Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:49:09 (3354257): wrapper (7.7.26015): starting
19:49:09 (3354257): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 19:49:09] Arguments: --nthreads 8
[2025-12-14 19:49:09] Threads: 8
[2025-12-14 19:49:09] Checking for CVMFS
[2025-12-14 19:49:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 19:49:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 19:49:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 19:49:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 19:49:15] 2.13.3.0 12022 56575 351148 154013 0 360 31977944 32935936 38751 16776704 0 118639948 99.517 141586631 12082 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-14 19:49:15] CVMFS is ok
[2025-12-14 19:49:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 19:49:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 19:49:15] Further information can be found at the LHC@home message board.
[2025-12-14 19:49:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 19:49:15] Checking for apptainer binary...
[2025-12-14 19:49:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 19:49:15] Running /usr/bin/apptainer --version
[2025-12-14 19:49:15] apptainer version 1.4.5-2.el9
[2025-12-14 19:49:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 19:49:17] c6-12-25-4.aglt2.org
[2025-12-14 19:49:17] apptainer works
[2025-12-14 19:49:19] Set ATHENA_PROC_NUMBER=8
[2025-12-14 19:49:19] Set ATHENA_CORE_NUMBER=8
[2025-12-14 19:49:19] Starting ATLAS job with PandaID=6930661649
[2025-12-14 19:49:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 10:43:42]  *** The last 200 lines of the pilot log: ***
[2025-12-15 10:43:42] 2025-12-15 15:42:18,699 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 10:43:42] 2025-12-15 15:42:18,699 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 10:43:42] 2025-12-15 15:42:18,705 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 10:43:42] 2025-12-15 15:42:18,705 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 10:43:42] 2025-12-15 15:42:18,885 | INFO     | fitting pss+swap vs Time
[2025-12-15 10:43:42] 2025-12-15 15:42:18,901 | INFO     | sum of square deviations: 205610259418.9679
[2025-12-15 10:43:42] 2025-12-15 15:42:19,157 | INFO     | time since job start (53471s) is within the limit (174528.0s)
[2025-12-15 10:43:42] 2025-12-15 15:42:19,179 | INFO     | sum of deviations: 801312991630.6105
[2025-12-15 10:43:42] 2025-12-15 15:42:19,180 | INFO     | mean x: 1765786670.5344036
[2025-12-15 10:43:42] 2025-12-15 15:42:19,180 | INFO     | mean y: 2458120.1295871558
[2025-12-15 10:43:42] 2025-12-15 15:42:19,181 | INFO     | intersect: -6879240310.415007
[2025-12-15 10:43:42] 2025-12-15 15:42:19,203 | INFO     | chi2: 8.500814197618295
[2025-12-15 10:43:42] 2025-12-15 15:42:19,229 | INFO     | sum of square deviations: 202093775318.9614
[2025-12-15 10:43:42] 2025-12-15 15:42:19,412 | INFO     | sum of deviations: 960241881621.9225
[2025-12-15 10:43:42] 2025-12-15 15:42:19,438 | INFO     | mean x: 1765786518.0346022
[2025-12-15 10:43:42] 2025-12-15 15:42:19,439 | INFO     | mean y: 2464996.069204152
[2025-12-15 10:43:42] 2025-12-15 15:42:19,439 | INFO     | intersect: -8387611174.975939
[2025-12-15 10:43:42] 2025-12-15 15:42:19,442 | INFO     | chi2: 6.430500716323912
[2025-12-15 10:43:42] 2025-12-15 15:42:19,442 | INFO     | current chi2=6.430500716323912 (change=24.35429634345415 %)
[2025-12-15 10:43:42] 2025-12-15 15:42:19,449 | INFO     | right removable region: 866
[2025-12-15 10:43:42] 2025-12-15 15:42:19,452 | INFO     | sum of square deviations: 202093543534.66687
[2025-12-15 10:43:42] 2025-12-15 15:42:19,679 | INFO     | sum of deviations: 530291704693.8038
[2025-12-15 10:43:42] 2025-12-15 15:42:19,680 | INFO     | mean x: 1765786823.0392158
[2025-12-15 10:43:42] 2025-12-15 15:42:19,680 | INFO     | mean y: 2469867.594002307
[2025-12-15 10:43:42] 2025-12-15 15:42:19,681 | INFO     | intersect: -4630939434.542836
[2025-12-15 10:43:42] 2025-12-15 15:42:19,698 | INFO     | chi2: 4.915588520513383
[2025-12-15 10:43:42] 2025-12-15 15:42:19,698 | INFO     | current chi2=4.915588520513383 (change=42.17508574777929 %)
[2025-12-15 10:43:42] 2025-12-15 15:42:19,716 | INFO     | sum of square deviations: 198617206753.91183
[2025-12-15 10:43:42] 2025-12-15 15:42:19,927 | INFO     | sum of deviations: 341449617527.605
[2025-12-15 10:43:42] 2025-12-15 15:42:19,927 | INFO     | mean x: 1765786975.5429235
[2025-12-15 10:43:42] 2025-12-15 15:42:19,928 | INFO     | mean y: 2478150.402552204
[2025-12-15 10:43:42] 2025-12-15 15:42:19,928 | INFO     | intersect: -3033146493.0423074
[2025-12-15 10:43:42] 2025-12-15 15:42:19,943 | INFO     | chi2: 3.27295302342404
[2025-12-15 10:43:42] 2025-12-15 15:42:19,943 | INFO     | current chi2=3.27295302342404 (change=33.41686331625225 %)
[2025-12-15 10:43:42] 2025-12-15 15:42:19,965 | INFO     | sum of square deviations: 195181121495.40277
[2025-12-15 10:43:42] 2025-12-15 15:42:20,226 | INFO     | sum of deviations: 236065715024.3188
[2025-12-15 10:43:42] 2025-12-15 15:42:20,227 | INFO     | mean x: 1765787128.0431738
[2025-12-15 10:43:42] 2025-12-15 15:42:20,227 | INFO     | mean y: 2482822.7211201866
[2025-12-15 10:43:42] 2025-12-15 15:42:20,227 | INFO     | intersect: -2133183771.3048205
[2025-12-15 10:43:42] 2025-12-15 15:42:20,244 | INFO     | chi2: 2.727257427846265
[2025-12-15 10:43:42] 2025-12-15 15:42:20,245 | INFO     | current chi2=2.727257427846265 (change=16.67288200204257 %)
[2025-12-15 10:43:42] 2025-12-15 15:42:20,245 | INFO     | left removable region: 30
[2025-12-15 10:43:42] 2025-12-15 15:42:20,270 | INFO     | sum of square deviations: 181182123411.9237
[2025-12-15 10:43:42] 2025-12-15 15:42:20,483 | INFO     | sum of deviations: 252401068082.89
[2025-12-15 10:43:42] 2025-12-15 15:42:20,484 | INFO     | mean x: 1765787402.535885
[2025-12-15 10:43:42] 2025-12-15 15:42:20,484 | INFO     | mean y: 2496512.0203349283
[2025-12-15 10:43:42] 2025-12-15 15:42:20,485 | INFO     | intersect: -2457385390.3132954
[2025-12-15 10:43:42] 2025-12-15 15:42:20,504 | INFO     | chi2: 0.3155559479706858
[2025-12-15 10:43:42] 2025-12-15 15:42:20,504 | INFO     | current memory leak: 1.39 B/s (using 836 data points, chi2=0.32)
[2025-12-15 10:43:42] 2025-12-15 15:42:20,514 | INFO     | could have reported an average CPU frequency of 1000 MHz (32 samples)
[2025-12-15 10:43:42] 2025-12-15 15:42:20,514 | INFO     | ..............................
[2025-12-15 10:43:42] 2025-12-15 15:42:20,514 | INFO     | . Timing measurements:
[2025-12-15 10:43:42] 2025-12-15 15:42:20,515 | INFO     | . get job = 1 s
[2025-12-15 10:43:42] 2025-12-15 15:42:20,515 | INFO     | . initial setup = 12 s
[2025-12-15 10:43:42] 2025-12-15 15:42:20,515 | INFO     | . payload setup = 69 s
[2025-12-15 10:43:42] 2025-12-15 15:42:20,515 | INFO     | . stage-in = 1 s
[2025-12-15 10:43:42] 2025-12-15 15:42:20,530 | INFO     | . payload execution = 53197 s
[2025-12-15 10:43:42] 2025-12-15 15:42:20,530 | INFO     | . stage-out = 20 s
[2025-12-15 10:43:42] 2025-12-15 15:42:20,530 | INFO     | . log creation = 4 s
[2025-12-15 10:43:42] 2025-12-15 15:42:20,531 | INFO     | ..............................
[2025-12-15 10:43:42] 2025-12-15 15:42:21,326 | INFO     | time since job start (53473s) is within the limit (174528.0s)
[2025-12-15 10:43:42] 2025-12-15 15:42:21,663 | INFO     | 
[2025-12-15 10:43:42] 2025-12-15 15:42:21,663 | INFO     | job summary report
[2025-12-15 10:43:42] 2025-12-15 15:42:21,663 | INFO     | --------------------------------------------------
[2025-12-15 10:43:42] 2025-12-15 15:42:21,664 | INFO     | PanDA job id: 6930661649
[2025-12-15 10:43:42] 2025-12-15 15:42:21,664 | INFO     | task id: 47898878
[2025-12-15 10:43:42] 2025-12-15 15:42:21,664 | INFO     | errors: (none)
[2025-12-15 10:43:42] 2025-12-15 15:42:21,664 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 10:43:42] 2025-12-15 15:42:21,665 | INFO     | pilot state: finished 
[2025-12-15 10:43:42] 2025-12-15 15:42:21,665 | INFO     | transexitcode: 0
[2025-12-15 10:43:42] 2025-12-15 15:42:21,665 | INFO     | exeerrorcode: 0
[2025-12-15 10:43:42] 2025-12-15 15:42:21,665 | INFO     | exeerrordiag: 
[2025-12-15 10:43:42] 2025-12-15 15:42:21,665 | INFO     | exitcode: 0
[2025-12-15 10:43:42] 2025-12-15 15:42:21,666 | INFO     | exitmsg: OK
[2025-12-15 10:43:42] 2025-12-15 15:42:21,666 | INFO     | cpuconsumptiontime: 111057 s
[2025-12-15 10:43:42] 2025-12-15 15:42:21,666 | INFO     | nevents: 400
[2025-12-15 10:43:42] 2025-12-15 15:42:21,666 | INFO     | neventsw: 0
[2025-12-15 10:43:42] 2025-12-15 15:42:21,687 | INFO     | pid: 3383213
[2025-12-15 10:43:42] 2025-12-15 15:42:21,687 | INFO     | pgrp: 3383213
[2025-12-15 10:43:42] 2025-12-15 15:42:21,687 | INFO     | corecount: 8
[2025-12-15 10:43:42] 2025-12-15 15:42:21,688 | INFO     | event service: False
[2025-12-15 10:43:42] 2025-12-15 15:42:21,688 | INFO     | sizes: {0: 2283064, 1: 2283665, 2: 2283749, 4: 2283777, 5: 2283805, 6: 2284032, 7: 2284188, 19: 2284216, 32: 2284244, 45: 2284272, 60: 2284502, 62: 2284870, 71: 22
[2025-12-15 10:43:42] 2025-12-15 15:42:21,688 | INFO     | --------------------------------------------------
[2025-12-15 10:43:42] 2025-12-15 15:42:21,688 | INFO     | 
[2025-12-15 10:43:42] 2025-12-15 15:42:21,689 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-15 10:43:42] 2025-12-15 15:42:21,952 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,953 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,953 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,954 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,954 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,954 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,954 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,954 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,955 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,955 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:21,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:22,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:22,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:22,008 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:22,008 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 10:43:42] 2025-12-15 15:42:22,008 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:22,008 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 10:43:42] 2025-12-15 15:42:22,009 | INFO     | job 6930661649 has completed (purged errors)
[2025-12-15 10:43:42] 2025-12-15 15:42:22,009 | INFO     | overall cleanup function is called
[2025-12-15 10:43:42] 2025-12-15 15:42:23,065 | INFO     | --- collectZombieJob: --- 10, [3383213]
[2025-12-15 10:43:42] 2025-12-15 15:42:23,065 | INFO     | zombie collector waiting for pid 3383213
[2025-12-15 10:43:42] 2025-12-15 15:42:23,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 10:43:42] 2025-12-15 15:42:23,066 | INFO     | collected zombie processes
[2025-12-15 10:43:42] 2025-12-15 15:42:23,066 | INFO     | will attempt to kill all subprocesses of pid=3383213
[2025-12-15 10:43:42] 2025-12-15 15:42:36,701 | INFO     | process IDs to be killed: [3383213] (in reverse order)
[2025-12-15 10:43:42] 2025-12-15 15:42:37,340 | INFO     | PID=3360871 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-15 10:43:42] 2025-12-15 15:42:37,375 | INFO     | .. there are 45 such processes running
[2025-12-15 10:43:42] 2025-12-15 15:42:39,444 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 10:43:42] 2025-12-15 15:42:39,461 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 10:43:42] 2025-12-15 15:42:40,099 | INFO     | did not find any defunct processes belonging to 3383213
[2025-12-15 10:43:42] 2025-12-15 15:42:40,692 | INFO     | did not find any defunct processes belonging to 3383213
[2025-12-15 10:43:42] 2025-12-15 15:42:40,693 | INFO     | ready for new job
[2025-12-15 10:43:42] 2025-12-15 15:42:40,693 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 10:43:42] 2025-12-15 15:42:40,734 | INFO     | ***************************************
[2025-12-15 10:43:42] 2025-12-15 15:42:40,734 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 10:43:42] 2025-12-15 15:42:40,735 | INFO     | ***************************************
[2025-12-15 10:43:42] 2025-12-15 15:42:40,735 | INFO     | 
[2025-12-15 10:43:42] 2025-12-15 15:42:40,824 | INFO     | architecture information:
[2025-12-15 10:43:42] 2025-12-15 15:42:40,826 | INFO     | executing command: cat /etc/os-release
[2025-12-15 10:43:42] 2025-12-15 15:42:40,915 | INFO     | cat /etc/os-release:
[2025-12-15 10:43:42] NAME="CentOS Linux"
[2025-12-15 10:43:42] VERSION="7 (Core)"
[2025-12-15 10:43:42] ID="centos"
[2025-12-15 10:43:42] ID_LIKE="rhel fedora"
[2025-12-15 10:43:42] VERSION_ID="7"
[2025-12-15 10:43:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 10:43:42] ANSI_COLOR="0;31"
[2025-12-15 10:43:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 10:43:42] HOME_URL="https://www.centos.org/"
[2025-12-15 10:43:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 10:43:42] 
[2025-12-15 10:43:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 10:43:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 10:43:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 10:43:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 10:43:42] 
[2025-12-15 10:43:42] 2025-12-15 15:42:40,916 | INFO     | ***************************************
[2025-12-15 10:43:42] 2025-12-15 15:42:41,420 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-15 10:43:42] 2025-12-15 15:42:41,540 | INFO     | sufficient remaining disk space (93899980800 B)
[2025-12-15 10:43:42] 2025-12-15 15:42:41,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 10:43:42] 2025-12-15 15:42:41,541 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 10:43:42] 2025-12-15 15:42:41,541 | INFO     | update_server=False
[2025-12-15 10:43:42] 2025-12-15 15:42:41,542 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 10:43:42] 2025-12-15 15:42:41,870 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-15 10:43:42] 2025-12-15 15:42:41,870 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-15 10:43:42] 2025-12-15 15:42:41,871 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 10:43:42] 2025-12-15 15:42:41,871 | INFO     | will abort loop
[2025-12-15 10:43:42] 2025-12-15 15:42:41,902 | INFO     | all payload control threads have been joined
[2025-12-15 10:43:42] 2025-12-15 15:42:42,003 | INFO     | all job control threads have been joined
[2025-12-15 10:43:42] 2025-12-15 15:42:42,301 | INFO     | all data control threads have been joined
[2025-12-15 10:43:42] 2025-12-15 15:42:42,569 | INFO     | [job] retrieve thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:42,634 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:42,798 | INFO     | [payload] validate_post thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:42,801 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 10:43:42] 2025-12-15 15:42:42,846 | INFO     | [data] copytool_in thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:42,854 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:42,877 | INFO     | [job] job monitor thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:42,908 | INFO     | [payload] control thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:43,009 | INFO     | [job] control thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:43,301 | INFO     | [payload] failed_post thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:43,302 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:43,303 | INFO     | [job] validate thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:43,307 | INFO     | [data] control thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:43,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 10:43:42] 2025-12-15 15:42:43,405 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:44,330 | INFO     | [job] queue monitor thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:44,808 | INFO     | [data] copytool_out thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:44,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 10:43:42] 2025-12-15 15:42:46,698 | INFO     | [monitor] cgroup control has ended
[2025-12-15 10:43:42] 2025-12-15 15:42:49,040 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 10:43:42] 2025-12-15 15:42:50,328 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140316065466176)>', '<ExcThread(monitor, started 140315423921920)>']
[2025-12-15 10:43:42] 2025-12-15 15:42:55,390 | INFO     | all workflow threads have been joined
[2025-12-15 10:43:42] 2025-12-15 15:42:55,390 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 10:43:42] 2025-12-15 15:42:55,391 | INFO     | traces error code: 0
[2025-12-15 10:43:42] 2025-12-15 15:42:55,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 10:43:42] 2025-12-15 15:43:18,511 | INFO     | PID=3360871 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 10:43:42] 2025-12-15 15:43:18,522 | INFO     | .. there are 45 such processes running
[2025-12-15 10:43:42] 2025-12-15 15:43:18,524 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 10:43:42] 2025-12-15 15:43:18,525 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 10:43:42] 2025-12-15 15:43:18,525 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 10:43:42] 2025-12-15 15:43:18,525 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 10:43:42] 2025-12-15 15:43:18,525 | INFO     | [monitor] control thread has ended
[2025-12-15 10:43:42] 2025-12-15 15:43:20,372 [wrapper] ==== pilot stdout END ====
[2025-12-15 10:43:42] 2025-12-15 15:43:20,379 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 10:43:42] 2025-12-15 15:43:20,385 [wrapper] pilotpid: 3360871
[2025-12-15 10:43:42] 2025-12-15 15:43:20,391 [wrapper] Pilot exit status: 0
[2025-12-15 10:43:42] 2025-12-15 15:43:20,506 [wrapper] pandaids: 6930661649
[2025-12-15 10:43:42] 2025-12-15 15:43:22,138 [wrapper] cleanup supervisor_pilot 2732274 3360872
[2025-12-15 10:43:42] 2025-12-15 15:43:22,175 [wrapper] Test setup, not cleaning
[2025-12-15 10:43:42] 2025-12-15 15:43:22,221 [wrapper] apfmon messages muted
[2025-12-15 10:43:42] 2025-12-15 15:43:22,252 [wrapper] ==== wrapper stdout END ====
[2025-12-15 10:43:42] 2025-12-15 15:43:22,284 [wrapper] ==== wrapper stderr END ====
[2025-12-15 10:43:42]  *** Error codes and diagnostics ***
[2025-12-15 10:43:42]     "exeErrorCode": 0,
[2025-12-15 10:43:42]     "exeErrorDiag": "",
[2025-12-15 10:43:42]     "pilotErrorCode": 0,
[2025-12-15 10:43:42]     "pilotErrorDiag": "",
[2025-12-15 10:43:43]  *** Listing of results directory ***
[2025-12-15 10:43:43] total 380196
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas    579449 Dec 14 10:56 pilot3.tar.gz
[2025-12-15 10:43:43] -rwx------. 1 boincer umatlas     36322 Dec 14 10:57 runpilot2-wrapper.sh
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas      5112 Dec 14 10:58 queuedata.json
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas       100 Dec 14 19:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 10:43:43] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 14 19:49 run_atlas
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas       105 Dec 14 19:49 job.xml
[2025-12-15 10:43:43] -rw-r--r--. 2 boincer umatlas 198192435 Dec 14 19:49 EVNT.47898875._000034.pool.root.1
[2025-12-15 10:43:43] drwxrwx--x. 2 boincer umatlas      4096 Dec 14 19:49 shared
[2025-12-15 10:43:43] -rw-r--r--. 2 boincer umatlas    592387 Dec 14 19:49 input.tar.gz
[2025-12-15 10:43:43] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 19:49 start_atlas.sh
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas         0 Dec 14 19:49 boinc_lockfile
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas      2499 Dec 14 19:49 pandaJob.out
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas        57 Dec 14 19:49 setup.sh.local
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas    991024 Dec 14 19:50 agis_schedconf.cvmfs.json
[2025-12-15 10:43:43] drwx------. 5 boincer umatlas      4096 Dec 14 19:51 pilot3
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas      6879 Dec 15 10:36 init_data.xml
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas 175619895 Dec 15 10:37 HITS.47898878._001877.pool.root.1
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas       532 Dec 15 10:37 boinc_task_state.xml
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas      1046 Dec 15 10:40 memory_monitor_summary.json
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas   1516240 Dec 15 10:41 agis_ddmendpoints.agis.ALL.json
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas    848815 Dec 15 10:41 log.47898878._001877.job.log.tgz.1
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas      7836 Dec 15 10:42 heartbeat.json
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas        95 Dec 15 10:43 pilot_heartbeat.json
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas       823 Dec 15 10:43 pilotlog.txt
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas   4950078 Dec 15 10:43 log.47898878._001877.job.log.1
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas       357 Dec 15 10:43 output.list
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas       620 Dec 15 10:43 runtime_log
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas   5816320 Dec 15 10:43 result.tar.gz
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas      9353 Dec 15 10:43 runtime_log.err
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas       661 Dec 15 10:43 PE5LDmIe3o8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGtVKDmzkVILm.diag
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas        29 Dec 15 10:43 wrapper_checkpoint.txt
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas      8192 Dec 15 10:43 boinc_mmap_file
[2025-12-15 10:43:43] -rw-r--r--. 1 boincer umatlas     21276 Dec 15 10:43 stderr.txt
[2025-12-15 10:43:43] HITS file was successfully produced:
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas 175619895 Dec 15 10:37 shared/HITS.pool.root.1
[2025-12-15 10:43:43]  *** Contents of shared directory: ***
[2025-12-15 10:43:43] total 371336
[2025-12-15 10:43:43] -rw-r--r--. 2 boincer umatlas 198192435 Dec 14 19:49 ATLAS.root_0
[2025-12-15 10:43:43] -rw-r--r--. 2 boincer umatlas    592387 Dec 14 19:49 input.tar.gz
[2025-12-15 10:43:43] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 19:49 start_atlas.sh
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas 175619895 Dec 15 10:37 HITS.pool.root.1
[2025-12-15 10:43:43] -rw-------. 1 boincer umatlas   5816320 Dec 15 10:43 result.tar.gz
10:43:44 (3354257): run_atlas exited; CPU time 116618.702672
10:43:44 (3354257): called boinc_finish(0)

</stderr_txt>
]]>

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