Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-19 19:15:00 (47884): vboxwrapper version 26210
2025-12-19 19:15:00 (47884): BOINC client version: 8.2.8
2025-12-19 19:15:00 (47884): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-12-19 19:15:00 (47884): Successfully copied 'init_data.xml' to the shared directory.
2025-12-19 19:15:01 (47884): Create VM. (boinc_f94cd31e5b34fee2, slot#0)
2025-12-19 19:15:01 (47884): Setting Memory Size for VM. (4800MB)
2025-12-19 19:15:01 (47884): Setting CPU Count for VM. (8)
2025-12-19 19:15:02 (47884): Setting Chipset Options for VM.
2025-12-19 19:15:02 (47884): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-19 19:15:02 (47884): Setting Boot Options for VM.
2025-12-19 19:15:03 (47884): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-19 19:15:03 (47884): Enabling VM Network Access.
2025-12-19 19:15:03 (47884): Disabling USB Support for VM.
2025-12-19 19:15:04 (47884): Disabling COM Port Support for VM.
2025-12-19 19:15:04 (47884): Disabling LPT Port Support for VM.
2025-12-19 19:15:04 (47884): Disabling Audio Support for VM.
2025-12-19 19:15:04 (47884): Disabling Clipboard Support for VM.
2025-12-19 19:15:05 (47884): Disabling Drag and Drop Support for VM.
2025-12-19 19:15:05 (47884): Adding storage controller(s) to VM.
2025-12-19 19:15:05 (47884): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-19 19:15:07 (47884): Adding VirtualBox Guest Additions to VM.
2025-12-19 19:15:07 (47884): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-19 19:15:08 (47884): forwarding host port 50291 to guest port 80
2025-12-19 19:15:08 (47884): Enabling remote desktop for VM.
2025-12-19 19:15:09 (47884): Enabling shared directory for VM.
2025-12-19 19:15:09 (47884): Starting VM using VBoxManage interface. (boinc_f94cd31e5b34fee2, slot#0)
2025-12-19 19:15:17 (47884): Successfully started VM. (PID = '43536')
2025-12-19 19:15:17 (47884): Reporting VM Process ID to BOINC.
2025-12-19 19:15:17 (47884): Guest Log: BIOS: VirtualBox 7.2.0_RC1
2025-12-19 19:15:17 (47884): Guest Log: CPUID EDX: 0x178bfbff
2025-12-19 19:15:17 (47884): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-19 19:15:17 (47884): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-19 19:15:17 (47884): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-19 19:15:17 (47884): Detected: Web Application Enabled (http://localhost:50291)
2025-12-19 19:15:17 (47884): Detected: Remote Desktop Enabled (localhost:50293)
2025-12-19 19:15:17 (47884): Preference change detected
2025-12-19 19:15:17 (47884): Setting CPU throttle for VM. (70%)
2025-12-19 19:15:17 (47884): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-19 19:15:19 (47884): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-19 19:15:19 (47884): Guest Log: BIOS: Booting from Hard Disk...
2025-12-19 19:15:23 (47884): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-19 19:15:23 (47884): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-19 19:15:23 (47884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-19 19:15:28 (47884): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-19 19:15:28 (47884): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-19 19:15:36 (47884): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-19 19:15:36 (47884): Guest Log: 00:00:00.000184 main     Log opened 2025-12-19T19:15:34.202201000Z
2025-12-19 19:15:36 (47884): Guest Log: 00:00:00.000299 main     OS Product: Linux
2025-12-19 19:15:36 (47884): Guest Log: 00:00:00.000340 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-19 19:15:36 (47884): Guest Log: 00:00:00.000374 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-19 19:15:36 (47884): Guest Log: 00:00:00.000410 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-19 19:15:36 (47884): Guest Log: 00:00:00.000411 main     Process ID: 1371
2025-12-19 19:15:36 (47884): Guest Log: 00:00:00.000411 main     Package type: LINUX_64BITS_GENERIC
2025-12-19 19:15:36 (47884): Guest Log: 00:00:00.001226 main     5.2.32 r132073 started. Verbose level = 0
2025-12-19 19:15:36 (47884): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-19 19:15:36 (47884): Guest Log: [INFO] Mounting shared directory
2025-12-19 19:15:36 (47884): Guest Log: [INFO] Checking for init_data.xml
2025-12-19 19:15:39 (47884): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-19 19:15:39 (47884): Guest Log: [INFO] Detected branch: prod
2025-12-19 19:15:39 (47884): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-19 19:15:39 (47884): Guest Log: Copying input files
2025-12-19 19:15:41 (47884): Guest Log: Copied input files into RunAtlas.
2025-12-19 19:15:41 (47884): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-19 19:15:41 (47884): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-19 19:15:41 (47884): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-19 19:15:41 (47884): Guest Log: Further information can be found at the LHC@home message board.
2025-12-19 19:15:46 (47884): Guest Log: 00:00:10.008420 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 986 720 000ns (GuestNow=1 766 168 145 218 315 000 ns GuestLast=1 766 171 734 205 035 000 ns fSetTimeLastLoop=true )
2025-12-19 19:16:09 (47884): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-19 19:16:09 (47884): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-19 19:16:09 (47884): Guest Log: 2.6.3.0 1646 0 32216 154198 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-12-19 19:16:17 (47884): Guest Log: copied the webapp to /var/www
2025-12-19 19:16:17 (47884): Guest Log: ATHENA_PROC_NUMBER=8
2025-12-19 19:16:17 (47884): Guest Log: ATHENA_CORE_NUMBER=8
2025-12-19 19:16:17 (47884): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-19 19:16:17 (47884): Guest Log:  *** Starting ATLAS job. (PandaID=6930661521 taskID=47898878) ***
2025-12-19 20:55:17 (47884): Status Report: Elapsed Time: '6000.000000'
2025-12-19 20:55:17 (47884): Status Report: CPU Time: '33568.890625'
2025-12-19 21:09:34 (47884): Guest Log:  *** Job finished ***
2025-12-19 21:09:34 (47884): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:20,856 | INFO     | all workflow threads have been joined
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:20,856 | INFO     | end of generic workflow (traces error code: 0)
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:20,857 | INFO     | traces error code: 0
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:20,857 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,572 | INFO     | PID=6082 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,573 | INFO     | found 0 job(s) in 20 queues
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,573 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,573 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,573 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,573 | INFO     | [monitor] control thread has ended
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,666 [wrapper] ==== pilot stdout END ====
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,673 [wrapper] ==== wrapper stdout RESUME ====
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,678 [wrapper] pilotpid: 6082
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,683 [wrapper] Pilot exit status: 0
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,757 [wrapper] pandaids: 6930661521
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,789 [wrapper] cleanup supervisor_pilot  3665 6083
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,802 [wrapper] Test setup, not cleaning
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,808 [wrapper] apfmon messages muted
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,814 [wrapper] ==== wrapper stdout END ====
2025-12-19 21:09:34 (47884): Guest Log: 2025-12-19 20:09:32,819 [wrapper] ==== wrapper stderr END ====
2025-12-19 21:09:34 (47884): Guest Log:  *** Error codes and diagnostics ***
2025-12-19 21:09:34 (47884): Guest Log:     "exeErrorCode": 0,
2025-12-19 21:09:34 (47884): Guest Log:     "exeErrorDiag": "",
2025-12-19 21:09:34 (47884): Guest Log:     "pilotErrorCode": 0,
2025-12-19 21:09:34 (47884): Guest Log:     "pilotErrorDiag": "",
2025-12-19 21:09:34 (47884): Guest Log:  *** Listing of results directory ***
2025-12-19 21:09:34 (47884): Guest Log: total 176808
2025-12-19 21:09:34 (47884): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Dec 14 15:56 pilot3.tar.gz
2025-12-19 21:09:34 (47884): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Dec 14 15:56 queuedata.json
2025-12-19 21:09:34 (47884): Guest Log: -rwx------. 1 atlas atlas     36322 Dec 14 15:56 runpilot2-wrapper.sh
2025-12-19 21:09:34 (47884): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Dec 19 18:15 start_atlas.sh
2025-12-19 21:09:34 (47884): Guest Log: -rwxr-xr-x. 1 atlas atlas    592386 Dec 19 18:15 input.tar.gz
2025-12-19 21:09:34 (47884): Guest Log: -rwxr-xr-x. 1 atlas atlas      8624 Dec 19 18:15 init_data.xml
2025-12-19 21:09:34 (47884): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec 19 18:15 EVNT.47898875._000069.pool.root.1 -> /data/./ATLAS.root_0
2025-12-19 21:09:34 (47884): Guest Log: -rw-r--r--. 1 atlas atlas      2499 Dec 19 18:16 pandaJob.out
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas    988154 Dec 19 18:17 agis_schedconf.cvmfs.json
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec 19 18:17 agis_ddmendpoints.agis.ALL.json
2025-12-19 21:09:34 (47884): Guest Log: drwx------. 5 atlas atlas      4096 Dec 19 18:17 pilot3
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas 174727489 Dec 19 20:08 HITS.47898878._001749.pool.root.1
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas      1027 Dec 19 20:08 memory_monitor_summary.json
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas    362124 Dec 19 20:08 log.47898878._001749.job.log.tgz.1
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas      7782 Dec 19 20:08 heartbeat.json
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas        95 Dec 19 20:09 pilot_heartbeat.json
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas       744 Dec 19 20:09 pilotlog.txt
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas    877893 Dec 19 20:09 log.47898878._001749.job.log.1
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas       357 Dec 19 20:09 output.list
2025-12-19 21:09:34 (47884): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec 19 20:09 runtime_log
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas   1259520 Dec 19 20:09 result.tar.gz
2025-12-19 21:09:34 (47884): Guest Log: -rw-r--r--. 1 atlas atlas      8752 Dec 19 20:09 runtime_log.err
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas       655 Dec 19 20:09 LxyKDmLd3o8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNaRKDm5QfqSm.diag
2025-12-19 21:09:34 (47884): Guest Log: Looking for outputfile HITS.47898878._001749.pool.root.1
2025-12-19 21:09:34 (47884): Guest Log: HITS file was successfully produced
2025-12-19 21:09:34 (47884): Guest Log: -rw-------. 1 atlas atlas 174727489 Dec 19 20:08 /home/atlas/RunAtlas/HITS.47898878._001749.pool.root.1
2025-12-19 21:09:35 (47884): Guest Log: Successfully finished the ATLAS job!
2025-12-19 21:09:35 (47884): Guest Log: Copying the results back to the shared directory!
2025-12-19 21:09:35 (47884): Guest Log:  *** Contents of shared directory: ***
2025-12-19 21:09:35 (47884): Guest Log: total 323124
2025-12-19 21:09:35 (47884): Guest Log: -rwxrwxrwx. 1 root root 198233223 Dec 19 18:14 ATLAS.root_0
2025-12-19 21:09:35 (47884): Guest Log: -rwxrwxrwx. 1 root root 174727489 Dec 19 20:09 HITS.pool.root.1
2025-12-19 21:09:35 (47884): Guest Log: -rwxrwxrwx. 1 root root      8624 Dec 19 18:14 init_data.xml
2025-12-19 21:09:35 (47884): Guest Log: -rwxrwxrwx. 1 root root    592386 Dec 14 20:23 input.tar.gz
2025-12-19 21:09:35 (47884): Guest Log: -rwxrwxrwx. 1 root root   1259520 Dec 19 20:09 result.tar.gz
2025-12-19 21:09:35 (47884): Guest Log: -rwxrwxrwx. 1 root root     15847 Dec 14 20:23 start_atlas.sh
2025-12-19 21:09:35 (47884): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-19 21:09:35 (47884): VM Completion File Detected.
2025-12-19 21:09:35 (47884): Powering off VM.
2025-12-19 21:09:36 (47884): Successfully stopped VM.
2025-12-19 21:09:36 (47884): Deregistering VM. (boinc_f94cd31e5b34fee2, slot#0)
2025-12-19 21:09:36 (47884): Removing network bandwidth throttle group from VM.
2025-12-19 21:09:37 (47884): Removing VM from VirtualBox.
2025-12-19 21:09:42 (47884): called boinc_finish(0)

</stderr_txt>
]]>

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