Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:30 (400297): wrapper (7.7.26015): starting
00:04:30 (400297): wrapper: running run_atlas (--nthreads 9)
[2025-12-15 00:04:30] Arguments: --nthreads 9
[2025-12-15 00:04:30] Threads: 9
[2025-12-15 00:04:30] Checking for CVMFS
[2025-12-15 00:04:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 00:04:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 00:04:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 00:04:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 00:04:33] 2.13.3.0 8702 56828 382104 154019 3 302 13845133 21042177 14075 16776704 0 229547128 99.377 341872382 32324 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-15 00:04:33] CVMFS is ok
[2025-12-15 00:04:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 00:04:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 00:04:33] Further information can be found at the LHC@home message board.
[2025-12-15 00:04:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 00:04:33] Checking for apptainer binary...
[2025-12-15 00:04:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 00:04:33] Running /usr/bin/apptainer --version
[2025-12-15 00:04:33] apptainer version 1.4.5-2.el9
[2025-12-15 00:04:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 00:04:33] c-16-12.aglt2.org
[2025-12-15 00:04:33] apptainer works
[2025-12-15 00:04:34] Set ATHENA_PROC_NUMBER=9
[2025-12-15 00:04:34] Set ATHENA_CORE_NUMBER=9
[2025-12-15 00:04:34] Starting ATLAS job with PandaID=6929464967
[2025-12-15 00:04:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 22:55:43]  *** The last 200 lines of the pilot log: ***
[2025-12-16 22:55:43] 2025-12-16 17:26:40,548 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 22:55:43] 2025-12-16 17:26:41,816 | INFO     | time since job start (130849s) is within the limit (174528.0s)
[2025-12-16 22:55:43] 2025-12-16 17:26:43,066 | INFO     | monitor loop #4868: job 0:6929464967 is in state 'finished'
[2025-12-16 22:55:43] 2025-12-16 17:26:43,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 22:55:43] 2025-12-16 17:26:43,714 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-16 22:55:43] 2025-12-16 17:26:43,826 | INFO     | time since job start (130851s) is within the limit (174528.0s)
[2025-12-16 22:55:43] 2025-12-16 17:26:43,927 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.8646999999996
[2025-12-16 22:55:43] 2025-12-16 17:26:44,035 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6929464967/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 22:55:43] 2025-12-16 17:26:44,036 | INFO     | extracted standard info from prmon json
[2025-12-16 22:55:43] 2025-12-16 17:26:44,037 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 22:55:43] 2025-12-16 17:26:44,037 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 22:55:43] 2025-12-16 17:26:44,085 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 22:55:43] 2025-12-16 17:26:44,085 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 22:55:43] 2025-12-16 17:26:44,483 | INFO     | fitting pss+swap vs Time
[2025-12-16 22:55:43] 2025-12-16 17:26:44,490 | INFO     | sum of square deviations: 3043196934431.362
[2025-12-16 22:55:43] 2025-12-16 17:26:45,548 | INFO     | sum of deviations: 4490215508500.79
[2025-12-16 22:55:43] 2025-12-16 17:26:45,549 | INFO     | mean x: 1765840603.8524053
[2025-12-16 22:55:43] 2025-12-16 17:26:45,549 | INFO     | mean y: 2542311.527790752
[2025-12-16 22:55:43] 2025-12-16 17:26:45,549 | INFO     | intersect: -2602942984.2965
[2025-12-16 22:55:43] 2025-12-16 17:26:45,552 | INFO     | chi2: 10.48282128756017
[2025-12-16 22:55:43] 2025-12-16 17:26:45,555 | INFO     | sum of square deviations: 3021925816207.25
[2025-12-16 22:55:43] 2025-12-16 17:26:45,734 | INFO     | monitor loop #4869: job 0:6929464967 is in state 'finished'
[2025-12-16 22:55:43] 2025-12-16 17:26:45,734 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 22:55:43] 2025-12-16 17:26:45,854 | INFO     | time since job start (130853s) is within the limit (174528.0s)
[2025-12-16 22:55:43] 2025-12-16 17:26:46,331 | INFO     | sum of deviations: 4770473486680.949
[2025-12-16 22:55:43] 2025-12-16 17:26:46,332 | INFO     | mean x: 1765840451.3520598
[2025-12-16 22:55:43] 2025-12-16 17:26:46,332 | INFO     | mean y: 2544317.9428838952
[2025-12-16 22:55:43] 2025-12-16 17:26:46,332 | INFO     | intersect: -2785047293.2424498
[2025-12-16 22:55:43] 2025-12-16 17:26:46,339 | INFO     | chi2: 8.985983851840258
[2025-12-16 22:55:43] 2025-12-16 17:26:46,339 | INFO     | current chi2=8.985983851840258 (change=14.278955966712804 %)
[2025-12-16 22:55:43] 2025-12-16 17:26:46,339 | INFO     | right removable region: 2135
[2025-12-16 22:55:43] 2025-12-16 17:26:46,342 | INFO     | sum of square deviations: 3021925355722.68
[2025-12-16 22:55:43] 2025-12-16 17:26:46,615 | INFO     | sum of deviations: 3764240623514.155
[2025-12-16 22:55:43] 2025-12-16 17:26:46,619 | INFO     | mean x: 1765840756.3544006
[2025-12-16 22:55:43] 2025-12-16 17:26:46,619 | INFO     | mean y: 2547515.5374531834
[2025-12-16 22:55:43] 2025-12-16 17:26:46,619 | INFO     | intersect: -2197059929.1462965
[2025-12-16 22:55:43] 2025-12-16 17:26:46,622 | INFO     | chi2: 6.568600004123896
[2025-12-16 22:55:43] 2025-12-16 17:26:46,622 | INFO     | current chi2=6.568600004123896 (change=37.339387709310955 %)
[2025-12-16 22:55:43] 2025-12-16 17:26:46,629 | INFO     | sum of square deviations: 3000754299146.436
[2025-12-16 22:55:43] 2025-12-16 17:26:47,030 | INFO     | sum of deviations: 3289134461814.339
[2025-12-16 22:55:43] 2025-12-16 17:26:47,038 | INFO     | mean x: 1765840908.8521821
[2025-12-16 22:55:43] 2025-12-16 17:26:47,038 | INFO     | mean y: 2550937.032848428
[2025-12-16 22:55:43] 2025-12-16 17:26:47,039 | INFO     | intersect: -1932991799.3515916
[2025-12-16 22:55:43] 2025-12-16 17:26:47,041 | INFO     | chi2: 4.926992863269717
[2025-12-16 22:55:43] 2025-12-16 17:26:47,042 | INFO     | current chi2=4.926992863269717 (change=24.991735526954685 %)
[2025-12-16 22:55:43] 2025-12-16 17:26:47,052 | INFO     | left removable region: 20
[2025-12-16 22:55:43] 2025-12-16 17:26:47,055 | INFO     | sum of square deviations: 2933669956235.487
[2025-12-16 22:55:43] 2025-12-16 17:26:47,447 | INFO     | sum of deviations: 3050144150086.686
[2025-12-16 22:55:43] 2025-12-16 17:26:47,447 | INFO     | mean x: 1765841030.8501182
[2025-12-16 22:55:43] 2025-12-16 17:26:47,447 | INFO     | mean y: 2556748.8444444444
[2025-12-16 22:55:43] 2025-12-16 17:26:47,448 | INFO     | intersect: -1833392683.2934458
[2025-12-16 22:55:43] 2025-12-16 17:26:47,454 | INFO     | chi2: 2.52240820079763
[2025-12-16 22:55:43] 2025-12-16 17:26:47,455 | INFO     | current memory leak: 1.04 B/s (using 2115 data points, chi2=2.52)
[2025-12-16 22:55:43] 2025-12-16 17:26:47,457 | INFO     | could have reported an average CPU frequency of 2899 MHz (73 samples)
[2025-12-16 22:55:43] 2025-12-16 17:26:47,457 | INFO     | ..............................
[2025-12-16 22:55:43] 2025-12-16 17:26:47,457 | INFO     | . Timing measurements:
[2025-12-16 22:55:43] 2025-12-16 17:26:47,457 | INFO     | . get job = 0 s
[2025-12-16 22:55:43] 2025-12-16 17:26:47,458 | INFO     | . initial setup = 7 s
[2025-12-16 22:55:43] 2025-12-16 17:26:47,462 | INFO     | . payload setup = 55 s
[2025-12-16 22:55:43] 2025-12-16 17:26:47,462 | INFO     | . stage-in = 0 s
[2025-12-16 22:55:43] 2025-12-16 17:26:47,462 | INFO     | . payload execution = 130632 s
[2025-12-16 22:55:43] 2025-12-16 17:26:47,463 | INFO     | . stage-out = 13 s
[2025-12-16 22:55:43] 2025-12-16 17:26:47,463 | INFO     | . log creation = 4 s
[2025-12-16 22:55:43] 2025-12-16 17:26:47,463 | INFO     | ..............................
[2025-12-16 22:55:43] 2025-12-16 17:26:47,864 | INFO     | time since job start (130855s) is within the limit (174528.0s)
[2025-12-16 22:55:43] 2025-12-16 17:26:48,085 | INFO     | 
[2025-12-16 22:55:43] 2025-12-16 17:26:48,085 | INFO     | job summary report
[2025-12-16 22:55:43] 2025-12-16 17:26:48,085 | INFO     | --------------------------------------------------
[2025-12-16 22:55:43] 2025-12-16 17:26:48,085 | INFO     | PanDA job id: 6929464967
[2025-12-16 22:55:43] 2025-12-16 17:26:48,086 | INFO     | task id: 47898763
[2025-12-16 22:55:43] 2025-12-16 17:26:48,086 | INFO     | errors: (none)
[2025-12-16 22:55:43] 2025-12-16 17:26:48,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 22:55:43] 2025-12-16 17:26:48,086 | INFO     | pilot state: finished 
[2025-12-16 22:55:43] 2025-12-16 17:26:48,086 | INFO     | transexitcode: 0
[2025-12-16 22:55:43] 2025-12-16 17:26:48,086 | INFO     | exeerrorcode: 0
[2025-12-16 22:55:43] 2025-12-16 17:26:48,087 | INFO     | exeerrordiag: 
[2025-12-16 22:55:43] 2025-12-16 17:26:48,087 | INFO     | exitcode: 0
[2025-12-16 22:55:43] 2025-12-16 17:26:48,087 | INFO     | exitmsg: OK
[2025-12-16 22:55:43] 2025-12-16 17:26:48,087 | INFO     | cpuconsumptiontime: 114671 s
[2025-12-16 22:55:43] 2025-12-16 17:26:48,087 | INFO     | nevents: 400
[2025-12-16 22:55:43] 2025-12-16 17:26:48,087 | INFO     | neventsw: 0
[2025-12-16 22:55:43] 2025-12-16 17:26:48,087 | INFO     | pid: 433376
[2025-12-16 22:55:43] 2025-12-16 17:26:48,088 | INFO     | pgrp: 433376
[2025-12-16 22:55:43] 2025-12-16 17:26:48,088 | INFO     | corecount: 9
[2025-12-16 22:55:43] 2025-12-16 17:26:48,088 | INFO     | event service: False
[2025-12-16 22:55:43] 2025-12-16 17:26:48,088 | INFO     | sizes: {0: 2283128, 1: 2283813, 2: 2283841, 3: 2284040, 15: 2284040, 26: 2284068, 35: 2284486, 36: 2284514, 130698: 2360467, 130700: 2360466, 130717: 2369520, 1307
[2025-12-16 22:55:43] 2025-12-16 17:26:48,088 | INFO     | --------------------------------------------------
[2025-12-16 22:55:43] 2025-12-16 17:26:48,088 | INFO     | 
[2025-12-16 22:55:43] 2025-12-16 17:26:48,089 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-16 22:55:43] 2025-12-16 17:26:48,261 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,262 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,262 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,262 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,262 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,262 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,262 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,263 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,263 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,263 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,263 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,263 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,263 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,264 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,264 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,264 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,264 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 22:55:43] 2025-12-16 17:26:48,264 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,264 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 22:55:43] 2025-12-16 17:26:48,273 | INFO     | job 6929464967 has completed (purged errors)
[2025-12-16 22:55:43] 2025-12-16 17:26:48,273 | INFO     | overall cleanup function is called
[2025-12-16 22:55:43] 2025-12-16 17:26:49,292 | INFO     | --- collectZombieJob: --- 10, [433376]
[2025-12-16 22:55:43] 2025-12-16 17:26:49,292 | INFO     | zombie collector waiting for pid 433376
[2025-12-16 22:55:43] 2025-12-16 17:26:49,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 22:55:43] 2025-12-16 17:26:49,293 | INFO     | collected zombie processes
[2025-12-16 22:55:43] 2025-12-16 17:26:49,293 | INFO     | will attempt to kill all subprocesses of pid=433376
[2025-12-16 22:55:43] 2025-12-16 17:26:50,461 | INFO     | process IDs to be killed: [433376] (in reverse order)
[2025-12-16 22:55:43] 2025-12-16 17:26:50,833 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 22:55:43] 2025-12-16 17:26:50,834 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 22:55:43] 2025-12-16 17:26:50,883 | INFO     | did not find any defunct processes belonging to 433376
[2025-12-16 22:55:43] 2025-12-16 17:26:50,928 | INFO     | did not find any defunct processes belonging to 433376
[2025-12-16 22:55:43] 2025-12-16 17:26:50,928 | INFO     | ready for new job
[2025-12-16 22:55:43] 2025-12-16 17:26:50,928 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 22:55:43] 2025-12-16 17:26:50,943 | INFO     | ***************************************
[2025-12-16 22:55:43] 2025-12-16 17:26:50,943 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 22:55:43] 2025-12-16 17:26:50,943 | INFO     | ***************************************
[2025-12-16 22:55:43] 2025-12-16 17:26:50,943 | INFO     | 
[2025-12-16 22:55:43] 2025-12-16 17:26:50,945 | INFO     | architecture information:
[2025-12-16 22:55:43] 2025-12-16 17:26:50,949 | INFO     | executing command: cat /etc/os-release
[2025-12-16 22:55:43] 2025-12-16 17:26:50,992 | INFO     | cat /etc/os-release:
[2025-12-16 22:55:43] NAME="CentOS Linux"
[2025-12-16 22:55:43] VERSION="7 (Core)"
[2025-12-16 22:55:43] ID="centos"
[2025-12-16 22:55:43] ID_LIKE="rhel fedora"
[2025-12-16 22:55:43] VERSION_ID="7"
[2025-12-16 22:55:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 22:55:43] ANSI_COLOR="0;31"
[2025-12-16 22:55:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 22:55:43] HOME_URL="https://www.centos.org/"
[2025-12-16 22:55:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 22:55:43] 
[2025-12-16 22:55:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 22:55:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 22:55:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 22:55:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 22:55:43] 
[2025-12-16 22:55:43] 2025-12-16 17:26:50,992 | INFO     | ***************************************
[2025-12-16 22:55:43] 2025-12-16 17:26:51,526 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-16 22:55:43] 2025-12-16 17:26:51,764 | INFO     | sufficient remaining disk space (51951697920 B)
[2025-12-16 22:55:43] 2025-12-16 17:26:51,765 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 22:55:43] 2025-12-16 17:26:51,765 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 22:55:43] 2025-12-16 17:26:51,765 | INFO     | update_server=False
[2025-12-16 22:55:43] 2025-12-16 17:26:51,765 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 22:55:43] 2025-12-16 17:26:51,791 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 22:55:43] 2025-12-16 17:26:51,840 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 22:55:43] 2025-12-16 17:26:51,840 | INFO     | aborting loop
[2025-12-16 22:55:43] 2025-12-16 17:26:52,252 | INFO     | all data control threads have been joined
[2025-12-16 22:55:43] 2025-12-16 17:26:52,771 | INFO     | [job] retrieve thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:52,828 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:52,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 22:55:43] 2025-12-16 17:26:52,845 | INFO     | all payload control threads have been joined
[2025-12-16 22:55:43] 2025-12-16 17:26:52,871 | INFO     | [job] job monitor thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:52,960 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 22:55:43] 2025-12-16 17:26:53,258 | INFO     | [data] control thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:53,501 | INFO     | [data] copytool_in thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:53,522 | INFO     | all job control threads have been joined
[2025-12-16 22:55:43] 2025-12-16 17:26:53,522 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:53,535 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:53,542 | INFO     | [job] validate thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:53,553 | INFO     | [payload] validate_post thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:53,613 | INFO     | [payload] failed_post thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:53,805 | INFO     | [data] copytool_out thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:53,845 | INFO     | [job] queue monitor thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:53,853 | INFO     | [payload] control thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:54,151 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:54,528 | INFO     | [job] control thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:26:57,058 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 22:55:43] 2025-12-16 17:27:23,473 | INFO     | PID=406889 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 22:55:43] 2025-12-16 17:27:23,473 | INFO     | .. there are 24 such processes running
[2025-12-16 22:55:43] 2025-12-16 17:27:23,473 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 22:55:43] 2025-12-16 17:27:23,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 22:55:43] 2025-12-16 17:27:23,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 22:55:43] 2025-12-16 17:27:45,714 | INFO     | [monitor] cgroup control has ended
[2025-12-16 22:55:43] 2025-12-16 17:27:47,188 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140093820753728)>', '<ExcThread(monitor, started 140093109040896)>']
[2025-12-16 22:55:43] 2025-12-16 17:27:47,879 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 22:55:43] 2025-12-16 17:27:47,879 | INFO     | [monitor] control thread has ended
[2025-12-16 22:55:43] 2025-12-16 17:27:52,214 | INFO     | all workflow threads have been joined
[2025-12-16 22:55:43] 2025-12-16 17:27:52,214 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 22:55:43] 2025-12-16 17:27:52,214 | INFO     | traces error code: 0
[2025-12-16 22:55:43] 2025-12-16 17:27:52,215 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 22:55:43] 2025-12-16 17:27:52,786 [wrapper] ==== pilot stdout END ====
[2025-12-16 22:55:43] 2025-12-16 17:27:52,836 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 22:55:43] 2025-12-16 17:27:52,869 [wrapper] pilotpid: 406889
[2025-12-16 22:55:43] 2025-12-16 17:27:52,873 [wrapper] Pilot exit status: 0
[2025-12-16 22:55:43] 2025-12-16 17:27:52,995 [wrapper] pandaids: 6929464967
[2025-12-16 22:55:43] 2025-12-16 17:27:53,135 [wrapper] cleanup supervisor_pilot 3314729 406890
[2025-12-16 22:55:43] 2025-12-16 17:27:53,171 [wrapper] Test setup, not cleaning
[2025-12-16 22:55:43] 2025-12-16 17:27:53,201 [wrapper] apfmon messages muted
[2025-12-16 22:55:43] 2025-12-16 17:27:53,242 [wrapper] ==== wrapper stdout END ====
[2025-12-16 22:55:43] 2025-12-16 17:27:53,259 [wrapper] ==== wrapper stderr END ====
[2025-12-16 22:55:43]  *** Error codes and diagnostics ***
[2025-12-16 22:55:43]     "exeErrorCode": 0,
[2025-12-16 22:55:43]     "exeErrorDiag": "",
[2025-12-16 22:55:43]     "pilotErrorCode": 0,
[2025-12-16 22:55:43]     "pilotErrorDiag": "",
[2025-12-16 22:55:43]  *** Listing of results directory ***
[2025-12-16 22:55:43] total 469180
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas    579449 Dec 14 10:56 pilot3.tar.gz
[2025-12-16 22:55:43] -rwx------. 1 boincer umatlas     36322 Dec 14 10:57 runpilot2-wrapper.sh
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas      5112 Dec 14 10:58 queuedata.json
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas       100 Dec 15 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 22:55:43] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 15 00:04 run_atlas
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas       105 Dec 15 00:04 job.xml
[2025-12-16 22:55:43] -rw-r--r--. 2 boincer umatlas 224909555 Dec 15 00:04 EVNT.47898761._000506.pool.root.1
[2025-12-16 22:55:43] -rw-r--r--. 2 boincer umatlas     15847 Dec 15 00:04 start_atlas.sh
[2025-12-16 22:55:43] drwxrwx--x. 2 boincer umatlas      4096 Dec 15 00:04 shared
[2025-12-16 22:55:43] -rw-r--r--. 2 boincer umatlas    592395 Dec 15 00:04 input.tar.gz
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas         0 Dec 15 00:04 boinc_lockfile
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas      2506 Dec 15 00:04 pandaJob.out
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas        57 Dec 15 00:04 setup.sh.local
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas    991016 Dec 15 00:05 agis_schedconf.cvmfs.json
[2025-12-16 22:55:43] drwx------. 5 boincer umatlas      4096 Dec 15 00:05 pilot3
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas 224558537 Dec 16 12:22 HITS.47898763._011387.pool.root.1
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas       532 Dec 16 12:23 boinc_task_state.xml
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas      1043 Dec 16 12:25 memory_monitor_summary.json
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas   1516240 Dec 16 12:25 agis_ddmendpoints.agis.ALL.json
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas   1602886 Dec 16 12:25 log.47898763._011387.job.log.tgz.1
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas        95 Dec 16 12:26 pilot_heartbeat.json
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas      7827 Dec 16 12:26 heartbeat.json
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas      4823 Dec 16 12:27 pilotlog.txt
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas  11926404 Dec 16 12:27 log.47898763._011387.job.log.1
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas       357 Dec 16 12:27 output.list
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas       620 Dec 16 12:27 runtime_log
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas  13547520 Dec 16 12:27 result.tar.gz
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas      9339 Dec 16 12:27 runtime_log.err
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas       660 Dec 16 12:27 3QMKDmJe3o8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0dRKDmYCbBQm.diag
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas      6524 Dec 16 22:55 init_data.xml
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas      8192 Dec 16 22:55 boinc_mmap_file
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas        29 Dec 16 22:55 wrapper_checkpoint.txt
[2025-12-16 22:55:43] -rw-r--r--. 1 boincer umatlas     21446 Dec 16 22:55 stderr.txt
[2025-12-16 22:55:43] HITS file was successfully produced:
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas 224558537 Dec 16 12:22 shared/HITS.pool.root.1
[2025-12-16 22:55:43]  *** Contents of shared directory: ***
[2025-12-16 22:55:43] total 452768
[2025-12-16 22:55:43] -rw-r--r--. 2 boincer umatlas 224909555 Dec 15 00:04 ATLAS.root_0
[2025-12-16 22:55:43] -rw-r--r--. 2 boincer umatlas     15847 Dec 15 00:04 start_atlas.sh
[2025-12-16 22:55:43] -rw-r--r--. 2 boincer umatlas    592395 Dec 15 00:04 input.tar.gz
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas 224558537 Dec 16 12:22 HITS.pool.root.1
[2025-12-16 22:55:43] -rw-------. 1 boincer umatlas  13547520 Dec 16 12:27 result.tar.gz
22:55:45 (400297): run_atlas exited; CPU time 120278.022000
22:55:45 (400297): called boinc_finish(0)

</stderr_txt>
]]>

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