Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:01:28 (13901): wrapper (7.7.26015): starting
14:01:28 (13901): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 14:01:28] Arguments: --nthreads 12
[2025-12-14 14:01:28] Threads: 12
[2025-12-14 14:01:28] Checking for CVMFS
[2025-12-14 14:01:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 14:01:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 14:01:29] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 14:01:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 14:01:29] 2.11.2.0 3103 103970 95888 154004 1 57 17457215 20275200 1 130560 0 45573744 99.930 5447813 33078 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 14:01:29] CVMFS is ok
[2025-12-14 14:01:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 14:01:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 14:01:29] Further information can be found at the LHC@home message board.
[2025-12-14 14:01:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 14:01:29] Checking for apptainer binary...
[2025-12-14 14:01:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 14:01:29] Running /usr/bin/apptainer --version
[2025-12-14 14:01:29] apptainer version 1.3.2-1.el7
[2025-12-14 14:01:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 14:01:30] c-115-41.aglt2.org
[2025-12-14 14:01:30] apptainer works
[2025-12-14 14:01:30] Set ATHENA_PROC_NUMBER=12
[2025-12-14 14:01:30] Set ATHENA_CORE_NUMBER=12
[2025-12-14 14:01:30] Starting ATLAS job with PandaID=6929450516
[2025-12-14 14:01:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 15:28:01]  *** The last 200 lines of the pilot log: ***
[2025-12-14 15:28:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 15:28:01]  replicas=None
[2025-12-14 15:28:01]  scope=mc23_13p6TeV
[2025-12-14 15:28:01]  status=None
[2025-12-14 15:28:01]  status_code=0
[2025-12-14 15:28:01]  storage_token=
[2025-12-14 15:28:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929450516/log.47886933._003957.job.log.tgz.1
[2025-12-14 15:28:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/07/log.47886933._003957.job.log.tgz.1
[2025-12-14 15:28:01]  workdir=None
[2025-12-14 15:28:01] ]
[2025-12-14 15:28:01] 2025-12-14 20:27:20,403 | INFO     | transferring file log.47886933._003957.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929450516/log.47886933._003957.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 15:28:01] 2025-12-14 20:27:20,404 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929450516/log.47886933._003957.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._003957.job
[2025-12-14 15:28:01] 2025-12-14 20:27:20,424 | INFO     | adding to output.list: log.47886933._003957.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/07/log.47886933._003957.job.log.tg
[2025-12-14 15:28:01] 2025-12-14 20:27:20,425 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 15:28:01] 2025-12-14 20:27:20,426 | INFO     | summary of transferred files:
[2025-12-14 15:28:01] 2025-12-14 20:27:20,426 | INFO     |  -- lfn=log.47886933._003957.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 15:28:01] 2025-12-14 20:27:20,426 | INFO     | stage-out finished correctly
[2025-12-14 15:28:01] 2025-12-14 20:27:21,363 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 15:28:01] 2025-12-14 20:27:21,428 | INFO     | time since job start (5136s) is within the limit (174528.0s)
[2025-12-14 15:28:01] 2025-12-14 20:27:21,646 | INFO     | monitor loop #382: job 0:6929450516 is in state 'finished'
[2025-12-14 15:28:01] 2025-12-14 20:27:21,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 15:28:01] 2025-12-14 20:27:22,361 | INFO     | job 6929450516 has state=finished
[2025-12-14 15:28:01] 2025-12-14 20:27:22,362 | INFO     | preparing for final server update for job 6929450516 in state='finished'
[2025-12-14 15:28:01] 2025-12-14 20:27:22,362 | INFO     | this job has now completed (state=finished)
[2025-12-14 15:28:01] 2025-12-14 20:27:22,362 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 15:28:01] 2025-12-14 20:27:22,362 | INFO     | log transfer has been attempted: DONE
[2025-12-14 15:28:01] 2025-12-14 20:27:22,362 | INFO     | job 6929450516 has finished - writing final server update
[2025-12-14 15:28:01] 2025-12-14 20:27:22,363 | INFO     | total number of processed events: 400 (read)
[2025-12-14 15:28:01] 2025-12-14 20:27:22,363 | INFO     | executing command: lscpu
[2025-12-14 15:28:01] 2025-12-14 20:27:22,390 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 15:28:01] 2025-12-14 20:27:23,433 | INFO     | time since job start (5138s) is within the limit (174528.0s)
[2025-12-14 15:28:01] 2025-12-14 20:27:24,149 | INFO     | monitor loop #383: job 0:6929450516 is in state 'finished'
[2025-12-14 15:28:01] 2025-12-14 20:27:24,149 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 15:28:01] 2025-12-14 20:27:25,439 | INFO     | time since job start (5140s) is within the limit (174528.0s)
[2025-12-14 15:28:01] 2025-12-14 20:27:26,652 | INFO     | monitor loop #384: job 0:6929450516 is in state 'finished'
[2025-12-14 15:28:01] 2025-12-14 20:27:26,652 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 15:28:01] 2025-12-14 20:27:27,444 | INFO     | time since job start (5142s) is within the limit (174528.0s)
[2025-12-14 15:28:01] 2025-12-14 20:27:27,742 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 15:28:01] 2025-12-14 20:27:27,744 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1840.0
[2025-12-14 15:28:01] 2025-12-14 20:27:27,746 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929450516/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 15:28:01] 2025-12-14 20:27:27,746 | INFO     | extracted standard info from prmon json
[2025-12-14 15:28:01] 2025-12-14 20:27:27,746 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 15:28:01] 2025-12-14 20:27:27,746 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 15:28:01] 2025-12-14 20:27:27,747 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 15:28:01] 2025-12-14 20:27:27,747 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 15:28:01] 2025-12-14 20:27:27,748 | INFO     | fitting pss+swap vs Time
[2025-12-14 15:28:01] 2025-12-14 20:27:27,748 | INFO     | sum of square deviations: 141539398.0
[2025-12-14 15:28:01] 2025-12-14 20:27:27,749 | INFO     | sum of deviations: 698320070.0
[2025-12-14 15:28:01] 2025-12-14 20:27:27,749 | INFO     | mean x: 1765741556.0
[2025-12-14 15:28:01] 2025-12-14 20:27:27,749 | INFO     | mean y: 2679716.3636363638
[2025-12-14 15:28:01] 2025-12-14 20:27:27,749 | INFO     | intersect: -8709048497.90946
[2025-12-14 15:28:01] 2025-12-14 20:27:27,749 | INFO     | chi2: 0.02859594985652787
[2025-12-14 15:28:01] 2025-12-14 20:27:27,749 | INFO     | current memory leak: 4.93 B/s (using 77 data points, chi2=0.03)
[2025-12-14 15:28:01] 2025-12-14 20:27:27,749 | INFO     | could have reported an average CPU frequency of 2169 MHz (6 samples)
[2025-12-14 15:28:01] 2025-12-14 20:27:27,750 | INFO     | ..............................
[2025-12-14 15:28:01] 2025-12-14 20:27:27,750 | INFO     | . Timing measurements:
[2025-12-14 15:28:01] 2025-12-14 20:27:27,750 | INFO     | . get job = 0 s
[2025-12-14 15:28:01] 2025-12-14 20:27:27,750 | INFO     | . initial setup = 2 s
[2025-12-14 15:28:01] 2025-12-14 20:27:27,750 | INFO     | . payload setup = 6 s
[2025-12-14 15:28:01] 2025-12-14 20:27:27,750 | INFO     | . stage-in = 0 s
[2025-12-14 15:28:01] 2025-12-14 20:27:27,750 | INFO     | . payload execution = 5106 s
[2025-12-14 15:28:01] 2025-12-14 20:27:27,750 | INFO     | . stage-out = 0 s
[2025-12-14 15:28:01] 2025-12-14 20:27:27,750 | INFO     | . log creation = 0 s
[2025-12-14 15:28:01] 2025-12-14 20:27:27,750 | INFO     | ..............................
[2025-12-14 15:28:01] 2025-12-14 20:27:27,828 | INFO     | 
[2025-12-14 15:28:01] 2025-12-14 20:27:27,828 | INFO     | job summary report
[2025-12-14 15:28:01] 2025-12-14 20:27:27,828 | INFO     | --------------------------------------------------
[2025-12-14 15:28:01] 2025-12-14 20:27:27,828 | INFO     | PanDA job id: 6929450516
[2025-12-14 15:28:01] 2025-12-14 20:27:27,828 | INFO     | task id: 47886933
[2025-12-14 15:28:01] 2025-12-14 20:27:27,828 | INFO     | errors: (none)
[2025-12-14 15:28:01] 2025-12-14 20:27:27,829 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 15:28:01] 2025-12-14 20:27:27,829 | INFO     | pilot state: finished 
[2025-12-14 15:28:01] 2025-12-14 20:27:27,829 | INFO     | transexitcode: 0
[2025-12-14 15:28:01] 2025-12-14 20:27:27,829 | INFO     | exeerrorcode: 0
[2025-12-14 15:28:01] 2025-12-14 20:27:27,829 | INFO     | exeerrordiag: 
[2025-12-14 15:28:01] 2025-12-14 20:27:27,829 | INFO     | exitcode: 0
[2025-12-14 15:28:01] 2025-12-14 20:27:27,829 | INFO     | exitmsg: OK
[2025-12-14 15:28:01] 2025-12-14 20:27:27,829 | INFO     | cpuconsumptiontime: 47999 s
[2025-12-14 15:28:01] 2025-12-14 20:27:27,829 | INFO     | nevents: 400
[2025-12-14 15:28:01] 2025-12-14 20:27:27,829 | INFO     | neventsw: 0
[2025-12-14 15:28:01] 2025-12-14 20:27:27,830 | INFO     | pid: 24222
[2025-12-14 15:28:01] 2025-12-14 20:27:27,830 | INFO     | pgrp: 24222
[2025-12-14 15:28:01] 2025-12-14 20:27:27,830 | INFO     | corecount: 12
[2025-12-14 15:28:01] 2025-12-14 20:27:27,830 | INFO     | event service: False
[2025-12-14 15:28:01] 2025-12-14 20:27:27,830 | INFO     | sizes: {0: 2283965, 5: 2284227, 11: 2284283, 5117: 2310577, 5119: 2319575, 5120: 2319631, 5126: 2319953}
[2025-12-14 15:28:01] 2025-12-14 20:27:27,830 | INFO     | --------------------------------------------------
[2025-12-14 15:28:01] 2025-12-14 20:27:27,830 | INFO     | 
[2025-12-14 15:28:01] 2025-12-14 20:27:27,830 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 15:28:01] 2025-12-14 20:27:27,856 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,856 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,857 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,857 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,857 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,857 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,857 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,857 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,857 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,857 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,857 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,857 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,858 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,858 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,858 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,858 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,858 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,858 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 15:28:01] 2025-12-14 20:27:27,858 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,858 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 15:28:01] 2025-12-14 20:27:27,858 | INFO     | job 6929450516 has completed (purged errors)
[2025-12-14 15:28:01] 2025-12-14 20:27:27,858 | INFO     | overall cleanup function is called
[2025-12-14 15:28:01] 2025-12-14 20:27:28,568 | INFO     | PID=17648 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 15:28:01] 2025-12-14 20:27:28,866 | INFO     | --- collectZombieJob: --- 10, [24222]
[2025-12-14 15:28:01] 2025-12-14 20:27:28,866 | INFO     | zombie collector waiting for pid 24222
[2025-12-14 15:28:01] 2025-12-14 20:27:28,866 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 15:28:01] 2025-12-14 20:27:28,867 | INFO     | collected zombie processes
[2025-12-14 15:28:01] 2025-12-14 20:27:28,867 | INFO     | will attempt to kill all subprocesses of pid=24222
[2025-12-14 15:28:01] 2025-12-14 20:27:28,950 | INFO     | process IDs to be killed: [24222] (in reverse order)
[2025-12-14 15:28:01] 2025-12-14 20:27:29,027 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 15:28:01] 2025-12-14 20:27:29,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 15:28:01] 2025-12-14 20:27:29,031 | INFO     | did not find any defunct processes belonging to 24222
[2025-12-14 15:28:01] 2025-12-14 20:27:29,035 | INFO     | did not find any defunct processes belonging to 24222
[2025-12-14 15:28:01] 2025-12-14 20:27:29,035 | INFO     | ready for new job
[2025-12-14 15:28:01] 2025-12-14 20:27:29,035 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 15:28:01] 2025-12-14 20:27:29,037 | INFO     | ***************************************
[2025-12-14 15:28:01] 2025-12-14 20:27:29,038 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 15:28:01] 2025-12-14 20:27:29,038 | INFO     | ***************************************
[2025-12-14 15:28:01] 2025-12-14 20:27:29,038 | INFO     | 
[2025-12-14 15:28:01] 2025-12-14 20:27:29,038 | INFO     | architecture information:
[2025-12-14 15:28:01] 2025-12-14 20:27:29,039 | INFO     | executing command: cat /etc/os-release
[2025-12-14 15:28:01] 2025-12-14 20:27:29,054 | INFO     | cat /etc/os-release:
[2025-12-14 15:28:01] NAME="CentOS Linux"
[2025-12-14 15:28:01] VERSION="7 (Core)"
[2025-12-14 15:28:01] ID="centos"
[2025-12-14 15:28:01] ID_LIKE="rhel fedora"
[2025-12-14 15:28:01] VERSION_ID="7"
[2025-12-14 15:28:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 15:28:01] ANSI_COLOR="0;31"
[2025-12-14 15:28:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 15:28:01] HOME_URL="https://www.centos.org/"
[2025-12-14 15:28:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 15:28:01] 
[2025-12-14 15:28:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 15:28:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 15:28:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 15:28:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 15:28:01] 
[2025-12-14 15:28:01] 2025-12-14 20:27:29,054 | INFO     | ***************************************
[2025-12-14 15:28:01] 2025-12-14 20:27:29,556 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 15:28:01] 2025-12-14 20:27:29,573 | INFO     | sufficient remaining disk space (18664652800 B)
[2025-12-14 15:28:01] 2025-12-14 20:27:29,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 15:28:01] 2025-12-14 20:27:29,574 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 15:28:01] 2025-12-14 20:27:29,574 | INFO     | update_server=False
[2025-12-14 15:28:01] 2025-12-14 20:27:29,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 15:28:01] 2025-12-14 20:27:29,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 15:28:01] 2025-12-14 20:27:30,070 | INFO     | all job control threads have been joined
[2025-12-14 15:28:01] 2025-12-14 20:27:30,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 15:28:01] 2025-12-14 20:27:30,159 | INFO     | aborting loop
[2025-12-14 15:28:01] 2025-12-14 20:27:30,354 | INFO     | all payload control threads have been joined
[2025-12-14 15:28:01] 2025-12-14 20:27:30,523 | INFO     | all data control threads have been joined
[2025-12-14 15:28:01] 2025-12-14 20:27:30,578 | INFO     | [job] retrieve thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:30,580 | INFO     | [job] queue monitor thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:30,927 | INFO     | [job] validate thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:30,928 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:30,931 | INFO     | [data] copytool_in thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:31,016 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 15:28:01] 2025-12-14 20:27:31,075 | INFO     | [job] control thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:31,084 | INFO     | [payload] validate_post thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:31,165 | INFO     | [job] job monitor thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:31,328 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:31,359 | INFO     | [payload] control thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:31,449 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:31,450 | INFO     | [payload] failed_post thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:31,528 | INFO     | [data] control thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:31,937 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 15:28:01] 2025-12-14 20:27:33,022 | INFO     | [data] copytool_out thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:35,943 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:40,107 | INFO     | job.realtimelogging is not enabled
[2025-12-14 15:28:01] 2025-12-14 20:27:41,112 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 15:28:01] 2025-12-14 20:27:53,292 | INFO     | [monitor] cgroup control has ended
[2025-12-14 15:28:01] 2025-12-14 20:27:54,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140429129701184)>', '<ExcThread(monitor, started 140428074526464)>']
[2025-12-14 15:28:01] 2025-12-14 20:27:59,058 | INFO     | all workflow threads have been joined
[2025-12-14 15:28:01] 2025-12-14 20:27:59,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 15:28:01] 2025-12-14 20:27:59,064 | INFO     | traces error code: 0
[2025-12-14 15:28:01] 2025-12-14 20:27:59,064 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 15:28:01] 2025-12-14 20:28:00,756 | INFO     | PID=17648 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 15:28:01] 2025-12-14 20:28:00,757 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 15:28:01] 2025-12-14 20:28:00,757 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 15:28:01] 2025-12-14 20:28:00,757 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 15:28:01] 2025-12-14 20:28:00,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 15:28:01] 2025-12-14 20:28:00,757 | INFO     | [monitor] control thread has ended
[2025-12-14 15:28:01] 2025-12-14 20:28:00,844 [wrapper] ==== pilot stdout END ====
[2025-12-14 15:28:01] 2025-12-14 20:28:00,846 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 15:28:01] 2025-12-14 20:28:00,849 [wrapper] pilotpid: 17648
[2025-12-14 15:28:01] 2025-12-14 20:28:00,853 [wrapper] Pilot exit status: 0
[2025-12-14 15:28:01] 2025-12-14 20:28:00,865 [wrapper] pandaids: 6929450516
[2025-12-14 15:28:01] 2025-12-14 20:28:00,904 [wrapper] cleanup supervisor_pilot  4779 17649
[2025-12-14 15:28:01] 2025-12-14 20:28:00,908 [wrapper] Test setup, not cleaning
[2025-12-14 15:28:01] 2025-12-14 20:28:00,911 [wrapper] apfmon messages muted
[2025-12-14 15:28:01] 2025-12-14 20:28:00,915 [wrapper] ==== wrapper stdout END ====
[2025-12-14 15:28:01] 2025-12-14 20:28:00,918 [wrapper] ==== wrapper stderr END ====
[2025-12-14 15:28:01]  *** Error codes and diagnostics ***
[2025-12-14 15:28:01]     "exeErrorCode": 0,
[2025-12-14 15:28:01]     "exeErrorDiag": "",
[2025-12-14 15:28:01]     "pilotErrorCode": 0,
[2025-12-14 15:28:01]     "pilotErrorDiag": "",
[2025-12-14 15:28:01]  *** Listing of results directory ***
[2025-12-14 15:28:01] total 346356
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas    579449 Dec 14 09:14 pilot3.tar.gz
[2025-12-14 15:28:01] -rwx------ 1 boincer umatlas     36322 Dec 14 09:17 runpilot2-wrapper.sh
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas      5112 Dec 14 09:17 queuedata.json
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas       100 Dec 14 14:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 15:28:01] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 14:01 run_atlas
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas       105 Dec 14 14:01 job.xml
[2025-12-14 15:28:01] -rw-r--r-- 2 boincer umatlas 192454436 Dec 14 14:01 EVNT.47886929._000176.pool.root.1
[2025-12-14 15:28:01] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 14:01 start_atlas.sh
[2025-12-14 15:28:01] drwxrwx--x 2 boincer umatlas      4096 Dec 14 14:01 shared
[2025-12-14 15:28:01] -rw-r--r-- 2 boincer umatlas    592394 Dec 14 14:01 input.tar.gz
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas         0 Dec 14 14:01 boinc_lockfile
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas      2513 Dec 14 14:01 pandaJob.out
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas        57 Dec 14 14:01 setup.sh.local
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas    991032 Dec 14 14:01 agis_schedconf.cvmfs.json
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas   1516240 Dec 14 14:01 agis_ddmendpoints.agis.ALL.json
[2025-12-14 15:28:01] drwx------ 5 boincer umatlas      4096 Dec 14 14:01 pilot3
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas      5953 Dec 14 15:19 init_data.xml
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas 156042701 Dec 14 15:26 HITS.47886933._003957.pool.root.1
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas       530 Dec 14 15:26 boinc_task_state.xml
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas      1053 Dec 14 15:27 memory_monitor_summary.json
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas    394265 Dec 14 15:27 log.47886933._003957.job.log.tgz.1
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas      7843 Dec 14 15:27 heartbeat.json
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 15:27 boinc_mmap_file
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas        27 Dec 14 15:27 wrapper_checkpoint.txt
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas       745 Dec 14 15:28 pilotlog.txt
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas        95 Dec 14 15:28 pilot_heartbeat.json
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas    737530 Dec 14 15:28 log.47886933._003957.job.log.1
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas       357 Dec 14 15:28 output.list
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas       620 Dec 14 15:28 runtime_log
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas   1146880 Dec 14 15:28 result.tar.gz
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas      9344 Dec 14 15:28 runtime_log.err
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas       658 Dec 14 15:28 pYoNDmn51o8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCiVKDmWzUZ1n.diag
[2025-12-14 15:28:01] -rw-r--r-- 1 boincer umatlas     21989 Dec 14 15:28 stderr.txt
[2025-12-14 15:28:01] HITS file was successfully produced:
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas 156042701 Dec 14 15:26 shared/HITS.pool.root.1
[2025-12-14 15:28:01]  *** Contents of shared directory: ***
[2025-12-14 15:28:01] total 342052
[2025-12-14 15:28:01] -rw-r--r-- 2 boincer umatlas 192454436 Dec 14 14:01 ATLAS.root_0
[2025-12-14 15:28:01] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 14:01 start_atlas.sh
[2025-12-14 15:28:01] -rw-r--r-- 2 boincer umatlas    592394 Dec 14 14:01 input.tar.gz
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas 156042701 Dec 14 15:26 HITS.pool.root.1
[2025-12-14 15:28:01] -rw------- 1 boincer umatlas   1146880 Dec 14 15:28 result.tar.gz
15:28:02 (13901): run_atlas exited; CPU time 47973.975513
15:28:02 (13901): called boinc_finish(0)

</stderr_txt>
]]>

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