17:01] 2025-12-15 15:16:31,547 | INFO     | all job control threads have been joined
[2025-12-15 16:17:01] 2025-12-15 15:16:31,749 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 16:17:01] 2025-12-15 15:16:31,900 | INFO     | [job] retrieve thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:32,037 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:32,041 | INFO     | [data] control thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:32,042 | INFO     | all payload control threads have been joined
[2025-12-15 16:17:01] 2025-12-15 15:16:32,254 | INFO     | [payload] validate_post thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:32,440 | INFO     | [job] job monitor thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:32,511 | INFO     | [data] copytool_in thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:32,553 | INFO     | [job] control thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:32,577 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 16:17:01] 2025-12-15 15:16:32,860 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:33,048 | INFO     | [payload] control thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:33,310 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:33,320 | INFO     | [job] validate thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:33,325 | INFO     | [payload] failed_post thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:33,755 | INFO     | [data] copytool_out thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:33,834 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 16:17:01] 2025-12-15 15:16:34,840 | INFO     | [job] queue monitor thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:36,583 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:41,281 | INFO     | job.realtimelogging is not enabled
[2025-12-15 16:17:01] 2025-12-15 15:16:42,287 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 16:17:01] 2025-12-15 15:16:48,846 | INFO     | [monitor] cgroup control has ended
[2025-12-15 16:17:01] 2025-12-15 15:16:50,667 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140431177623360)>', '<ExcThread(monitor, started 140430817597184)>']
[2025-12-15 16:17:01] 2025-12-15 15:16:55,693 | INFO     | all workflow threads have been joined
[2025-12-15 16:17:01] 2025-12-15 15:16:55,694 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 16:17:01] 2025-12-15 15:16:55,694 | INFO     | traces error code: 0
[2025-12-15 16:17:01] 2025-12-15 15:16:55,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 16:17:01] 2025-12-15 15:17:01,669 | INFO     | PID=1440299 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 16:17:01] 2025-12-15 15:17:01,669 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 16:17:01] 2025-12-15 15:17:01,670 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 16:17:01] 2025-12-15 15:17:01,670 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 16:17:01] 2025-12-15 15:17:01,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 16:17:01] 2025-12-15 15:17:01,670 | INFO     | [monitor] control thread has ended
[2025-12-15 16:17:01] 2025-12-15 15:17:01,710 [wrapper] ==== pilot stdout END ====
[2025-12-15 16:17:01] 2025-12-15 15:17:01,713 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 16:17:01] 2025-12-15 15:17:01,715 [wrapper] pilotpid: 1440299
[2025-12-15 16:17:01] 2025-12-15 15:17:01,718 [wrapper] Pilot exit status: 0
[2025-12-15 16:17:01] 2025-12-15 15:17:01,724 [wrapper] pandaids: 6930755107
[2025-12-15 16:17:01] 2025-12-15 15:17:01,738 [wrapper] cleanup supervisor_pilot 1460697 1440300
[2025-12-15 16:17:01] 2025-12-15 15:17:01,741 [wrapper] Test setup, not cleaning
[2025-12-15 16:17:01] 2025-12-15 15:17:01,743 [wrapper] apfmon messages muted
[2025-12-15 16:17:01] 2025-12-15 15:17:01,745 [wrapper] ==== wrapper stdout END ====
[2025-12-15 16:17:01] 2025-12-15 15:17:01,747 [wrapper] ==== wrapper stderr END ====
[2025-12-15 16:17:01]  *** Error codes and diagnostics ***
[2025-12-15 16:17:01]     "exeErrorCode": 0,
[2025-12-15 16:17:01]     "exeErrorDiag": "",
[2025-12-15 16:17:01]     "pilotErrorCode": 0,
[2025-12-15 16:17:01]     "pilotErrorDiag": "",
[2025-12-15 16:17:01]  *** Listing of results directory ***
[2025-12-15 16:17:01] total 385796
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc    597923 Dec  8 08:17 pilot3.tar.gz
[2025-12-15 16:17:01] -rwx------ 1 boinc boinc     36322 Dec 14 19:56 runpilot2-wrapper.sh
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc      5112 Dec 14 19:58 queuedata.json
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc       100 Dec 15 14:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 16:17:01] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 14:12 run_atlas
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc       105 Dec 15 14:12 job.xml
[2025-12-15 16:17:01] -rw-r--r-- 2 boinc boinc 199138997 Dec 15 14:12 EVNT.47898875._000041.pool.root.1
[2025-12-15 16:17:01] -rw-r--r-- 2 boinc boinc    610536 Dec 15 14:12 input.tar.gz
[2025-12-15 16:17:01] -rw-r--r-- 2 boinc boinc     15847 Dec 15 14:12 start_atlas.sh
[2025-12-15 16:17:01] drwxrwx--x 2 boinc boinc      4096 Dec 15 14:12 shared
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc         0 Dec 15 14:12 boinc_setup_complete
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc      6208 Dec 15 14:12 init_data.xml
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc         0 Dec 15 14:12 boinc_lockfile
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc      2499 Dec 15 14:12 pandaJob.out
[2025-12-15 16:17:01] -rw------- 1 boinc boinc    991012 Dec 15 14:12 agis_schedconf.cvmfs.json
[2025-12-15 16:17:01] -rw------- 1 boinc boinc   1516240 Dec 15 14:12 agis_ddmendpoints.agis.ALL.json
[2025-12-15 16:17:01] drwx------ 7 boinc boinc      4096 Dec 15 14:12 pilot3
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc       529 Dec 15 16:15 boinc_task_state.xml
[2025-12-15 16:17:01] -rw------- 1 boinc boinc 189280624 Dec 15 16:15 HITS.47898878._002042.pool.root.1
[2025-12-15 16:17:01] -rw------- 1 boinc boinc      1015 Dec 15 16:16 memory_monitor_summary.json
[2025-12-15 16:17:01] -rw------- 1 boinc boinc    275030 Dec 15 16:16 log.47898878._002042.job.log.tgz.1
[2025-12-15 16:17:01] -rw------- 1 boinc boinc      7744 Dec 15 16:16 heartbeat.json
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc      8192 Dec 15 16:16 boinc_mmap_file
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc        27 Dec 15 16:16 wrapper_checkpoint.txt
[2025-12-15 16:17:01] -rw------- 1 boinc boinc       747 Dec 15 16:17 pilotlog.txt
[2025-12-15 16:17:01] -rw------- 1 boinc boinc        95 Dec 15 16:17 pilot_heartbeat.json
[2025-12-15 16:17:01] -rw------- 1 boinc boinc   1073318 Dec 15 16:17 log.47898878._002042.job.log.1
[2025-12-15 16:17:01] -rw------- 1 boinc boinc       357 Dec 15 16:17 output.list
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc       620 Dec 15 16:17 runtime_log
[2025-12-15 16:17:01] -rw------- 1 boinc boinc   1372160 Dec 15 16:17 result.tar.gz
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc      8912 Dec 15 16:17 runtime_log.err
[2025-12-15 16:17:01] -rw------- 1 boinc boinc       662 Dec 15 16:17 LQgLDmFS6o8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWsRKDmO1i9sm.diag
[2025-12-15 16:17:01] -rw-r--r-- 1 boinc boinc     10292 Dec 15 16:17 stderr.txt
[2025-12-15 16:17:01] HITS file was successfully produced:
[2025-12-15 16:17:01] -rw------- 1 boinc boinc 189280624 Dec 15 16:15 shared/HITS.pool.root.1
[2025-12-15 16:17:01]  *** Contents of shared directory: ***
[2025-12-15 16:17:01] total 381280
[2025-12-15 16:17:01] -rw-r--r-- 2 boinc boinc 199138997 Dec 15 14:12 ATLAS.root_0
[2025-12-15 16:17:01] -rw-r--r-- 2 boinc boinc    610536 Dec 15 14:12 input.tar.gz
[2025-12-15 16:17:01] -rw-r--r-- 2 boinc boinc     15847 Dec 15 14:12 start_atlas.sh
[2025-12-15 16:17:01] -rw------- 1 boinc boinc 189280624 Dec 15 16:15 HITS.pool.root.1
[2025-12-15 16:17:01] -rw------- 1 boinc boinc   1372160 Dec 15 16:17 result.tar.gz
16:17:03 (1436587): run_atlas exited; CPU time 14397.171717
16:17:03 (1436587): called boinc_finish(0)

</stderr_txt>
]]>

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