Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:41:04 (26843): wrapper (7.7.26015): starting
04:41:04 (26843): wrapper: running run_atlas (--nthreads 8)
[2025-12-15 04:41:04] Arguments: --nthreads 8
[2025-12-15 04:41:04] Threads: 8
[2025-12-15 04:41:04] Checking for CVMFS
[2025-12-15 04:41:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 04:41:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 04:41:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 04:41:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 04:41:07] 2.11.2.0 1415 111022 144132 154017 1 155 13298964 25165824 4256 130560 313 34922036 99.824 25730530 1827 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-15 04:41:07] CVMFS is ok
[2025-12-15 04:41:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 04:41:07] Checking for apptainer binary...
[2025-12-15 04:41:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 04:41:07] Running /usr/bin/apptainer --version
[2025-12-15 04:41:07] apptainer version 1.3.2-1.el7
[2025-12-15 04:41:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 04:41:28] cg-vwn377.simple-grid.lan
[2025-12-15 04:41:28] apptainer works
[2025-12-15 04:41:28] Set ATHENA_PROC_NUMBER=8
[2025-12-15 04:41:28] Set ATHENA_CORE_NUMBER=8
[2025-12-15 04:41:28] Starting ATLAS job with PandaID=6929465127
[2025-12-15 04:41:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 10:52:26]  *** The last 200 lines of the pilot log: ***
[2025-12-15 10:52:26] 2025-12-15 09:51:41,973 | INFO     | PID=30628 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-15 10:52:26] 2025-12-15 09:51:42,974 | INFO     | time since job start (22081s) is within the limit (174528.0s)
[2025-12-15 10:52:26] 2025-12-15 09:51:42,982 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-15 10:52:26] 2025-12-15 09:51:42,983 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-15 10:52:26] 2025-12-15 09:51:42,985 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6929465127/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 10:52:26] 2025-12-15 09:51:42,985 | INFO     | extracted standard info from prmon json
[2025-12-15 10:52:26] 2025-12-15 09:51:42,986 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 10:52:26] 2025-12-15 09:51:42,986 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 10:52:26] 2025-12-15 09:51:42,986 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 10:52:26] 2025-12-15 09:51:42,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 10:52:26] 2025-12-15 09:51:42,994 | INFO     | fitting pss+swap vs Time
[2025-12-15 10:52:26] 2025-12-15 09:51:42,994 | INFO     | sum of square deviations: 13408995600.0
[2025-12-15 10:52:26] 2025-12-15 09:51:42,999 | INFO     | sum of deviations: 1797371648.9999886
[2025-12-15 10:52:26] 2025-12-15 09:51:42,999 | INFO     | mean x: 1765780957.0
[2025-12-15 10:52:26] 2025-12-15 09:51:42,999 | INFO     | mean y: 2498697.772079772
[2025-12-15 10:52:26] 2025-12-15 09:51:42,999 | INFO     | intersect: -234190516.3295244
[2025-12-15 10:52:26] 2025-12-15 09:51:43,000 | INFO     | chi2: 2.35194217108421
[2025-12-15 10:52:26] 2025-12-15 09:51:43,000 | INFO     | sum of square deviations: 12844082682.5
[2025-12-15 10:52:26] 2025-12-15 09:51:43,004 | INFO     | sum of deviations: 24786943770.5
[2025-12-15 10:52:26] 2025-12-15 09:51:43,005 | INFO     | mean x: 1765780804.5
[2025-12-15 10:52:26] 2025-12-15 09:51:43,005 | INFO     | mean y: 2504831.2398843933
[2025-12-15 10:52:26] 2025-12-15 09:51:43,005 | INFO     | intersect: -3405158494.674691
[2025-12-15 10:52:26] 2025-12-15 09:51:43,006 | INFO     | chi2: 1.5843400822889864
[2025-12-15 10:52:26] 2025-12-15 09:51:43,006 | INFO     | current chi2=1.5843400822889864 (change=32.636945679721826 %)
[2025-12-15 10:52:26] 2025-12-15 09:51:43,006 | INFO     | sum of square deviations: 12295263090.0
[2025-12-15 10:52:26] 2025-12-15 09:51:43,010 | INFO     | sum of deviations: 24102997649.000004
[2025-12-15 10:52:26] 2025-12-15 09:51:43,011 | INFO     | mean x: 1765780652.0
[2025-12-15 10:52:26] 2025-12-15 09:51:43,011 | INFO     | mean y: 2504641.1818181816
[2025-12-15 10:52:26] 2025-12-15 09:51:43,011 | INFO     | intersect: -3459040393.8667727
[2025-12-15 10:52:26] 2025-12-15 09:51:43,012 | INFO     | chi2: 1.584560279601663
[2025-12-15 10:52:26] 2025-12-15 09:51:43,012 | INFO     | current chi2=1.584560279601663 (change=-0.013898361541064925 %)
[2025-12-15 10:52:26] 2025-12-15 09:51:43,012 | INFO     | right removable region: 340
[2025-12-15 10:52:26] 2025-12-15 09:51:43,013 | INFO     | sum of square deviations: 12844082682.5
[2025-12-15 10:52:26] 2025-12-15 09:51:43,017 | INFO     | sum of deviations: -51193197353.49998
[2025-12-15 10:52:26] 2025-12-15 09:51:43,017 | INFO     | mean x: 1765781109.5
[2025-12-15 10:52:26] 2025-12-15 09:51:43,017 | INFO     | mean y: 2512909.1358381505
[2025-12-15 10:52:26] 2025-12-15 09:51:43,017 | INFO     | intersect: 7040460503.858171
[2025-12-15 10:52:26] 2025-12-15 09:51:43,018 | INFO     | chi2: 0.9403409048816741
[2025-12-15 10:52:26] 2025-12-15 09:51:43,018 | INFO     | current chi2=0.9403409048816741 (change=60.018536321061376 %)
[2025-12-15 10:52:26] 2025-12-15 09:51:43,018 | INFO     | sum of square deviations: 12295263090.0
[2025-12-15 10:52:26] 2025-12-15 09:51:43,022 | INFO     | sum of deviations: -47184991694.0
[2025-12-15 10:52:26] 2025-12-15 09:51:43,022 | INFO     | mean x: 1765781262.0
[2025-12-15 10:52:26] 2025-12-15 09:51:43,023 | INFO     | mean y: 2511780.401759531
[2025-12-15 10:52:26] 2025-12-15 09:51:43,023 | INFO     | intersect: 6778973054.228055
[2025-12-15 10:52:26] 2025-12-15 09:51:43,023 | INFO     | chi2: 0.9237637591333315
[2025-12-15 10:52:26] 2025-12-15 09:51:43,023 | INFO     | current chi2=0.9237637591333315 (change=1.7628868065064682 %)
[2025-12-15 10:52:26] 2025-12-15 09:51:43,024 | INFO     | left removable region: 20
[2025-12-15 10:52:26] 2025-12-15 09:51:43,024 | INFO     | sum of square deviations: 10160711440.0
[2025-12-15 10:52:26] 2025-12-15 09:51:43,028 | INFO     | sum of deviations: -1124914054.0000012
[2025-12-15 10:52:26] 2025-12-15 09:51:43,028 | INFO     | mean x: 1765781231.5
[2025-12-15 10:52:26] 2025-12-15 09:51:43,028 | INFO     | mean y: 2511149.925
[2025-12-15 10:52:26] 2025-12-15 09:51:43,028 | INFO     | intersect: 198004559.5482714
[2025-12-15 10:52:26] 2025-12-15 09:51:43,029 | INFO     | chi2: 0.06802064795790415
[2025-12-15 10:52:26] 2025-12-15 09:51:43,029 | INFO     | current memory leak: -0.11 B/s (using 320 data points, chi2=0.07)
[2025-12-15 10:52:26] 2025-12-15 09:51:43,030 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2025-12-15 10:52:26] 2025-12-15 09:51:43,030 | INFO     | ..............................
[2025-12-15 10:52:26] 2025-12-15 09:51:43,030 | INFO     | . Timing measurements:
[2025-12-15 10:52:26] 2025-12-15 09:51:43,030 | INFO     | . get job = 0 s
[2025-12-15 10:52:26] 2025-12-15 09:51:43,030 | INFO     | . initial setup = 1 s
[2025-12-15 10:52:26] 2025-12-15 09:51:43,031 | INFO     | . payload setup = 9 s
[2025-12-15 10:52:26] 2025-12-15 09:51:43,031 | INFO     | . stage-in = 0 s
[2025-12-15 10:52:26] 2025-12-15 09:51:43,031 | INFO     | . payload execution = 21387 s
[2025-12-15 10:52:26] 2025-12-15 09:51:43,031 | INFO     | . stage-out = 643 s
[2025-12-15 10:52:26] 2025-12-15 09:51:43,031 | INFO     | . log creation = 0 s
[2025-12-15 10:52:26] 2025-12-15 09:51:43,031 | INFO     | ..............................
[2025-12-15 10:52:26] 2025-12-15 09:51:43,145 | INFO     | 
[2025-12-15 10:52:26] 2025-12-15 09:51:43,146 | INFO     | job summary report
[2025-12-15 10:52:26] 2025-12-15 09:51:43,146 | INFO     | --------------------------------------------------
[2025-12-15 10:52:26] 2025-12-15 09:51:43,146 | INFO     | PanDA job id: 6929465127
[2025-12-15 10:52:26] 2025-12-15 09:51:43,146 | INFO     | task id: 47898763
[2025-12-15 10:52:26] 2025-12-15 09:51:43,146 | INFO     | errors: (none)
[2025-12-15 10:52:26] 2025-12-15 09:51:43,146 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 10:52:26] 2025-12-15 09:51:43,147 | INFO     | pilot state: finished 
[2025-12-15 10:52:26] 2025-12-15 09:51:43,147 | INFO     | transexitcode: 0
[2025-12-15 10:52:26] 2025-12-15 09:51:43,147 | INFO     | exeerrorcode: 0
[2025-12-15 10:52:26] 2025-12-15 09:51:43,147 | INFO     | exeerrordiag: 
[2025-12-15 10:52:26] 2025-12-15 09:51:43,147 | INFO     | exitcode: 0
[2025-12-15 10:52:26] 2025-12-15 09:51:43,147 | INFO     | exitmsg: OK
[2025-12-15 10:52:26] 2025-12-15 09:51:43,147 | INFO     | cpuconsumptiontime: 80305 s
[2025-12-15 10:52:26] 2025-12-15 09:51:43,147 | INFO     | nevents: 400
[2025-12-15 10:52:26] 2025-12-15 09:51:43,147 | INFO     | neventsw: 0
[2025-12-15 10:52:26] 2025-12-15 09:51:43,147 | INFO     | pid: 4786
[2025-12-15 10:52:26] 2025-12-15 09:51:43,148 | INFO     | pgrp: 4786
[2025-12-15 10:52:26] 2025-12-15 09:51:43,148 | INFO     | corecount: 8
[2025-12-15 10:52:26] 2025-12-15 09:51:43,148 | INFO     | event service: False
[2025-12-15 10:52:26] 2025-12-15 09:51:43,148 | INFO     | sizes: {0: 2283956, 11: 2283956, 13: 2284246, 22: 2284302, 21400: 2317588, 21401: 2317587, 22045: 2325417, 22048: 2325473, 22053: 2325497}
[2025-12-15 10:52:26] 2025-12-15 09:51:43,148 | INFO     | --------------------------------------------------
[2025-12-15 10:52:26] 2025-12-15 09:51:43,148 | INFO     | 
[2025-12-15 10:52:26] 2025-12-15 09:51:43,148 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-12-15 10:52:26] 2025-12-15 09:51:43,179 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,179 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,179 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,179 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,180 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,180 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,180 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,180 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,180 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,180 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,180 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,180 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,181 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,181 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,181 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,181 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,181 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 10:52:26] 2025-12-15 09:51:43,181 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,181 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 10:52:26] 2025-12-15 09:51:43,181 | INFO     | job 6929465127 has completed (purged errors)
[2025-12-15 10:52:26] 2025-12-15 09:51:43,182 | INFO     | overall cleanup function is called
[2025-12-15 10:52:26] 2025-12-15 09:51:44,190 | INFO     | --- collectZombieJob: --- 10, [4786]
[2025-12-15 10:52:26] 2025-12-15 09:51:44,190 | INFO     | zombie collector waiting for pid 4786
[2025-12-15 10:52:26] 2025-12-15 09:51:44,190 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 10:52:26] 2025-12-15 09:51:44,190 | INFO     | collected zombie processes
[2025-12-15 10:52:26] 2025-12-15 09:51:44,191 | INFO     | will attempt to kill all subprocesses of pid=4786
[2025-12-15 10:52:26] 2025-12-15 09:51:44,255 | INFO     | process IDs to be killed: [4786] (in reverse order)
[2025-12-15 10:52:26] 2025-12-15 09:51:44,316 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 10:52:26] 2025-12-15 09:51:44,316 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 10:52:26] 2025-12-15 09:51:44,318 | INFO     | did not find any defunct processes belonging to 4786
[2025-12-15 10:52:26] 2025-12-15 09:51:44,320 | INFO     | did not find any defunct processes belonging to 4786
[2025-12-15 10:52:26] 2025-12-15 09:51:44,320 | INFO     | ready for new job
[2025-12-15 10:52:26] 2025-12-15 09:51:44,320 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 10:52:26] 2025-12-15 09:51:44,323 | INFO     | ***************************************
[2025-12-15 10:52:26] 2025-12-15 09:51:44,323 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 10:52:26] 2025-12-15 09:51:44,323 | INFO     | ***************************************
[2025-12-15 10:52:26] 2025-12-15 09:51:44,323 | INFO     | 
[2025-12-15 10:52:26] 2025-12-15 09:51:44,324 | INFO     | pilot is running in a VM
[2025-12-15 10:52:26] 2025-12-15 09:51:44,324 | INFO     | architecture information:
[2025-12-15 10:52:26] 2025-12-15 09:51:44,325 | INFO     | executing command: cat /etc/os-release
[2025-12-15 10:52:26] 2025-12-15 09:51:44,351 | INFO     | cat /etc/os-release:
[2025-12-15 10:52:26] NAME="CentOS Linux"
[2025-12-15 10:52:26] VERSION="7 (Core)"
[2025-12-15 10:52:26] ID="centos"
[2025-12-15 10:52:26] ID_LIKE="rhel fedora"
[2025-12-15 10:52:26] VERSION_ID="7"
[2025-12-15 10:52:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 10:52:26] ANSI_COLOR="0;31"
[2025-12-15 10:52:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 10:52:26] HOME_URL="https://www.centos.org/"
[2025-12-15 10:52:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 10:52:26] 
[2025-12-15 10:52:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 10:52:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 10:52:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 10:52:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 10:52:26] 
[2025-12-15 10:52:26] 2025-12-15 09:51:44,351 | INFO     | ***************************************
[2025-12-15 10:52:26] 2025-12-15 09:51:44,854 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-12-15 10:52:26] 2025-12-15 09:51:44,876 | INFO     | sufficient remaining disk space (498171117568 B)
[2025-12-15 10:52:26] 2025-12-15 09:51:44,876 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 10:52:26] 2025-12-15 09:51:44,876 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 10:52:26] 2025-12-15 09:51:44,876 | INFO     | update_server=False
[2025-12-15 10:52:26] 2025-12-15 09:51:44,877 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 10:52:26] 2025-12-15 09:51:44,877 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-15 10:52:26] 2025-12-15 09:51:44,877 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 10:52:26] 2025-12-15 09:51:44,878 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 10:52:26] 2025-12-15 09:51:44,878 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 10:52:26] 2025-12-15 09:51:44,878 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 10:52:26] 2025-12-15 09:51:44,879 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 10:52:26] 2025-12-15 09:51:44,879 | INFO     | aborting loop
[2025-12-15 10:52:26] 2025-12-15 09:51:44,934 | INFO     | all job control threads have been joined
[2025-12-15 10:52:26] 2025-12-15 09:51:45,173 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 10:52:26] 2025-12-15 09:51:45,454 | INFO     | all data control threads have been joined
[2025-12-15 10:52:26] 2025-12-15 09:51:45,684 | INFO     | all payload control threads have been joined
[2025-12-15 10:52:26] 2025-12-15 09:51:45,882 | INFO     | [job] retrieve thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:45,884 | INFO     | [job] queue monitor thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:45,885 | INFO     | [job] job monitor thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:45,939 | INFO     | [job] control thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:45,965 | INFO     | [payload] failed_post thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:46,460 | INFO     | [data] control thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:46,670 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:46,676 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:46,677 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:46,690 | INFO     | [payload] control thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:46,827 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:46,874 | INFO     | [job] validate thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:47,037 | INFO     | [data] copytool_in thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:47,179 | INFO     | [data] copytool_out thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:47,384 | INFO     | [payload] validate_post thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:51:48,017 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 10:52:26] 2025-12-15 09:51:52,023 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 10:52:26] 2025-12-15 09:52:18,917 | INFO     | [monitor] cgroup control has ended
[2025-12-15 10:52:26] 2025-12-15 09:52:20,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140234664720192)>', '<ExcThread(monitor, started 140234197018368)>']
[2025-12-15 10:52:26] 2025-12-15 09:52:21,071 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 10:52:26] 2025-12-15 09:52:21,071 | INFO     | [monitor] control thread has ended
[2025-12-15 10:52:26] 2025-12-15 09:52:25,691 | INFO     | all workflow threads have been joined
[2025-12-15 10:52:26] 2025-12-15 09:52:25,691 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 10:52:26] 2025-12-15 09:52:25,692 | INFO     | traces error code: 0
[2025-12-15 10:52:26] 2025-12-15 09:52:25,692 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 10:52:26] 2025-12-15 09:52:25,839 [wrapper] ==== pilot stdout END ====
[2025-12-15 10:52:26] 2025-12-15 09:52:25,843 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 10:52:26] 2025-12-15 09:52:25,848 [wrapper] pilotpid: 30628
[2025-12-15 10:52:26] 2025-12-15 09:52:25,853 [wrapper] Pilot exit status: 0
[2025-12-15 10:52:26] 2025-12-15 09:52:25,873 [wrapper] pandaids: 6929465127
[2025-12-15 10:52:26] 2025-12-15 09:52:25,907 [wrapper] cleanup supervisor_pilot  2336 30629
[2025-12-15 10:52:26] 2025-12-15 09:52:25,913 [wrapper] Test setup, not cleaning
[2025-12-15 10:52:26] 2025-12-15 09:52:25,922 [wrapper] apfmon messages muted
[2025-12-15 10:52:26] 2025-12-15 09:52:25,926 [wrapper] ==== wrapper stdout END ====
[2025-12-15 10:52:26] 2025-12-15 09:52:25,930 [wrapper] ==== wrapper stderr END ====
[2025-12-15 10:52:26]  *** Error codes and diagnostics ***
[2025-12-15 10:52:26]     "exeErrorCode": 0,
[2025-12-15 10:52:26]     "exeErrorDiag": "",
[2025-12-15 10:52:26]     "pilotErrorCode": 0,
[2025-12-15 10:52:26]     "pilotErrorDiag": "",
[2025-12-15 10:52:26]  *** Listing of results directory ***
[2025-12-15 10:52:26] total 445220
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc      5112 Dec 14 19:53 queuedata.json
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc    579449 Dec 14 19:53 pilot3.tar.gz
[2025-12-15 10:52:26] -rwx------. 1 boinc boinc     36322 Dec 14 19:55 runpilot2-wrapper.sh
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc       100 Dec 15 04:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 10:52:26] -rwxr-xr-x. 1 boinc boinc      7986 Dec 15 04:41 run_atlas
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc       105 Dec 15 04:41 job.xml
[2025-12-15 10:52:26] -rw-r--r--. 2 boinc boinc 224139442 Dec 15 04:41 EVNT.47898761._000512.pool.root.1
[2025-12-15 10:52:26] -rw-r--r--. 2 boinc boinc     15847 Dec 15 04:41 start_atlas.sh
[2025-12-15 10:52:26] drwxrwx--x. 2 boinc boinc        68 Dec 15 04:41 shared
[2025-12-15 10:52:26] -rw-r--r--. 2 boinc boinc    592402 Dec 15 04:41 input.tar.gz
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc      6392 Dec 15 04:41 init_data.xml
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc         0 Dec 15 04:41 boinc_lockfile
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc      2506 Dec 15 04:41 pandaJob.out
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc    991016 Dec 15 04:43 agis_schedconf.cvmfs.json
[2025-12-15 10:52:26] drwx------. 5 boinc boinc      4096 Dec 15 04:43 pilot3
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc 222417927 Dec 15 10:40 HITS.47898763._011547.pool.root.1
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc       531 Dec 15 10:40 boinc_task_state.xml
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc      1019 Dec 15 10:40 memory_monitor_summary.json
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc         0 Dec 15 10:42 agis_ddmendpoints.agis.ALL.json
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc    567705 Dec 15 10:50 log.47898763._011547.job.log.tgz.1
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc        95 Dec 15 10:51 pilot_heartbeat.json
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc      7776 Dec 15 10:51 heartbeat.json
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc      8192 Dec 15 10:51 boinc_mmap_file
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc        28 Dec 15 10:51 wrapper_checkpoint.txt
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc      4615 Dec 15 10:52 pilotlog.txt
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc   2918138 Dec 15 10:52 log.47898763._011547.job.log.1
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc       357 Dec 15 10:52 output.list
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc       620 Dec 15 10:52 runtime_log
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc   3502080 Dec 15 10:52 result.tar.gz
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc      8817 Dec 15 10:52 runtime_log.err
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc       657 Dec 15 10:52 AFOKDmyQ6o8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3oRKDmRKUYvn.diag
[2025-12-15 10:52:26] -rw-r--r--. 1 boinc boinc     20798 Dec 15 10:52 stderr.txt
[2025-12-15 10:52:26] HITS file was successfully produced:
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc 222417927 Dec 15 10:40 shared/HITS.pool.root.1
[2025-12-15 10:52:26]  *** Contents of shared directory: ***
[2025-12-15 10:52:26] total 440112
[2025-12-15 10:52:26] -rw-r--r--. 2 boinc boinc 224139442 Dec 15 04:41 ATLAS.root_0
[2025-12-15 10:52:26] -rw-r--r--. 2 boinc boinc     15847 Dec 15 04:41 start_atlas.sh
[2025-12-15 10:52:26] -rw-r--r--. 2 boinc boinc    592402 Dec 15 04:41 input.tar.gz
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc 222417927 Dec 15 10:40 HITS.pool.root.1
[2025-12-15 10:52:26] -rw-------. 1 boinc boinc   3502080 Dec 15 10:52 result.tar.gz
10:52:27 (26843): run_atlas exited; CPU time 80597.622507
10:52:27 (26843): called boinc_finish(0)

</stderr_txt>
]]>

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