Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:56:30 (2975776): wrapper (7.7.26015): starting
04:56:30 (2975776): wrapper: running run_atlas (--nthreads 3)
[2025-12-15 04:56:30] Arguments: --nthreads 3
[2025-12-15 04:56:30] Threads: 3
[2025-12-15 04:56:30] Checking for CVMFS
[2025-12-15 04:56:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 04:56:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 04:56:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 04:56:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 04:56:30] 2.9.2.0 2238870 2839 83448 154017 0 57 20798709 36864000 0 130560 0 1946826 99.991 98214 15691 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 04:56:30] CVMFS is ok
[2025-12-15 04:56:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 04:56:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 04:56:30] Further information can be found at the LHC@home message board.
[2025-12-15 04:56:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 04:56:30] Checking for apptainer binary...
[2025-12-15 04:56:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 04:56:30] Running /usr/bin/apptainer --version
[2025-12-15 04:56:30] apptainer version 1.4.1-1.1
[2025-12-15 04:56:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 04:56:30] magicA161a
[2025-12-15 04:56:30] apptainer works
[2025-12-15 04:56:30] Set ATHENA_PROC_NUMBER=3
[2025-12-15 04:56:30] Set ATHENA_CORE_NUMBER=3
[2025-12-15 04:56:30] Starting ATLAS job with PandaID=6929448841
[2025-12-15 04:56:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 06:19:47]  *** The last 200 lines of the pilot log: ***
[2025-12-15 06:19:47] 2025-12-15 05:19:20,555 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 06:19:47] 2025-12-15 05:19:20,555 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 06:19:47] 2025-12-15 05:19:20,555 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 06:19:47] 2025-12-15 05:19:20,555 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 06:19:47] 2025-12-15 05:19:20,555 | INFO     | job 6929448841 has completed (purged errors)
[2025-12-15 06:19:47] 2025-12-15 05:19:20,555 | INFO     | overall cleanup function is called
[2025-12-15 06:19:47] 2025-12-15 05:19:21,561 | INFO     | --- collectZombieJob: --- 10, [2985936]
[2025-12-15 06:19:47] 2025-12-15 05:19:21,562 | INFO     | zombie collector waiting for pid 2985936
[2025-12-15 06:19:47] 2025-12-15 05:19:21,562 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 06:19:47] 2025-12-15 05:19:21,562 | INFO     | collected zombie processes
[2025-12-15 06:19:47] 2025-12-15 05:19:21,562 | INFO     | will attempt to kill all subprocesses of pid=2985936
[2025-12-15 06:19:47] 2025-12-15 05:19:21,604 | INFO     | process IDs to be killed: [2985936] (in reverse order)
[2025-12-15 06:19:47] 2025-12-15 05:19:21,628 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 06:19:47] 2025-12-15 05:19:21,628 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 06:19:47] 2025-12-15 05:19:21,629 | INFO     | did not find any defunct processes belonging to 2985936
[2025-12-15 06:19:47] 2025-12-15 05:19:21,630 | INFO     | did not find any defunct processes belonging to 2985936
[2025-12-15 06:19:47] 2025-12-15 05:19:21,630 | INFO     | ready for new job
[2025-12-15 06:19:47] 2025-12-15 05:19:21,630 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 06:19:47] 2025-12-15 05:19:21,631 | INFO     | ***************************************
[2025-12-15 06:19:47] 2025-12-15 05:19:21,631 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 06:19:47] 2025-12-15 05:19:21,631 | INFO     | ***************************************
[2025-12-15 06:19:47] 2025-12-15 05:19:21,631 | INFO     | 
[2025-12-15 06:19:47] 2025-12-15 05:19:21,631 | INFO     | architecture information:
[2025-12-15 06:19:47] 2025-12-15 05:19:21,632 | INFO     | executing command: cat /etc/os-release
[2025-12-15 06:19:47] 2025-12-15 05:19:21,640 | INFO     | cat /etc/os-release:
[2025-12-15 06:19:47] NAME="CentOS Linux"
[2025-12-15 06:19:47] VERSION="7 (Core)"
[2025-12-15 06:19:47] ID="centos"
[2025-12-15 06:19:47] ID_LIKE="rhel fedora"
[2025-12-15 06:19:47] VERSION_ID="7"
[2025-12-15 06:19:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 06:19:47] ANSI_COLOR="0;31"
[2025-12-15 06:19:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 06:19:47] HOME_URL="https://www.centos.org/"
[2025-12-15 06:19:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 06:19:47] 
[2025-12-15 06:19:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 06:19:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 06:19:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 06:19:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 06:19:47] 
[2025-12-15 06:19:47] 2025-12-15 05:19:21,640 | INFO     | ***************************************
[2025-12-15 06:19:47] 2025-12-15 05:19:22,143 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 06:19:47] 2025-12-15 05:19:22,155 | INFO     | sufficient remaining disk space (384449904640 B)
[2025-12-15 06:19:47] 2025-12-15 05:19:22,155 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 06:19:47] 2025-12-15 05:19:22,156 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 06:19:47] 2025-12-15 05:19:22,156 | INFO     | update_server=False
[2025-12-15 06:19:47] 2025-12-15 05:19:22,156 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 06:19:47] 2025-12-15 05:19:22,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 06:19:47] 2025-12-15 05:19:22,156 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 06:19:47] 2025-12-15 05:19:22,156 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-15 06:19:47] 2025-12-15 05:19:22,156 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 06:19:47] 2025-12-15 05:19:22,156 | INFO     | aborting loop
[2025-12-15 06:19:47] 2025-12-15 05:19:22,156 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 06:19:47] 2025-12-15 05:19:22,156 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 06:19:47] 2025-12-15 05:19:22,157 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 06:19:47] 2025-12-15 05:19:22,495 | INFO     | all data control threads have been joined
[2025-12-15 06:19:47] 2025-12-15 05:19:22,869 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 06:19:47] 2025-12-15 05:19:23,161 | INFO     | [job] retrieve thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:23,162 | INFO     | [job] queue monitor thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:23,162 | INFO     | [job] job monitor thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:23,380 | INFO     | all job control threads have been joined
[2025-12-15 06:19:47] 2025-12-15 05:19:23,500 | INFO     | [data] control thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:23,639 | INFO     | all payload control threads have been joined
[2025-12-15 06:19:47] 2025-12-15 05:19:23,831 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:23,847 | INFO     | [data] copytool_in thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:24,268 | INFO     | [payload] failed_post thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:24,386 | INFO     | [job] control thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:24,428 | INFO     | [job] validate thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:24,428 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:24,515 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:24,614 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:24,645 | INFO     | [payload] control thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:24,756 | INFO     | [payload] validate_post thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:24,876 | INFO     | [data] copytool_out thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:26,163 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 06:19:47] 2025-12-15 05:19:41,308 | INFO     | [monitor] cgroup control has ended
[2025-12-15 06:19:47] 2025-12-15 05:19:42,211 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139763490285376)>', '<ExcThread(monitor, started 139763216520960)>']
[2025-12-15 06:19:47] 2025-12-15 05:19:42,259 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 06:19:47] 2025-12-15 05:19:42,260 | INFO     | [monitor] control thread has ended
[2025-12-15 06:19:47] 2025-12-15 05:19:47,226 | INFO     | all workflow threads have been joined
[2025-12-15 06:19:47] 2025-12-15 05:19:47,227 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 06:19:47] 2025-12-15 05:19:47,227 | INFO     | traces error code: 0
[2025-12-15 06:19:47] 2025-12-15 05:19:47,227 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 06:19:47] 2025-12-15 05:19:47,276 [wrapper] ==== pilot stdout END ====
[2025-12-15 06:19:47] 2025-12-15 05:19:47,278 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 06:19:47] 2025-12-15 05:19:47,280 [wrapper] pilotpid: 2979496
[2025-12-15 06:19:47] 2025-12-15 05:19:47,283 [wrapper] Pilot exit status: 0
[2025-12-15 06:19:47] 2025-12-15 05:19:47,290 [wrapper] pandaids: 6929448841
[2025-12-15 06:19:47] 2025-12-15 05:19:47,305 [wrapper] cleanup supervisor_pilot 2997760 2979497
[2025-12-15 06:19:47] 2025-12-15 05:19:47,308 [wrapper] Test setup, not cleaning
[2025-12-15 06:19:47] 2025-12-15 05:19:47,310 [wrapper] apfmon messages muted
[2025-12-15 06:19:47] 2025-12-15 05:19:47,313 [wrapper] ==== wrapper stdout END ====
[2025-12-15 06:19:47] 2025-12-15 05:19:47,315 [wrapper] ==== wrapper stderr END ====
[2025-12-15 06:19:47]  *** Error codes and diagnostics ***
[2025-12-15 06:19:47]     "exeErrorCode": 0,
[2025-12-15 06:19:47]     "exeErrorDiag": "",
[2025-12-15 06:19:47]     "pilotErrorCode": 0,
[2025-12-15 06:19:47]     "pilotErrorDiag": "",
[2025-12-15 06:19:47]  *** Listing of results directory ***
[2025-12-15 06:19:47] total 337920
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc      5112 Dec 14 12:00 queuedata.json
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc    579449 Dec 14 12:00 pilot3.tar.gz
[2025-12-15 06:19:47] -rwx------ 1 boinc boinc     36322 Dec 14 12:00 runpilot2-wrapper.sh
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc       100 Dec 15 04:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 06:19:47] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 04:56 run_atlas
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc       105 Dec 15 04:56 job.xml
[2025-12-15 06:19:47] -rw-r--r-- 2 boinc boinc 191231873 Dec 15 04:56 EVNT.47886929._000092.pool.root.1
[2025-12-15 06:19:47] -rw-r--r-- 2 boinc boinc    592398 Dec 15 04:56 input.tar.gz
[2025-12-15 06:19:47] -rw-r--r-- 2 boinc boinc     15847 Dec 15 04:56 start_atlas.sh
[2025-12-15 06:19:47] drwxrwx--x 2 boinc boinc      4096 Dec 15 04:56 shared
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc         0 Dec 15 04:56 boinc_setup_complete
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc      6448 Dec 15 04:56 init_data.xml
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc         0 Dec 15 04:56 boinc_lockfile
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc      2512 Dec 15 04:56 pandaJob.out
[2025-12-15 06:19:47] -rw------- 1 boinc boinc    991016 Dec 15 04:56 agis_schedconf.cvmfs.json
[2025-12-15 06:19:47] -rw------- 1 boinc boinc   1516240 Dec 15 04:56 agis_ddmendpoints.agis.ALL.json
[2025-12-15 06:19:47] drwx------ 5 boinc boinc      4096 Dec 15 04:56 pilot3
[2025-12-15 06:19:47] -rw------- 1 boinc boinc 148952500 Dec 15 06:18 HITS.47886933._002720.pool.root.1
[2025-12-15 06:19:47] -rw------- 1 boinc boinc        95 Dec 15 06:18 pilot_heartbeat.json
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc       529 Dec 15 06:19 boinc_task_state.xml
[2025-12-15 06:19:47] -rw------- 1 boinc boinc      1013 Dec 15 06:19 memory_monitor_summary.json
[2025-12-15 06:19:47] -rw------- 1 boinc boinc    241740 Dec 15 06:19 log.47886933._002720.job.log.tgz.1
[2025-12-15 06:19:47] -rw------- 1 boinc boinc      7745 Dec 15 06:19 heartbeat.json
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc      8192 Dec 15 06:19 boinc_mmap_file
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc        27 Dec 15 06:19 wrapper_checkpoint.txt
[2025-12-15 06:19:47] -rw------- 1 boinc boinc      4556 Dec 15 06:19 pilotlog.txt
[2025-12-15 06:19:47] -rw------- 1 boinc boinc    728457 Dec 15 06:19 log.47886933._002720.job.log.1
[2025-12-15 06:19:47] -rw------- 1 boinc boinc       357 Dec 15 06:19 output.list
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc       620 Dec 15 06:19 runtime_log
[2025-12-15 06:19:47] -rw------- 1 boinc boinc    993280 Dec 15 06:19 result.tar.gz
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc      8917 Dec 15 06:19 runtime_log.err
[2025-12-15 06:19:47] -rw------- 1 boinc boinc       662 Dec 15 06:19 J5PMDml0yo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFNVKDmyWFlhn.diag
[2025-12-15 06:19:47] -rw-r--r-- 1 boinc boinc     11139 Dec 15 06:19 stderr.txt
[2025-12-15 06:19:47] HITS file was successfully produced:
[2025-12-15 06:19:47] -rw------- 1 boinc boinc 148952500 Dec 15 06:18 shared/HITS.pool.root.1
[2025-12-15 06:19:47]  *** Contents of shared directory: ***
[2025-12-15 06:19:47] total 333788
[2025-12-15 06:19:47] -rw-r--r-- 2 boinc boinc 191231873 Dec 15 04:56 ATLAS.root_0
[2025-12-15 06:19:47] -rw-r--r-- 2 boinc boinc    592398 Dec 15 04:56 input.tar.gz
[2025-12-15 06:19:47] -rw-r--r-- 2 boinc boinc     15847 Dec 15 04:56 start_atlas.sh
[2025-12-15 06:19:47] -rw------- 1 boinc boinc 148952500 Dec 15 06:18 HITS.pool.root.1
[2025-12-15 06:19:47] -rw------- 1 boinc boinc    993280 Dec 15 06:19 result.tar.gz
06:19:48 (2975776): run_atlas exited; CPU time 14206.047709
06:19:48 (2975776): called boinc_finish(0)

</stderr_txt>
]]>

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