Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:59:19 (1608157): wrapper (7.7.26015): starting
03:59:19 (1608157): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 03:59:19] Arguments: --nthreads 4
[2025-12-16 03:59:19] Threads: 4
[2025-12-16 03:59:19] Checking for CVMFS
[2025-12-16 03:59:19] No cvmfs_config command found, will try listing directly
[2025-12-16 03:59:19] CVMFS is ok
[2025-12-16 03:59:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 03:59:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 03:59:19] Further information can be found at the LHC@home message board.
[2025-12-16 03:59:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 03:59:19] Checking for apptainer binary...
[2025-12-16 03:59:19] which: no apptainer in ((null))
[2025-12-16 03:59:19] apptainer is not installed, using version from CVMFS
[2025-12-16 03:59:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 03:59:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-12-16 03:59:19] apptainer works
[2025-12-16 03:59:19] Set ATHENA_PROC_NUMBER=4
[2025-12-16 03:59:19] Set ATHENA_CORE_NUMBER=4
[2025-12-16 03:59:19] Starting ATLAS job with PandaID=6929449384
[2025-12-16 03:59:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 07:12:25]  *** The last 200 lines of the pilot log: ***
[2025-12-16 07:12:25] 2025-12-16 05:59:01,608 | INFO     | current chi2=1.2599542397056542 (change=-0.07715437992537721 %)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,609 | INFO     | right removable region: 170
[2025-12-16 07:12:25] 2025-12-16 05:59:01,609 | INFO     | sum of square deviations: 1550429070.0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,610 | INFO     | sum of deviations: -2298091369.0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,610 | INFO     | mean x: 1765859499.0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,610 | INFO     | mean y: 2323111.7134502926
[2025-12-16 07:12:25] 2025-12-16 05:59:01,610 | INFO     | intersect: 2619731771.0586753
[2025-12-16 07:12:25] 2025-12-16 05:59:01,610 | INFO     | chi2: 0.05564050807992753
[2025-12-16 07:12:25] 2025-12-16 05:59:01,611 | INFO     | current chi2=0.05564050807992753 (change=95.58051908441274 %)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,611 | INFO     | sum of square deviations: 1418361477.5
[2025-12-16 07:12:25] 2025-12-16 05:59:01,612 | INFO     | sum of deviations: 2810498079.0000005
[2025-12-16 07:12:25] 2025-12-16 05:59:01,612 | INFO     | mean x: 1765859651.5
[2025-12-16 07:12:25] 2025-12-16 05:59:01,612 | INFO     | mean y: 2317232.5542168673
[2025-12-16 07:12:25] 2025-12-16 05:59:01,612 | INFO     | intersect: -3496752106.9995008
[2025-12-16 07:12:25] 2025-12-16 05:59:01,613 | INFO     | chi2: 0.000809608804928642
[2025-12-16 07:12:25] 2025-12-16 05:59:01,613 | INFO     | current chi2=0.000809608804928642 (change=98.54492916605714 %)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,613 | INFO     | sum of square deviations: 1294014960.0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,614 | INFO     | sum of deviations: 2131726861.9999976
[2025-12-16 07:12:25] 2025-12-16 05:59:01,614 | INFO     | mean x: 1765859804.0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,614 | INFO     | mean y: 2318062.5900621116
[2025-12-16 07:12:25] 2025-12-16 05:59:01,614 | INFO     | intersect: -2906713822.723575
[2025-12-16 07:12:25] 2025-12-16 05:59:01,615 | INFO     | chi2: 0.000478112597833735
[2025-12-16 07:12:25] 2025-12-16 05:59:01,615 | INFO     | current chi2=0.000478112597833735 (change=40.94523244767882 %)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,615 | INFO     | sum of square deviations: 1177156955.0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,616 | INFO     | sum of deviations: 1618706736.0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,616 | INFO     | mean x: 1765859956.5
[2025-12-16 07:12:25] 2025-12-16 05:59:01,616 | INFO     | mean y: 2318731.576923077
[2025-12-16 07:12:25] 2025-12-16 05:59:01,616 | INFO     | intersect: -2425912605.185826
[2025-12-16 07:12:25] 2025-12-16 05:59:01,617 | INFO     | chi2: 0.0002949376718925884
[2025-12-16 07:12:25] 2025-12-16 05:59:01,617 | INFO     | current chi2=0.0002949376718925884 (change=38.31208940552664 %)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,617 | INFO     | sum of square deviations: 1067554900.0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,618 | INFO     | sum of deviations: 1192713358.0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,618 | INFO     | mean x: 1765860109.0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,618 | INFO     | mean y: 2319323.357615894
[2025-12-16 07:12:25] 2025-12-16 05:59:01,618 | INFO     | intersect: -1970567448.426801
[2025-12-16 07:12:25] 2025-12-16 05:59:01,619 | INFO     | chi2: 0.00014916686619649382
[2025-12-16 07:12:25] 2025-12-16 05:59:01,619 | INFO     | current chi2=0.00014916686619649382 (change=49.42427488516353 %)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,619 | INFO     | sum of square deviations: 964976232.5
[2025-12-16 07:12:25] 2025-12-16 05:59:01,620 | INFO     | sum of deviations: 956313470.0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,620 | INFO     | mean x: 1765860261.5
[2025-12-16 07:12:25] 2025-12-16 05:59:01,620 | INFO     | mean y: 2319674.0410958906
[2025-12-16 07:12:25] 2025-12-16 05:59:01,620 | INFO     | intersect: -1747688147.2242558
[2025-12-16 07:12:25] 2025-12-16 05:59:01,620 | INFO     | chi2: 0.00011618550620571801
[2025-12-16 07:12:25] 2025-12-16 05:59:01,620 | INFO     | current chi2=0.00011618550620571801 (change=22.110379356854143 %)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,621 | INFO     | left removable region: 60
[2025-12-16 07:12:25] 2025-12-16 05:59:01,621 | INFO     | sum of square deviations: 412686807.5
[2025-12-16 07:12:25] 2025-12-16 05:59:01,621 | INFO     | sum of deviations: 283268475.49999994
[2025-12-16 07:12:25] 2025-12-16 05:59:01,621 | INFO     | mean x: 1765860993.5
[2025-12-16 07:12:25] 2025-12-16 05:59:01,622 | INFO     | mean y: 2320619.6636363636
[2025-12-16 07:12:25] 2025-12-16 05:59:01,622 | INFO     | intersect: -1209767439.569176
[2025-12-16 07:12:25] 2025-12-16 05:59:01,622 | INFO     | chi2: 5.987376764106742e-05
[2025-12-16 07:12:25] 2025-12-16 05:59:01,622 | INFO     | current memory leak: 0.69 B/s (using 110 data points, chi2=0.00)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,623 | INFO     | could have reported an average CPU frequency of 2668 MHz (9 samples)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,623 | INFO     | ..............................
[2025-12-16 07:12:25] 2025-12-16 05:59:01,623 | INFO     | . Timing measurements:
[2025-12-16 07:12:25] 2025-12-16 05:59:01,623 | INFO     | . get job = 0 s
[2025-12-16 07:12:25] 2025-12-16 05:59:01,623 | INFO     | . initial setup = 1 s
[2025-12-16 07:12:25] 2025-12-16 05:59:01,623 | INFO     | . payload setup = 9 s
[2025-12-16 07:12:25] 2025-12-16 05:59:01,623 | INFO     | . stage-in = 0 s
[2025-12-16 07:12:25] 2025-12-16 05:59:01,623 | INFO     | . payload execution = 10726 s
[2025-12-16 07:12:25] 2025-12-16 05:59:01,623 | INFO     | . stage-out = 0 s
[2025-12-16 07:12:25] 2025-12-16 05:59:01,623 | INFO     | . log creation = 0 s
[2025-12-16 07:12:25] 2025-12-16 05:59:01,624 | INFO     | ..............................
[2025-12-16 07:12:25] 2025-12-16 05:59:01,718 | INFO     | 
[2025-12-16 07:12:25] 2025-12-16 05:59:01,718 | INFO     | job summary report
[2025-12-16 07:12:25] 2025-12-16 05:59:01,718 | INFO     | --------------------------------------------------
[2025-12-16 07:12:25] 2025-12-16 05:59:01,718 | INFO     | PanDA job id: 6929449384
[2025-12-16 07:12:25] 2025-12-16 05:59:01,718 | INFO     | task id: 47886933
[2025-12-16 07:12:25] 2025-12-16 05:59:01,719 | INFO     | errors: (none)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,719 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 07:12:25] 2025-12-16 05:59:01,719 | INFO     | pilot state: finished 
[2025-12-16 07:12:25] 2025-12-16 05:59:01,719 | INFO     | transexitcode: 0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,719 | INFO     | exeerrorcode: 0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,719 | INFO     | exeerrordiag: 
[2025-12-16 07:12:25] 2025-12-16 05:59:01,719 | INFO     | exitcode: 0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,719 | INFO     | exitmsg: OK
[2025-12-16 07:12:25] 2025-12-16 05:59:01,719 | INFO     | cpuconsumptiontime: 41003 s
[2025-12-16 07:12:25] 2025-12-16 05:59:01,719 | INFO     | nevents: 400
[2025-12-16 07:12:25] 2025-12-16 05:59:01,719 | INFO     | neventsw: 0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,720 | INFO     | pid: 1623608
[2025-12-16 07:12:25] 2025-12-16 05:59:01,720 | INFO     | pgrp: 1623608
[2025-12-16 07:12:25] 2025-12-16 05:59:01,720 | INFO     | corecount: 4
[2025-12-16 07:12:25] 2025-12-16 05:59:01,720 | INFO     | event service: False
[2025-12-16 07:12:25] 2025-12-16 05:59:01,720 | INFO     | sizes: {0: 2283978, 7: 2284240, 11: 2284268, 10739: 2313590, 10740: 2322612, 10741: 2322668, 10749: 2323054}
[2025-12-16 07:12:25] 2025-12-16 05:59:01,720 | INFO     | --------------------------------------------------
[2025-12-16 07:12:25] 2025-12-16 05:59:01,720 | INFO     | 
[2025-12-16 07:12:25] 2025-12-16 05:59:01,720 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-12-16 07:12:25] 2025-12-16 05:59:01,747 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,748 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,748 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,748 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,748 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,748 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,748 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,748 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,748 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,748 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,749 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,749 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,749 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,749 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,749 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,749 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,749 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,749 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,749 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 07:12:25] 2025-12-16 05:59:01,750 | INFO     | job 6929449384 has completed (purged errors)
[2025-12-16 07:12:25] 2025-12-16 05:59:01,750 | INFO     | overall cleanup function is called
[2025-12-16 07:12:25] 2025-12-16 05:59:02,759 | INFO     | --- collectZombieJob: --- 10, [1623608]
[2025-12-16 07:12:25] 2025-12-16 05:59:02,762 | INFO     | zombie collector waiting for pid 1623608
[2025-12-16 07:12:25] 2025-12-16 05:59:02,762 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 07:12:25] 2025-12-16 05:59:02,762 | INFO     | collected zombie processes
[2025-12-16 07:12:25] 2025-12-16 05:59:02,762 | INFO     | will attempt to kill all subprocesses of pid=1623608
[2025-12-16 07:12:25] 2025-12-16 05:59:03,594 | INFO     | process IDs to be killed: [1623608] (in reverse order)
[2025-12-16 07:12:25] 2025-12-16 05:59:03,852 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 07:12:25] 2025-12-16 05:59:03,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 07:12:25] 2025-12-16 05:59:03,886 | INFO     | did not find any defunct processes belonging to 1623608
[2025-12-16 07:12:25] 2025-12-16 05:59:03,919 | INFO     | did not find any defunct processes belonging to 1623608
[2025-12-16 07:12:25] 2025-12-16 05:59:03,919 | INFO     | ready for new job
[2025-12-16 07:12:25] 2025-12-16 05:59:03,919 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 07:12:25] 2025-12-16 05:59:03,922 | INFO     | ***************************************
[2025-12-16 07:12:25] 2025-12-16 05:59:03,922 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 07:12:25] 2025-12-16 05:59:03,922 | INFO     | ***************************************
[2025-12-16 07:12:25] 2025-12-16 05:59:03,922 | INFO     | 
[2025-12-16 07:12:25] 2025-12-16 05:59:03,930 | INFO     | architecture information:
[2025-12-16 07:12:25] 2025-12-16 05:59:03,931 | INFO     | executing command: cat /etc/os-release
[2025-12-16 07:12:25] 2025-12-16 05:59:03,952 | INFO     | cat /etc/os-release:
[2025-12-16 07:12:25] NAME="CentOS Linux"
[2025-12-16 07:12:25] VERSION="7 (Core)"
[2025-12-16 07:12:25] ID="centos"
[2025-12-16 07:12:25] ID_LIKE="rhel fedora"
[2025-12-16 07:12:25] VERSION_ID="7"
[2025-12-16 07:12:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 07:12:25] ANSI_COLOR="0;31"
[2025-12-16 07:12:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 07:12:25] HOME_URL="https://www.centos.org/"
[2025-12-16 07:12:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 07:12:25] 
[2025-12-16 07:12:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 07:12:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 07:12:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 07:12:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 07:12:25] 
[2025-12-16 07:12:25] 2025-12-16 05:59:03,952 | INFO     | ***************************************
[2025-12-16 07:12:25] 2025-12-16 05:59:04,456 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-12-16 07:12:25] 2025-12-16 05:59:04,480 | INFO     | sufficient remaining disk space (3329539178496 B)
[2025-12-16 07:12:25] 2025-12-16 05:59:04,481 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 07:12:25] 2025-12-16 05:59:04,481 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 07:12:25] 2025-12-16 05:59:04,481 | INFO     | update_server=False
[2025-12-16 07:12:25] 2025-12-16 05:59:04,481 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 07:12:25] 2025-12-16 05:59:04,490 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 07:12:25] 2025-12-16 05:59:04,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:12:25] 2025-12-16 05:59:04,542 | INFO     | aborting loop
[2025-12-16 07:12:25] 2025-12-16 05:59:04,554 | INFO     | all job control threads have been joined
[2025-12-16 07:12:25] 2025-12-16 05:59:04,869 | INFO     | all data control threads have been joined
[2025-12-16 07:12:25] 2025-12-16 05:59:05,304 | INFO     | all payload control threads have been joined
[2025-12-16 07:12:25] 2025-12-16 05:59:05,487 | INFO     | [job] retrieve thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:05,547 | INFO     | [job] job monitor thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:05,560 | INFO     | [job] control thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:05,659 | INFO     | [payload] validate_post thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:05,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 07:12:25] 2025-12-16 05:59:05,758 | INFO     | [payload] failed_post thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:05,860 | INFO     | [data] copytool_in thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:05,874 | INFO     | [data] control thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:05,875 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:06,149 | INFO     | [job] validate thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:06,218 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:06,309 | INFO     | [payload] control thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:06,625 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:06,727 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 07:12:25] 2025-12-16 05:59:07,700 | INFO     | [data] copytool_out thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:07,729 | INFO     | [job] queue monitor thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:08,496 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:14,697 | INFO     | job.realtimelogging is not enabled
[2025-12-16 07:12:25] 2025-12-16 05:59:15,703 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 07:12:25] 2025-12-16 05:59:31,844 [wrapper] supervise_pilot (15 min periods counter: 13)
[2025-12-16 07:12:25] 2025-12-16 05:59:35,254 | INFO     | PID=1612195 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 07:12:25] 2025-12-16 05:59:35,254 | INFO     | .. there are 8 such processes running
[2025-12-16 07:12:25] 2025-12-16 05:59:35,256 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 07:12:25] 2025-12-16 05:59:35,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 07:12:25] 2025-12-16 05:59:35,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 07:12:25] 2025-12-16 05:59:51,776 | INFO     | [monitor] cgroup control has ended
[2025-12-16 07:12:25] 2025-12-16 05:59:52,399 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23417369335616)>', '<ExcThread(monitor, started 23417128445696)>']
[2025-12-16 07:12:25] 2025-12-16 05:59:53,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 07:12:25] 2025-12-16 05:59:53,346 | INFO     | [monitor] control thread has ended
[2025-12-16 07:12:25] 2025-12-16 05:59:57,424 | INFO     | all workflow threads have been joined
[2025-12-16 07:12:25] 2025-12-16 05:59:57,425 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 07:12:25] 2025-12-16 05:59:57,425 | INFO     | traces error code: 0
[2025-12-16 07:12:25] 2025-12-16 05:59:57,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 07:12:25] 2025-12-16 05:59:57,564 [wrapper] ==== pilot stdout END ====
[2025-12-16 07:12:25] 2025-12-16 05:59:57,568 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 07:12:25] 2025-12-16 05:59:57,572 [wrapper] pilotpid: 1612195
[2025-12-16 07:12:25] 2025-12-16 05:59:57,577 [wrapper] Pilot exit status: 0
[2025-12-16 07:12:25] 2025-12-16 05:59:57,593 [wrapper] pandaids: 6929449384
[2025-12-16 07:12:25] 2025-12-16 05:59:57,769 [wrapper] cleanup supervisor_pilot 2018360 1612196
[2025-12-16 07:12:25] 2025-12-16 05:59:57,773 [wrapper] Test setup, not cleaning
[2025-12-16 07:12:25] 2025-12-16 05:59:57,777 [wrapper] apfmon messages muted
[2025-12-16 07:12:25] 2025-12-16 05:59:57,781 [wrapper] ==== wrapper stdout END ====
[2025-12-16 07:12:25] 2025-12-16 05:59:57,785 [wrapper] ==== wrapper stderr END ====
[2025-12-16 07:12:25]  *** Error codes and diagnostics ***
[2025-12-16 07:12:25]     "exeErrorCode": 0,
[2025-12-16 07:12:25]     "exeErrorDiag": "",
[2025-12-16 07:12:25]     "pilotErrorCode": 0,
[2025-12-16 07:12:25]     "pilotErrorDiag": "",
[2025-12-16 07:12:25]  *** Listing of results directory ***
[2025-12-16 07:12:25] total 339196
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc    597923 Dec  8 08:17 pilot3.tar.gz
[2025-12-16 07:12:25] -rwx------ 1 boinc boinc     36322 Dec 14 12:03 runpilot2-wrapper.sh
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc      5112 Dec 14 12:03 queuedata.json
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc       100 Dec 16 03:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 07:12:25] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 03:59 run_atlas
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc       105 Dec 16 03:59 job.xml
[2025-12-16 07:12:25] -rw-r--r-- 2 boinc boinc 191611141 Dec 16 03:59 EVNT.47886929._000148.pool.root.1
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc      6691 Dec 16 03:59 init_data.xml
[2025-12-16 07:12:25] -rw-r--r-- 2 boinc boinc     15847 Dec 16 03:59 start_atlas.sh
[2025-12-16 07:12:25] drwxrwx--x 2 boinc boinc      4096 Dec 16 03:59 shared
[2025-12-16 07:12:25] -rw-r--r-- 2 boinc boinc    610542 Dec 16 03:59 input.tar.gz
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc         0 Dec 16 03:59 boinc_lockfile
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc      2514 Dec 16 03:59 pandaJob.out
[2025-12-16 07:12:25] -rw------- 1 boinc boinc    994523 Dec 16 03:59 agis_schedconf.cvmfs.json
[2025-12-16 07:12:25] -rw------- 1 boinc boinc   1516240 Dec 16 03:59 agis_ddmendpoints.agis.ALL.json
[2025-12-16 07:12:25] drwx------ 7 boinc boinc      4096 Dec 16 03:59 pilot3
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc       528 Dec 16 06:58 boinc_task_state.xml
[2025-12-16 07:12:25] -rw------- 1 boinc boinc 148076891 Dec 16 06:58 HITS.47886933._003248.pool.root.1
[2025-12-16 07:12:25] -rw------- 1 boinc boinc      1029 Dec 16 06:58 memory_monitor_summary.json
[2025-12-16 07:12:25] -rw------- 1 boinc boinc    343863 Dec 16 06:58 log.47886933._003248.job.log.tgz.1
[2025-12-16 07:12:25] -rw------- 1 boinc boinc      7787 Dec 16 06:59 heartbeat.json
[2025-12-16 07:12:25] -rw------- 1 boinc boinc        95 Dec 16 06:59 pilot_heartbeat.json
[2025-12-16 07:12:25] -rw------- 1 boinc boinc      4907 Dec 16 06:59 pilotlog.txt
[2025-12-16 07:12:25] -rw------- 1 boinc boinc   1504102 Dec 16 06:59 log.47886933._003248.job.log.1
[2025-12-16 07:12:25] -rw------- 1 boinc boinc       357 Dec 16 06:59 output.list
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc       620 Dec 16 06:59 runtime_log
[2025-12-16 07:12:25] -rw------- 1 boinc boinc   1863680 Dec 16 06:59 result.tar.gz
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc      9223 Dec 16 06:59 runtime_log.err
[2025-12-16 07:12:25] -rw------- 1 boinc boinc       666 Dec 16 06:59 VgzMDm13yo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMVVKDmF9udDo.diag
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc        26 Dec 16 07:12 wrapper_checkpoint.txt
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc      8192 Dec 16 07:12 boinc_mmap_file
[2025-12-16 07:12:25] -rw-r--r-- 1 boinc boinc     20756 Dec 16 07:12 stderr.txt
[2025-12-16 07:12:25] HITS file was successfully produced:
[2025-12-16 07:12:25] -rw------- 1 boinc boinc 148076891 Dec 16 06:58 shared/HITS.pool.root.1
[2025-12-16 07:12:25]  *** Contents of shared directory: ***
[2025-12-16 07:12:25] total 334176
[2025-12-16 07:12:25] -rw-r--r-- 2 boinc boinc 191611141 Dec 16 03:59 ATLAS.root_0
[2025-12-16 07:12:25] -rw-r--r-- 2 boinc boinc     15847 Dec 16 03:59 start_atlas.sh
[2025-12-16 07:12:25] -rw-r--r-- 2 boinc boinc    610542 Dec 16 03:59 input.tar.gz
[2025-12-16 07:12:25] -rw------- 1 boinc boinc 148076891 Dec 16 06:58 HITS.pool.root.1
[2025-12-16 07:12:25] -rw------- 1 boinc boinc   1863680 Dec 16 06:59 result.tar.gz
07:12:26 (1608157): run_atlas exited; CPU time 41774.636504
07:12:26 (1608157): called boinc_finish(0)

</stderr_txt>
]]>

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