Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:54:32 (2599438): wrapper (7.7.26015): starting
14:54:32 (2599438): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 14:54:32] Arguments: --nthreads 4
[2025-12-16 14:54:32] Threads: 4
[2025-12-16 14:54:32] Checking for CVMFS
[2025-12-16 14:54:32] No cvmfs_config command found, will try listing directly
[2025-12-16 14:54:32] CVMFS is ok
[2025-12-16 14:54:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 14:54:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 14:54:32] Further information can be found at the LHC@home message board.
[2025-12-16 14:54:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 14:54:32] Checking for apptainer binary...
[2025-12-16 14:54:32] which: no apptainer in ((null))
[2025-12-16 14:54:32] apptainer is not installed, using version from CVMFS
[2025-12-16 14:54:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 14:54:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2025-12-16 14:54:32] apptainer works
[2025-12-16 14:54:32] Set ATHENA_PROC_NUMBER=4
[2025-12-16 14:54:32] Set ATHENA_CORE_NUMBER=4
[2025-12-16 14:54:32] Starting ATLAS job with PandaID=6930659830
[2025-12-16 14:54:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 19:28:28]  *** The last 200 lines of the pilot log: ***
[2025-12-16 19:28:28] 2025-12-16 17:45:59,303 | INFO     | executing command: lscpu
[2025-12-16 19:28:28] 2025-12-16 17:45:59,345 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-16 19:28:28] 2025-12-16 17:46:00,344 | INFO     | monitor loop #1006: job 0:6930659830 is in state 'finished'
[2025-12-16 19:28:28] 2025-12-16 17:46:00,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 19:28:28] 2025-12-16 17:46:00,512 | INFO     | time since job start (13877s) is within the limit (174528.0s)
[2025-12-16 19:28:28] 2025-12-16 17:46:02,518 | INFO     | time since job start (13879s) is within the limit (174528.0s)
[2025-12-16 19:28:28] 2025-12-16 17:46:02,848 | INFO     | monitor loop #1007: job 0:6930659830 is in state 'finished'
[2025-12-16 19:28:28] 2025-12-16 17:46:02,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 19:28:28] 2025-12-16 17:46:04,523 | INFO     | time since job start (13881s) is within the limit (174528.0s)
[2025-12-16 19:28:28] 2025-12-16 17:46:04,864 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-16 19:28:28] 2025-12-16 17:46:04,871 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2489.3480499999996
[2025-12-16 19:28:28] 2025-12-16 17:46:04,879 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6930659830/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 19:28:28] 2025-12-16 17:46:04,880 | INFO     | extracted standard info from prmon json
[2025-12-16 19:28:28] 2025-12-16 17:46:04,880 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 19:28:28] 2025-12-16 17:46:04,880 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 19:28:28] 2025-12-16 17:46:04,881 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 19:28:28] 2025-12-16 17:46:04,881 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 19:28:28] 2025-12-16 17:46:04,886 | INFO     | fitting pss+swap vs Time
[2025-12-16 19:28:28] 2025-12-16 17:46:04,886 | INFO     | sum of square deviations: 3627000098.0
[2025-12-16 19:28:28] 2025-12-16 17:46:04,888 | INFO     | sum of deviations: 11341053937.000011
[2025-12-16 19:28:28] 2025-12-16 17:46:04,888 | INFO     | mean x: 1765900202.0
[2025-12-16 19:28:28] 2025-12-16 17:46:04,888 | INFO     | mean y: 2338747.2466960354
[2025-12-16 19:28:28] 2025-12-16 17:46:04,889 | INFO     | intersect: -5519351050.689784
[2025-12-16 19:28:28] 2025-12-16 17:46:04,889 | INFO     | chi2: 1.2967326153175083
[2025-12-16 19:28:28] 2025-12-16 17:46:04,890 | INFO     | sum of square deviations: 3392567795.5
[2025-12-16 19:28:28] 2025-12-16 17:46:04,891 | INFO     | sum of deviations: 10829989074.499992
[2025-12-16 19:28:28] 2025-12-16 17:46:04,891 | INFO     | mean x: 1765900049.5
[2025-12-16 19:28:28] 2025-12-16 17:46:04,892 | INFO     | mean y: 2338414.7342342343
[2025-12-16 19:28:28] 2025-12-16 17:46:04,892 | INFO     | intersect: -5634889607.093811
[2025-12-16 19:28:28] 2025-12-16 17:46:04,892 | INFO     | chi2: 1.297014925662442
[2025-12-16 19:28:28] 2025-12-16 17:46:04,892 | INFO     | current chi2=1.297014925662442 (change=-0.021770898765010288 %)
[2025-12-16 19:28:28] 2025-12-16 17:46:04,892 | INFO     | right removable region: 221
[2025-12-16 19:28:28] 2025-12-16 17:46:04,893 | INFO     | sum of square deviations: 3392567795.5
[2025-12-16 19:28:28] 2025-12-16 17:46:04,895 | INFO     | sum of deviations: -11821454099.5
[2025-12-16 19:28:28] 2025-12-16 17:46:04,895 | INFO     | mean x: 1765900354.5
[2025-12-16 19:28:28] 2025-12-16 17:46:04,895 | INFO     | mean y: 2353575.40990991
[2025-12-16 19:28:28] 2025-12-16 17:46:04,895 | INFO     | intersect: 6155660227.881943
[2025-12-16 19:28:28] 2025-12-16 17:46:04,895 | INFO     | chi2: 0.07325174482755496
[2025-12-16 19:28:28] 2025-12-16 17:46:04,896 | INFO     | current chi2=0.07325174482755496 (change=94.35105248666711 %)
[2025-12-16 19:28:28] 2025-12-16 17:46:04,896 | INFO     | sum of square deviations: 3168461268.0
[2025-12-16 19:28:28] 2025-12-16 17:46:04,898 | INFO     | sum of deviations: -6887471936.000001
[2025-12-16 19:28:28] 2025-12-16 17:46:04,898 | INFO     | mean x: 1765900507.0
[2025-12-16 19:28:28] 2025-12-16 17:46:04,898 | INFO     | mean y: 2350219.2258064514
[2025-12-16 19:28:28] 2025-12-16 17:46:04,898 | INFO     | intersect: 3840992751.0336695
[2025-12-16 19:28:28] 2025-12-16 17:46:04,899 | INFO     | chi2: 0.056510504217608365
[2025-12-16 19:28:28] 2025-12-16 17:46:04,899 | INFO     | current chi2=0.056510504217608365 (change=22.85439159075031 %)
[2025-12-16 19:28:28] 2025-12-16 17:46:04,899 | INFO     | left removable region: 20
[2025-12-16 19:28:28] 2025-12-16 17:46:04,899 | INFO     | sum of square deviations: 2518000700.0
[2025-12-16 19:28:28] 2025-12-16 17:46:04,901 | INFO     | sum of deviations: 4134682113.9999995
[2025-12-16 19:28:28] 2025-12-16 17:46:04,901 | INFO     | mean x: 1765900629.0
[2025-12-16 19:28:28] 2025-12-16 17:46:04,901 | INFO     | mean y: 2341491.6417910447
[2025-12-16 19:28:28] 2025-12-16 17:46:04,901 | INFO     | intersect: -2897354980.1771603
[2025-12-16 19:28:28] 2025-12-16 17:46:04,902 | INFO     | chi2: 0.0012212760991963298
[2025-12-16 19:28:28] 2025-12-16 17:46:04,902 | INFO     | current memory leak: 1.64 B/s (using 201 data points, chi2=0.00)
[2025-12-16 19:28:28] 2025-12-16 17:46:04,902 | INFO     | could have reported an average CPU frequency of 2537 MHz (11 samples)
[2025-12-16 19:28:28] 2025-12-16 17:46:04,903 | INFO     | ..............................
[2025-12-16 19:28:28] 2025-12-16 17:46:04,903 | INFO     | . Timing measurements:
[2025-12-16 19:28:28] 2025-12-16 17:46:04,903 | INFO     | . get job = 0 s
[2025-12-16 19:28:28] 2025-12-16 17:46:04,903 | INFO     | . initial setup = 1 s
[2025-12-16 19:28:28] 2025-12-16 17:46:04,903 | INFO     | . payload setup = 5 s
[2025-12-16 19:28:28] 2025-12-16 17:46:04,903 | INFO     | . stage-in = 0 s
[2025-12-16 19:28:28] 2025-12-16 17:46:04,903 | INFO     | . payload execution = 13843 s
[2025-12-16 19:28:28] 2025-12-16 17:46:04,904 | INFO     | . stage-out = 1 s
[2025-12-16 19:28:28] 2025-12-16 17:46:04,904 | INFO     | . log creation = 0 s
[2025-12-16 19:28:28] 2025-12-16 17:46:04,904 | INFO     | ..............................
[2025-12-16 19:28:28] 2025-12-16 17:46:05,012 | INFO     | 
[2025-12-16 19:28:28] 2025-12-16 17:46:05,012 | INFO     | job summary report
[2025-12-16 19:28:28] 2025-12-16 17:46:05,012 | INFO     | --------------------------------------------------
[2025-12-16 19:28:28] 2025-12-16 17:46:05,012 | INFO     | PanDA job id: 6930659830
[2025-12-16 19:28:28] 2025-12-16 17:46:05,012 | INFO     | task id: 47898878
[2025-12-16 19:28:28] 2025-12-16 17:46:05,012 | INFO     | errors: (none)
[2025-12-16 19:28:28] 2025-12-16 17:46:05,012 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | pilot state: finished 
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | transexitcode: 0
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | exeerrorcode: 0
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | exeerrordiag: 
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | exitcode: 0
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | exitmsg: OK
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | cpuconsumptiontime: 52950 s
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | nevents: 400
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | neventsw: 0
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | pid: 2611116
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | pgrp: 2611116
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | corecount: 4
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | event service: False
[2025-12-16 19:28:28] 2025-12-16 17:46:05,013 | INFO     | sizes: {0: 2283901, 1: 2283901, 4: 2284191, 11: 2284219, 13853: 2314595, 13855: 2323615, 13858: 2323799, 13866: 2323993}
[2025-12-16 19:28:28] 2025-12-16 17:46:05,014 | INFO     | --------------------------------------------------
[2025-12-16 19:28:28] 2025-12-16 17:46:05,014 | INFO     | 
[2025-12-16 19:28:28] 2025-12-16 17:46:05,014 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-12-16 19:28:28] 2025-12-16 17:46:05,030 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,030 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,030 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,030 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,031 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,031 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,031 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,031 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,031 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,031 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,031 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,031 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,032 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,032 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,032 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,032 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,032 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,032 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 19:28:28] 2025-12-16 17:46:05,032 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,032 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 19:28:28] 2025-12-16 17:46:05,033 | INFO     | job 6930659830 has completed (purged errors)
[2025-12-16 19:28:28] 2025-12-16 17:46:05,033 | INFO     | overall cleanup function is called
[2025-12-16 19:28:28] 2025-12-16 17:46:06,042 | INFO     | --- collectZombieJob: --- 10, [2611116]
[2025-12-16 19:28:28] 2025-12-16 17:46:06,042 | INFO     | zombie collector waiting for pid 2611116
[2025-12-16 19:28:28] 2025-12-16 17:46:06,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 19:28:28] 2025-12-16 17:46:06,042 | INFO     | collected zombie processes
[2025-12-16 19:28:28] 2025-12-16 17:46:06,043 | INFO     | will attempt to kill all subprocesses of pid=2611116
[2025-12-16 19:28:28] 2025-12-16 17:46:06,368 | INFO     | process IDs to be killed: [2611116] (in reverse order)
[2025-12-16 19:28:28] 2025-12-16 17:46:06,463 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 19:28:28] 2025-12-16 17:46:06,463 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 19:28:28] 2025-12-16 17:46:06,474 | INFO     | did not find any defunct processes belonging to 2611116
[2025-12-16 19:28:28] 2025-12-16 17:46:06,484 | INFO     | did not find any defunct processes belonging to 2611116
[2025-12-16 19:28:28] 2025-12-16 17:46:06,484 | INFO     | ready for new job
[2025-12-16 19:28:28] 2025-12-16 17:46:06,484 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 19:28:28] 2025-12-16 17:46:06,487 | INFO     | ***************************************
[2025-12-16 19:28:28] 2025-12-16 17:46:06,487 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 19:28:28] 2025-12-16 17:46:06,487 | INFO     | ***************************************
[2025-12-16 19:28:28] 2025-12-16 17:46:06,487 | INFO     | 
[2025-12-16 19:28:28] 2025-12-16 17:46:06,490 | INFO     | architecture information:
[2025-12-16 19:28:28] 2025-12-16 17:46:06,491 | INFO     | executing command: cat /etc/os-release
[2025-12-16 19:28:28] 2025-12-16 17:46:06,506 | INFO     | cat /etc/os-release:
[2025-12-16 19:28:28] NAME="CentOS Linux"
[2025-12-16 19:28:28] VERSION="7 (Core)"
[2025-12-16 19:28:28] ID="centos"
[2025-12-16 19:28:28] ID_LIKE="rhel fedora"
[2025-12-16 19:28:28] VERSION_ID="7"
[2025-12-16 19:28:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 19:28:28] ANSI_COLOR="0;31"
[2025-12-16 19:28:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 19:28:28] HOME_URL="https://www.centos.org/"
[2025-12-16 19:28:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 19:28:28] 
[2025-12-16 19:28:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 19:28:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 19:28:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 19:28:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 19:28:28] 
[2025-12-16 19:28:28] 2025-12-16 17:46:06,507 | INFO     | ***************************************
[2025-12-16 19:28:28] 2025-12-16 17:46:07,010 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-12-16 19:28:28] 2025-12-16 17:46:07,026 | INFO     | sufficient remaining disk space (1667126788096 B)
[2025-12-16 19:28:28] 2025-12-16 17:46:07,026 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 19:28:28] 2025-12-16 17:46:07,027 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 19:28:28] 2025-12-16 17:46:07,027 | INFO     | update_server=False
[2025-12-16 19:28:28] 2025-12-16 17:46:07,027 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 19:28:28] 2025-12-16 17:46:07,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:28:28] 2025-12-16 17:46:07,027 | INFO     | aborting loop
[2025-12-16 19:28:28] 2025-12-16 17:46:07,153 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 19:28:28] 2025-12-16 17:46:07,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 19:28:28] 2025-12-16 17:46:07,739 | INFO     | all job control threads have been joined
[2025-12-16 19:28:28] 2025-12-16 17:46:08,032 | INFO     | [job] retrieve thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:08,033 | INFO     | [job] job monitor thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:08,083 | INFO     | all data control threads have been joined
[2025-12-16 19:28:28] 2025-12-16 17:46:08,268 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:08,301 | INFO     | all payload control threads have been joined
[2025-12-16 19:28:28] 2025-12-16 17:46:08,440 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:08,743 | INFO     | [job] control thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:08,908 | INFO     | [payload] validate_post thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:08,915 | INFO     | [payload] failed_post thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:09,005 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:09,006 | INFO     | [data] copytool_in thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:09,089 | INFO     | [data] control thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:09,165 | INFO     | [data] copytool_out thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:09,184 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:09,242 | INFO     | [job] validate thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:09,306 | INFO     | [payload] control thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:10,022 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 19:28:28] 2025-12-16 17:46:11,027 | INFO     | [job] queue monitor thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:11,329 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 19:28:28] 2025-12-16 17:46:37,993 | INFO     | PID=2603440 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 19:28:28] 2025-12-16 17:46:37,994 | INFO     | .. there are 3 such processes running
[2025-12-16 19:28:28] 2025-12-16 17:46:37,995 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 19:28:28] 2025-12-16 17:46:37,995 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 19:28:28] 2025-12-16 17:46:37,995 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 19:28:28] 2025-12-16 17:47:06,486 | INFO     | [monitor] cgroup control has ended
[2025-12-16 19:28:28] 2025-12-16 17:47:06,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23304969295680)>', '<ExcThread(monitor, started 23304729491200)>']
[2025-12-16 19:28:28] 2025-12-16 17:47:07,130 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 19:28:28] 2025-12-16 17:47:07,130 | INFO     | [monitor] control thread has ended
[2025-12-16 19:28:28] 2025-12-16 17:47:11,674 | INFO     | all workflow threads have been joined
[2025-12-16 19:28:28] 2025-12-16 17:47:11,674 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 19:28:28] 2025-12-16 17:47:11,675 | INFO     | traces error code: 0
[2025-12-16 19:28:28] 2025-12-16 17:47:11,675 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 19:28:28] 2025-12-16 17:47:11,800 [wrapper] ==== pilot stdout END ====
[2025-12-16 19:28:28] 2025-12-16 17:47:11,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 19:28:28] 2025-12-16 17:47:11,804 [wrapper] pilotpid: 2603440
[2025-12-16 19:28:28] 2025-12-16 17:47:11,806 [wrapper] Pilot exit status: 0
[2025-12-16 19:28:28] 2025-12-16 17:47:11,817 [wrapper] pandaids: 6930659830
[2025-12-16 19:28:28] 2025-12-16 17:47:11,879 [wrapper] cleanup supervisor_pilot 2783598 2603441
[2025-12-16 19:28:28] 2025-12-16 17:47:11,882 [wrapper] Test setup, not cleaning
[2025-12-16 19:28:28] 2025-12-16 17:47:11,884 [wrapper] apfmon messages muted
[2025-12-16 19:28:28] 2025-12-16 17:47:11,887 [wrapper] ==== wrapper stdout END ====
[2025-12-16 19:28:28] 2025-12-16 17:47:11,889 [wrapper] ==== wrapper stderr END ====
[2025-12-16 19:28:28]  *** Error codes and diagnostics ***
[2025-12-16 19:28:28]     "exeErrorCode": 0,
[2025-12-16 19:28:28]     "exeErrorDiag": "",
[2025-12-16 19:28:28]     "pilotErrorCode": 0,
[2025-12-16 19:28:28]     "pilotErrorDiag": "",
[2025-12-16 19:28:28]  *** Listing of results directory ***
[2025-12-16 19:28:28] total 375256
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc    579449 Dec 14 16:56 pilot3.tar.gz
[2025-12-16 19:28:28] -rwx------ 1 boinc boinc     36322 Dec 14 16:56 runpilot2-wrapper.sh
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc      5112 Dec 14 16:56 queuedata.json
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc       100 Dec 16 14:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 19:28:28] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 14:54 run_atlas
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc       105 Dec 16 14:54 job.xml
[2025-12-16 19:28:28] -rw-r--r-- 2 boinc boinc 194496767 Dec 16 14:54 EVNT.47898875._000090.pool.root.1
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc      6425 Dec 16 14:54 init_data.xml
[2025-12-16 19:28:28] -rw-r--r-- 2 boinc boinc    592391 Dec 16 14:54 input.tar.gz
[2025-12-16 19:28:28] -rw-r--r-- 2 boinc boinc     15847 Dec 16 14:54 start_atlas.sh
[2025-12-16 19:28:28] drwxrwx--x 2 boinc boinc      4096 Dec 16 14:54 shared
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc         0 Dec 16 14:54 boinc_lockfile
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc      2498 Dec 16 14:54 pandaJob.out
[2025-12-16 19:28:28] -rw------- 1 boinc boinc    987355 Dec 16 14:54 agis_schedconf.cvmfs.json
[2025-12-16 19:28:28] drwx------ 5 boinc boinc      4096 Dec 16 14:54 pilot3
[2025-12-16 19:28:28] -rw------- 1 boinc boinc 181157862 Dec 16 18:45 HITS.47898878._001255.pool.root.1
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc       528 Dec 16 18:45 boinc_task_state.xml
[2025-12-16 19:28:28] -rw------- 1 boinc boinc      1035 Dec 16 18:45 memory_monitor_summary.json
[2025-12-16 19:28:28] -rw------- 1 boinc boinc   1516240 Dec 16 18:45 agis_ddmendpoints.agis.ALL.json
[2025-12-16 19:28:28] -rw------- 1 boinc boinc    388781 Dec 16 18:45 log.47898878._001255.job.log.tgz.1
[2025-12-16 19:28:28] -rw------- 1 boinc boinc      7823 Dec 16 18:46 heartbeat.json
[2025-12-16 19:28:28] -rw------- 1 boinc boinc        95 Dec 16 18:46 pilot_heartbeat.json
[2025-12-16 19:28:28] -rw------- 1 boinc boinc      4834 Dec 16 18:47 pilotlog.txt
[2025-12-16 19:28:28] -rw------- 1 boinc boinc   1961045 Dec 16 18:47 log.47898878._001255.job.log.1
[2025-12-16 19:28:28] -rw------- 1 boinc boinc       357 Dec 16 18:47 output.list
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc       620 Dec 16 18:47 runtime_log
[2025-12-16 19:28:28] -rw------- 1 boinc boinc   2365440 Dec 16 18:47 result.tar.gz
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc      9206 Dec 16 18:47 runtime_log.err
[2025-12-16 19:28:28] -rw------- 1 boinc boinc       666 Dec 16 18:47 oiELDmBd3o8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmepVKDmCFq4Rn.diag
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc        26 Dec 16 19:28 wrapper_checkpoint.txt
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc      8192 Dec 16 19:28 boinc_mmap_file
[2025-12-16 19:28:28] -rw-r--r-- 1 boinc boinc     21199 Dec 16 19:28 stderr.txt
[2025-12-16 19:28:28] HITS file was successfully produced:
[2025-12-16 19:28:28] -rw------- 1 boinc boinc 181157862 Dec 16 18:45 shared/HITS.pool.root.1
[2025-12-16 19:28:28]  *** Contents of shared directory: ***
[2025-12-16 19:28:28] total 369768
[2025-12-16 19:28:28] -rw-r--r-- 2 boinc boinc 194496767 Dec 16 14:54 ATLAS.root_0
[2025-12-16 19:28:28] -rw-r--r-- 2 boinc boinc    592391 Dec 16 14:54 input.tar.gz
[2025-12-16 19:28:28] -rw-r--r-- 2 boinc boinc     15847 Dec 16 14:54 start_atlas.sh
[2025-12-16 19:28:28] -rw------- 1 boinc boinc 181157862 Dec 16 18:45 HITS.pool.root.1
[2025-12-16 19:28:28] -rw------- 1 boinc boinc   2365440 Dec 16 18:47 result.tar.gz
19:28:29 (2599438): run_atlas exited; CPU time 53454.777704
19:28:29 (2599438): called boinc_finish(0)

</stderr_txt>
]]>

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