Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:03:23 (2898737): wrapper (7.7.26015): starting
23:03:23 (2898737): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 23:03:23] Arguments: --nthreads 4
[2025-12-14 23:03:23] Threads: 4
[2025-12-14 23:03:23] Checking for CVMFS
[2025-12-14 23:03:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 23:03:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 23:03:23] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 23:03:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 23:03:23] 2.9.2.0 2571167 97 64100 154008 3 186 19290501 36864001 0 130560 0 867915 100.000 1351 139 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 23:03:23] CVMFS is ok
[2025-12-14 23:03:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 23:03:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 23:03:23] Further information can be found at the LHC@home message board.
[2025-12-14 23:03:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 23:03:23] Checking for apptainer binary...
[2025-12-14 23:03:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 23:03:23] Running /usr/bin/apptainer --version
[2025-12-14 23:03:23] apptainer version 1.4.1-1.1
[2025-12-14 23:03:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 23:03:23] thA325
[2025-12-14 23:03:23] apptainer works
[2025-12-14 23:03:23] Set ATHENA_PROC_NUMBER=4
[2025-12-14 23:03:23] Set ATHENA_CORE_NUMBER=4
[2025-12-14 23:03:23] Starting ATLAS job with PandaID=6929431976
[2025-12-14 23:03:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 23:07:39]  *** The last 200 lines of the pilot log: ***
[2025-12-14 23:07:39] 2025-12-14 22:06:35,843 | INFO     | aborting loop
[2025-12-14 23:07:39] 2025-12-14 22:06:36,459 | INFO     | all data control threads have been joined
[2025-12-14 23:07:39] 2025-12-14 22:06:36,474 | INFO     | all job control threads have been joined
[2025-12-14 23:07:39] 2025-12-14 22:06:36,640 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 23:07:39] 2025-12-14 22:06:36,657 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 23:07:39] 2025-12-14 22:06:36,849 | INFO     | [job] retrieve thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:36,849 | INFO     | [job] queue monitor thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:36,849 | INFO     | [job] job monitor thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:36,925 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:37,172 | INFO     | [payload] validate_post thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:37,177 | INFO     | [data] copytool_in thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:37,287 | INFO     | all payload control threads have been joined
[2025-12-14 23:07:39] 2025-12-14 22:06:37,465 | INFO     | [data] control thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:37,480 | INFO     | [job] control thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:37,932 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:38,000 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:38,253 | INFO     | [job] validate thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:38,293 | INFO     | [payload] control thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:38,309 | INFO     | [payload] failed_post thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:38,349 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:38,663 | INFO     | [data] copytool_out thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:06:40,647 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 23:07:39] 2025-12-14 22:07:06,854 | INFO     | PID=2902528 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 23:07:39] 2025-12-14 22:07:06,855 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 23:07:39] 2025-12-14 22:07:06,855 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 23:07:39] 2025-12-14 22:07:06,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 23:07:39] 2025-12-14 22:07:32,119 | INFO     | [monitor] cgroup control has ended
[2025-12-14 23:07:39] 2025-12-14 22:07:34,165 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139634600511296)>', '<ExcThread(monitor, started 139633790797568)>']
[2025-12-14 23:07:39] 2025-12-14 22:07:35,005 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 23:07:39] 2025-12-14 22:07:35,005 | INFO     | [monitor] control thread has ended
[2025-12-14 23:07:39] 2025-12-14 22:07:39,191 | INFO     | all workflow threads have been joined
[2025-12-14 23:07:39] 2025-12-14 22:07:39,192 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 23:07:39] 2025-12-14 22:07:39,192 | INFO     | traces error code: 0
[2025-12-14 23:07:39] 2025-12-14 22:07:39,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 23:07:39] 2025-12-14 22:07:39,257 [wrapper] ==== pilot stdout END ====
[2025-12-14 23:07:39] 2025-12-14 22:07:39,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 23:07:39] 2025-12-14 22:07:39,264 [wrapper] pilotpid: 2902528
[2025-12-14 23:07:39] 2025-12-14 22:07:39,268 [wrapper] Pilot exit status: 0
[2025-12-14 23:07:39] 2025-12-14 22:07:39,279 [wrapper] pandaids: 6929431976
[2025-12-14 23:07:39] 2025-12-14 22:07:39,301 [wrapper] cleanup supervisor_pilot 2902534 2902529
[2025-12-14 23:07:39] 2025-12-14 22:07:39,305 [wrapper] Test setup, not cleaning
[2025-12-14 23:07:39] 2025-12-14 22:07:39,308 [wrapper] apfmon messages muted
[2025-12-14 23:07:39] 2025-12-14 22:07:39,312 [wrapper] ==== wrapper stdout END ====
[2025-12-14 23:07:39] 2025-12-14 22:07:39,315 [wrapper] ==== wrapper stderr END ====
[2025-12-14 23:07:39]  *** Error codes and diagnostics ***
[2025-12-14 23:07:39]     "exeErrorCode": 65,
[2025-12-14 23:07:39]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-14 23:07:39]     "pilotErrorCode": 1305,
[2025-12-14 23:07:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-14 23:07:39]  *** Listing of results directory ***
[2025-12-14 23:07:39] total 222376
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc    579449 Dec 14 05:46 pilot3.tar.gz
[2025-12-14 23:07:39] -rwx------ 1 boinc boinc     36322 Dec 14 05:47 runpilot2-wrapper.sh
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc      5112 Dec 14 05:48 queuedata.json
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc       100 Dec 14 23:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 23:07:39] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 23:03 run_atlas
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc       105 Dec 14 23:03 job.xml
[2025-12-14 23:07:39] -rw-r--r-- 2 boinc boinc 223574877 Dec 14 23:03 EVNT.47898824._000013.pool.root.1
[2025-12-14 23:07:39] -rw-r--r-- 2 boinc boinc    592389 Dec 14 23:03 input.tar.gz
[2025-12-14 23:07:39] -rw-r--r-- 2 boinc boinc     15847 Dec 14 23:03 start_atlas.sh
[2025-12-14 23:07:39] drwxrwx--x 2 boinc boinc      4096 Dec 14 23:03 shared
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc         0 Dec 14 23:03 boinc_setup_complete
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc      6368 Dec 14 23:03 init_data.xml
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc         0 Dec 14 23:03 boinc_lockfile
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc      2511 Dec 14 23:03 pandaJob.out
[2025-12-14 23:07:39] -rw------- 1 boinc boinc    991024 Dec 14 23:03 agis_schedconf.cvmfs.json
[2025-12-14 23:07:39] -rw------- 1 boinc boinc   1516240 Dec 14 23:03 agis_ddmendpoints.agis.ALL.json
[2025-12-14 23:07:39] drwx------ 5 boinc boinc      4096 Dec 14 23:03 pilot3
[2025-12-14 23:07:39] -rw------- 1 boinc boinc       954 Dec 14 23:04 memory_monitor_summary.json
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc       523 Dec 14 23:04 boinc_task_state.xml
[2025-12-14 23:07:39] -rw------- 1 boinc boinc     33951 Dec 14 23:04 log.47898826._000317.job.log.tgz.1
[2025-12-14 23:07:39] -rw------- 1 boinc boinc        95 Dec 14 23:06 pilot_heartbeat.json
[2025-12-14 23:07:39] -rw------- 1 boinc boinc      8359 Dec 14 23:06 heartbeat.json
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc      8192 Dec 14 23:07 boinc_mmap_file
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc        23 Dec 14 23:07 wrapper_checkpoint.txt
[2025-12-14 23:07:39] -rw------- 1 boinc boinc      4752 Dec 14 23:07 pilotlog.txt
[2025-12-14 23:07:39] -rw------- 1 boinc boinc     85647 Dec 14 23:07 log.47898826._000317.job.log.1
[2025-12-14 23:07:39] -rw------- 1 boinc boinc       188 Dec 14 23:07 output.list
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc       620 Dec 14 23:07 runtime_log
[2025-12-14 23:07:39] -rw------- 1 boinc boinc    143360 Dec 14 23:07 result.tar.gz
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc      8744 Dec 14 23:07 runtime_log.err
[2025-12-14 23:07:39] -rw------- 1 boinc boinc       648 Dec 14 23:07 IeBMDmMCto8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGsUKDmNSoTnm.diag
[2025-12-14 23:07:39] -rw-r--r-- 1 boinc boinc      7157 Dec 14 23:07 stderr.txt
[2025-12-14 23:07:39] No HITS result produced
[2025-12-14 23:07:39]  *** Contents of shared directory: ***
[2025-12-14 23:07:39] total 219076
[2025-12-14 23:07:39] -rw-r--r-- 2 boinc boinc 223574877 Dec 14 23:03 ATLAS.root_0
[2025-12-14 23:07:39] -rw-r--r-- 2 boinc boinc    592389 Dec 14 23:03 input.tar.gz
[2025-12-14 23:07:39] -rw-r--r-- 2 boinc boinc     15847 Dec 14 23:03 start_atlas.sh
[2025-12-14 23:07:39] -rw------- 1 boinc boinc    143360 Dec 14 23:07 result.tar.gz
23:07:41 (2898737): run_atlas exited; CPU time 28.358374
23:07:41 (2898737): called boinc_finish(0)

</stderr_txt>
]]>

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