Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:19:51 (3000325): wrapper (7.7.26015): starting
06:19:51 (3000325): wrapper: running run_atlas (--nthreads 3)
[2025-12-15 06:19:51] Arguments: --nthreads 3
[2025-12-15 06:19:51] Threads: 3
[2025-12-15 06:19:51] Checking for CVMFS
[2025-12-15 06:19:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 06:19:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 06:19:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 06:19:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 06:19:51] 2.9.2.0 2238870 2923 82684 154020 1 56 20820305 36864000 0 130560 0 2012718 99.990 103684 16127 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 06:19:51] CVMFS is ok
[2025-12-15 06:19:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 06:19:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 06:19:51] Further information can be found at the LHC@home message board.
[2025-12-15 06:19:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 06:19:51] Checking for apptainer binary...
[2025-12-15 06:19:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 06:19:51] Running /usr/bin/apptainer --version
[2025-12-15 06:19:51] apptainer version 1.4.1-1.1
[2025-12-15 06:19:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 06:19:51] magicA161a
[2025-12-15 06:19:51] apptainer works
[2025-12-15 06:19:51] Set ATHENA_PROC_NUMBER=3
[2025-12-15 06:19:51] Set ATHENA_CORE_NUMBER=3
[2025-12-15 06:19:52] Starting ATLAS job with PandaID=6929465033
[2025-12-15 06:19:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 08:13:28]  *** The last 200 lines of the pilot log: ***
[2025-12-15 08:13:28] 2025-12-15 07:12:58,175 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 08:13:28] 2025-12-15 07:12:58,672 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 08:13:28] 2025-12-15 07:12:58,672 | INFO     | aborting loop
[2025-12-15 08:13:28] 2025-12-15 07:12:58,674 | INFO     | all data control threads have been joined
[2025-12-15 08:13:28] 2025-12-15 07:12:59,109 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 08:13:28] 2025-12-15 07:12:59,181 | INFO     | [job] retrieve thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:12:59,181 | INFO     | [job] queue monitor thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:12:59,207 | INFO     | [data] copytool_in thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:12:59,289 | INFO     | all job control threads have been joined
[2025-12-15 08:13:28] 2025-12-15 07:12:59,566 | INFO     | all payload control threads have been joined
[2025-12-15 08:13:28] 2025-12-15 07:12:59,640 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:12:59,678 | INFO     | [job] job monitor thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:12:59,680 | INFO     | [data] control thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:12:59,791 | INFO     | [job] validate thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:12:59,829 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:12:59,936 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:13:00,294 | INFO     | [job] control thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:13:00,368 | INFO     | [payload] validate_post thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:13:00,571 | INFO     | [payload] control thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:13:00,690 | INFO     | [payload] failed_post thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:13:01,115 | INFO     | [data] copytool_out thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:13:02,183 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:13:05,515 | INFO     | [monitor] cgroup control has ended
[2025-12-15 08:13:28] 2025-12-15 07:13:08,779 | INFO     | job.realtimelogging is not enabled
[2025-12-15 08:13:28] 2025-12-15 07:13:09,785 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 08:13:28] 2025-12-15 07:13:09,790 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140330526721856)>', '<ExcThread(monitor, started 140330036868864)>']
[2025-12-15 08:13:28] 2025-12-15 07:13:14,805 | INFO     | all workflow threads have been joined
[2025-12-15 08:13:28] 2025-12-15 07:13:14,805 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 08:13:28] 2025-12-15 07:13:14,806 | INFO     | traces error code: 0
[2025-12-15 08:13:28] 2025-12-15 07:13:14,806 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 08:13:28] 2025-12-15 07:13:28,021 | INFO     | PID=3004045 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 08:13:28] 2025-12-15 07:13:28,021 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 08:13:28] 2025-12-15 07:13:28,022 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 08:13:28] 2025-12-15 07:13:28,022 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 08:13:28] 2025-12-15 07:13:28,022 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 08:13:28] 2025-12-15 07:13:28,022 | CRITICAL | thread 'MainThread' is not alive
[2025-12-15 08:13:28] 2025-12-15 07:13:28,022 | INFO     | [monitor] control thread has ended
[2025-12-15 08:13:28] 2025-12-15 07:13:28,067 [wrapper] ==== pilot stdout END ====
[2025-12-15 08:13:28] 2025-12-15 07:13:28,069 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 08:13:28] 2025-12-15 07:13:28,072 [wrapper] pilotpid: 3004045
[2025-12-15 08:13:28] 2025-12-15 07:13:28,074 [wrapper] Pilot exit status: 0
[2025-12-15 08:13:28] 2025-12-15 07:13:28,081 [wrapper] pandaids: 6929465033
[2025-12-15 08:13:28] 2025-12-15 07:13:28,097 [wrapper] cleanup supervisor_pilot 3025039 3004046
[2025-12-15 08:13:28] 2025-12-15 07:13:28,099 [wrapper] Test setup, not cleaning
[2025-12-15 08:13:28] 2025-12-15 07:13:28,102 [wrapper] apfmon messages muted
[2025-12-15 08:13:28] 2025-12-15 07:13:28,104 [wrapper] ==== wrapper stdout END ====
[2025-12-15 08:13:28] 2025-12-15 07:13:28,106 [wrapper] ==== wrapper stderr END ====
[2025-12-15 08:13:28]  *** Error codes and diagnostics ***
[2025-12-15 08:13:28]     "exeErrorCode": 0,
[2025-12-15 08:13:28]     "exeErrorDiag": "",
[2025-12-15 08:13:28]     "pilotErrorCode": 0,
[2025-12-15 08:13:28]     "pilotErrorDiag": "",
[2025-12-15 08:13:28]  *** Listing of results directory ***
[2025-12-15 08:13:28] total 443296
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc    579449 Dec 14 16:56 pilot3.tar.gz
[2025-12-15 08:13:28] -rwx------ 1 boinc boinc     36322 Dec 14 16:57 runpilot2-wrapper.sh
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc      5112 Dec 14 16:58 queuedata.json
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc       100 Dec 15 06:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 08:13:28] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 06:19 run_atlas
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc       105 Dec 15 06:19 job.xml
[2025-12-15 08:13:28] -rw-r--r-- 2 boinc boinc 226153721 Dec 15 06:19 EVNT.47898761._000509.pool.root.1
[2025-12-15 08:13:28] -rw-r--r-- 2 boinc boinc    592391 Dec 15 06:19 input.tar.gz
[2025-12-15 08:13:28] -rw-r--r-- 2 boinc boinc     15847 Dec 15 06:19 start_atlas.sh
[2025-12-15 08:13:28] drwxrwx--x 2 boinc boinc      4096 Dec 15 06:19 shared
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc         0 Dec 15 06:19 boinc_setup_complete
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc      6448 Dec 15 06:19 init_data.xml
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc         0 Dec 15 06:19 boinc_lockfile
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc      2503 Dec 15 06:19 pandaJob.out
[2025-12-15 08:13:28] -rw------- 1 boinc boinc    991016 Dec 15 06:19 agis_schedconf.cvmfs.json
[2025-12-15 08:13:28] -rw------- 1 boinc boinc   1516240 Dec 15 06:19 agis_ddmendpoints.agis.ALL.json
[2025-12-15 08:13:28] drwx------ 5 boinc boinc      4096 Dec 15 06:19 pilot3
[2025-12-15 08:13:28] -rw------- 1 boinc boinc 221401750 Dec 15 08:12 HITS.47898763._011453.pool.root.1
[2025-12-15 08:13:28] -rw------- 1 boinc boinc        95 Dec 15 08:12 pilot_heartbeat.json
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc       529 Dec 15 08:12 boinc_task_state.xml
[2025-12-15 08:13:28] -rw------- 1 boinc boinc      1014 Dec 15 08:12 memory_monitor_summary.json
[2025-12-15 08:13:28] -rw------- 1 boinc boinc    263683 Dec 15 08:12 log.47898763._011453.job.log.tgz.1
[2025-12-15 08:13:28] -rw------- 1 boinc boinc      7749 Dec 15 08:12 heartbeat.json
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc        27 Dec 15 08:13 wrapper_checkpoint.txt
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc      8192 Dec 15 08:13 boinc_mmap_file
[2025-12-15 08:13:28] -rw------- 1 boinc boinc       817 Dec 15 08:13 pilotlog.txt
[2025-12-15 08:13:28] -rw------- 1 boinc boinc    978225 Dec 15 08:13 log.47898763._011453.job.log.1
[2025-12-15 08:13:28] -rw------- 1 boinc boinc       357 Dec 15 08:13 output.list
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc       620 Dec 15 08:13 runtime_log
[2025-12-15 08:13:28] -rw------- 1 boinc boinc   1259520 Dec 15 08:13 result.tar.gz
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc      8917 Dec 15 08:13 runtime_log.err
[2025-12-15 08:13:28] -rw------- 1 boinc boinc       663 Dec 15 08:13 fyxKDmJe3o8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIeRKDmdDNONo.diag
[2025-12-15 08:13:28] -rw-r--r-- 1 boinc boinc      7257 Dec 15 08:13 stderr.txt
[2025-12-15 08:13:28] HITS file was successfully produced:
[2025-12-15 08:13:28] -rw------- 1 boinc boinc 221401750 Dec 15 08:12 shared/HITS.pool.root.1
[2025-12-15 08:13:28]  *** Contents of shared directory: ***
[2025-12-15 08:13:28] total 438908
[2025-12-15 08:13:28] -rw-r--r-- 2 boinc boinc 226153721 Dec 15 06:19 ATLAS.root_0
[2025-12-15 08:13:28] -rw-r--r-- 2 boinc boinc    592391 Dec 15 06:19 input.tar.gz
[2025-12-15 08:13:28] -rw-r--r-- 2 boinc boinc     15847 Dec 15 06:19 start_atlas.sh
[2025-12-15 08:13:28] -rw------- 1 boinc boinc 221401750 Dec 15 08:12 HITS.pool.root.1
[2025-12-15 08:13:28] -rw------- 1 boinc boinc   1259520 Dec 15 08:13 result.tar.gz
08:13:50 (3000325): run_atlas exited; CPU time 19663.700915
08:13:50 (3000325): called boinc_finish(0)

</stderr_txt>
]]>

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