Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:37:35 (3613761): wrapper (7.7.26015): starting
05:37:35 (3613761): wrapper: running run_atlas (--nthreads 3)
[2025-12-15 05:37:35] Arguments: --nthreads 3
[2025-12-15 05:37:35] Threads: 3
[2025-12-15 05:37:35] Checking for CVMFS
[2025-12-15 05:37:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 05:37:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 05:37:35] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 05:37:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 05:37:35] 2.9.2.0 2852782 3039 80788 154019 2 56 31711715 36864001 0 130560 0 2014387 99.989 109421 8828 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 05:37:35] CVMFS is ok
[2025-12-15 05:37:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 05:37:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 05:37:35] Further information can be found at the LHC@home message board.
[2025-12-15 05:37:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 05:37:35] Checking for apptainer binary...
[2025-12-15 05:37:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 05:37:35] Running /usr/bin/apptainer --version
[2025-12-15 05:37:35] apptainer version 1.4.1-1.1
[2025-12-15 05:37:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 05:37:35] magicA250a
[2025-12-15 05:37:35] apptainer works
[2025-12-15 05:37:35] Set ATHENA_PROC_NUMBER=3
[2025-12-15 05:37:35] Set ATHENA_CORE_NUMBER=3
[2025-12-15 05:37:35] Starting ATLAS job with PandaID=6929438130
[2025-12-15 05:37:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 07:33:53]  *** The last 200 lines of the pilot log: ***
[2025-12-15 07:33:53] 2025-12-15 06:33:16,901 | INFO     | overall cleanup function is called
[2025-12-15 07:33:53] 2025-12-15 06:33:17,903 | INFO     | --- collectZombieJob: --- 10, [3623935]
[2025-12-15 07:33:53] 2025-12-15 06:33:17,903 | INFO     | zombie collector waiting for pid 3623935
[2025-12-15 07:33:53] 2025-12-15 06:33:17,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 07:33:53] 2025-12-15 06:33:17,903 | INFO     | collected zombie processes
[2025-12-15 07:33:53] 2025-12-15 06:33:17,903 | INFO     | will attempt to kill all subprocesses of pid=3623935
[2025-12-15 07:33:53] 2025-12-15 06:33:17,946 | INFO     | process IDs to be killed: [3623935] (in reverse order)
[2025-12-15 07:33:53] 2025-12-15 06:33:17,969 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 07:33:53] 2025-12-15 06:33:17,969 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 07:33:53] 2025-12-15 06:33:17,971 | INFO     | did not find any defunct processes belonging to 3623935
[2025-12-15 07:33:53] 2025-12-15 06:33:17,972 | INFO     | did not find any defunct processes belonging to 3623935
[2025-12-15 07:33:53] 2025-12-15 06:33:17,972 | INFO     | ready for new job
[2025-12-15 07:33:53] 2025-12-15 06:33:17,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 07:33:53] 2025-12-15 06:33:17,972 | INFO     | ***************************************
[2025-12-15 07:33:53] 2025-12-15 06:33:17,972 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 07:33:53] 2025-12-15 06:33:17,973 | INFO     | ***************************************
[2025-12-15 07:33:53] 2025-12-15 06:33:17,973 | INFO     | 
[2025-12-15 07:33:53] 2025-12-15 06:33:17,973 | INFO     | architecture information:
[2025-12-15 07:33:53] 2025-12-15 06:33:17,973 | INFO     | executing command: cat /etc/os-release
[2025-12-15 07:33:53] 2025-12-15 06:33:17,981 | INFO     | cat /etc/os-release:
[2025-12-15 07:33:53] NAME="CentOS Linux"
[2025-12-15 07:33:53] VERSION="7 (Core)"
[2025-12-15 07:33:53] ID="centos"
[2025-12-15 07:33:53] ID_LIKE="rhel fedora"
[2025-12-15 07:33:53] VERSION_ID="7"
[2025-12-15 07:33:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 07:33:53] ANSI_COLOR="0;31"
[2025-12-15 07:33:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 07:33:53] HOME_URL="https://www.centos.org/"
[2025-12-15 07:33:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 07:33:53] 
[2025-12-15 07:33:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 07:33:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 07:33:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 07:33:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 07:33:53] 
[2025-12-15 07:33:53] 2025-12-15 06:33:17,981 | INFO     | ***************************************
[2025-12-15 07:33:53] 2025-12-15 06:33:18,485 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 07:33:53] 2025-12-15 06:33:18,497 | INFO     | sufficient remaining disk space (328298659840 B)
[2025-12-15 07:33:53] 2025-12-15 06:33:18,497 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 07:33:53] 2025-12-15 06:33:18,497 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 07:33:53] 2025-12-15 06:33:18,497 | INFO     | update_server=False
[2025-12-15 07:33:53] 2025-12-15 06:33:18,497 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 07:33:53] 2025-12-15 06:33:18,498 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 07:33:53] 2025-12-15 06:33:18,498 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 07:33:53] 2025-12-15 06:33:18,498 | INFO     | aborting loop
[2025-12-15 07:33:53] 2025-12-15 06:33:18,752 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 07:33:53] 2025-12-15 06:33:19,396 | INFO     | all data control threads have been joined
[2025-12-15 07:33:53] 2025-12-15 06:33:19,503 | INFO     | [job] retrieve thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:19,503 | INFO     | [job] queue monitor thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:19,503 | INFO     | [job] job monitor thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:19,594 | INFO     | all job control threads have been joined
[2025-12-15 07:33:53] 2025-12-15 06:33:19,657 | INFO     | all payload control threads have been joined
[2025-12-15 07:33:53] 2025-12-15 06:33:19,816 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 07:33:53] 2025-12-15 06:33:19,881 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:20,248 | INFO     | [data] copytool_in thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:20,263 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:20,402 | INFO     | [data] control thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:20,411 | INFO     | [payload] validate_post thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:20,598 | INFO     | [job] control thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:20,663 | INFO     | [payload] control thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:20,766 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:20,766 | INFO     | [job] validate thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:20,883 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:21,060 | INFO     | [payload] failed_post thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:21,823 | INFO     | [data] copytool_out thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:22,759 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 07:33:53] 2025-12-15 06:33:48,308 | INFO     | PID=3617484 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 07:33:53] 2025-12-15 06:33:48,308 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 07:33:53] 2025-12-15 06:33:48,308 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 07:33:53] 2025-12-15 06:33:48,308 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 07:33:53] 2025-12-15 06:33:48,404 | INFO     | [monitor] cgroup control has ended
[2025-12-15 07:33:53] 2025-12-15 06:33:48,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140024212547392)>', '<ExcThread(monitor, started 140023575865088)>']
[2025-12-15 07:33:53] 2025-12-15 06:33:49,314 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 07:33:53] 2025-12-15 06:33:49,314 | INFO     | [monitor] control thread has ended
[2025-12-15 07:33:53] 2025-12-15 06:33:53,775 | INFO     | all workflow threads have been joined
[2025-12-15 07:33:53] 2025-12-15 06:33:53,776 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 07:33:53] 2025-12-15 06:33:53,776 | INFO     | traces error code: 0
[2025-12-15 07:33:53] 2025-12-15 06:33:53,776 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 07:33:53] 2025-12-15 06:33:53,824 [wrapper] ==== pilot stdout END ====
[2025-12-15 07:33:53] 2025-12-15 06:33:53,826 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 07:33:53] 2025-12-15 06:33:53,829 [wrapper] pilotpid: 3617484
[2025-12-15 07:33:53] 2025-12-15 06:33:53,831 [wrapper] Pilot exit status: 0
[2025-12-15 07:33:53] 2025-12-15 06:33:53,838 [wrapper] pandaids: 6929438130
[2025-12-15 07:33:53] 2025-12-15 06:33:53,854 [wrapper] cleanup supervisor_pilot 3638312 3617485
[2025-12-15 07:33:53] 2025-12-15 06:33:53,856 [wrapper] Test setup, not cleaning
[2025-12-15 07:33:53] 2025-12-15 06:33:53,858 [wrapper] apfmon messages muted
[2025-12-15 07:33:53] 2025-12-15 06:33:53,860 [wrapper] ==== wrapper stdout END ====
[2025-12-15 07:33:53] 2025-12-15 06:33:53,863 [wrapper] ==== wrapper stderr END ====
[2025-12-15 07:33:53]  *** Error codes and diagnostics ***
[2025-12-15 07:33:53]     "exeErrorCode": 0,
[2025-12-15 07:33:53]     "exeErrorDiag": "",
[2025-12-15 07:33:53]     "pilotErrorCode": 0,
[2025-12-15 07:33:53]     "pilotErrorDiag": "",
[2025-12-15 07:33:53]  *** Listing of results directory ***
[2025-12-15 07:33:53] total 445200
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc      5112 Dec 14 09:33 queuedata.json
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc    579449 Dec 14 09:33 pilot3.tar.gz
[2025-12-15 07:33:53] -rwx------ 1 boinc boinc     36322 Dec 14 09:34 runpilot2-wrapper.sh
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc       100 Dec 15 05:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 07:33:53] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 05:37 run_atlas
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc       105 Dec 15 05:37 job.xml
[2025-12-15 07:33:53] -rw-r--r-- 2 boinc boinc 223451866 Dec 15 05:37 EVNT.47898761._000393.pool.root.1
[2025-12-15 07:33:53] drwxrwx--x 2 boinc boinc      4096 Dec 15 05:37 shared
[2025-12-15 07:33:53] -rw-r--r-- 2 boinc boinc    592393 Dec 15 05:37 input.tar.gz
[2025-12-15 07:33:53] -rw-r--r-- 2 boinc boinc     15847 Dec 15 05:37 start_atlas.sh
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc         0 Dec 15 05:37 boinc_setup_complete
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc      6442 Dec 15 05:37 init_data.xml
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc         0 Dec 15 05:37 boinc_lockfile
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc      2504 Dec 15 05:37 pandaJob.out
[2025-12-15 07:33:53] -rw------- 1 boinc boinc    991016 Dec 15 05:37 agis_schedconf.cvmfs.json
[2025-12-15 07:33:53] -rw------- 1 boinc boinc   1516240 Dec 15 05:37 agis_ddmendpoints.agis.ALL.json
[2025-12-15 07:33:53] drwx------ 5 boinc boinc      4096 Dec 15 05:37 pilot3
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc       529 Dec 15 07:32 boinc_task_state.xml
[2025-12-15 07:33:53] -rw------- 1 boinc boinc 225991483 Dec 15 07:32 HITS.47898763._009806.pool.root.1
[2025-12-15 07:33:53] -rw------- 1 boinc boinc      1025 Dec 15 07:33 memory_monitor_summary.json
[2025-12-15 07:33:53] -rw------- 1 boinc boinc    271916 Dec 15 07:33 log.47898763._009806.job.log.tgz.1
[2025-12-15 07:33:53] -rw------- 1 boinc boinc        95 Dec 15 07:33 pilot_heartbeat.json
[2025-12-15 07:33:53] -rw------- 1 boinc boinc      7771 Dec 15 07:33 heartbeat.json
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc      8192 Dec 15 07:33 boinc_mmap_file
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc        27 Dec 15 07:33 wrapper_checkpoint.txt
[2025-12-15 07:33:53] -rw------- 1 boinc boinc      4752 Dec 15 07:33 pilotlog.txt
[2025-12-15 07:33:53] -rw------- 1 boinc boinc    999412 Dec 15 07:33 log.47898763._009806.job.log.1
[2025-12-15 07:33:53] -rw------- 1 boinc boinc       357 Dec 15 07:33 output.list
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc       620 Dec 15 07:33 runtime_log
[2025-12-15 07:33:53] -rw------- 1 boinc boinc   1290240 Dec 15 07:33 result.tar.gz
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc      8917 Dec 15 07:33 runtime_log.err
[2025-12-15 07:33:53] -rw------- 1 boinc boinc       663 Dec 15 07:33 8nBODmQjwo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmixQKDmHBvjRn.diag
[2025-12-15 07:33:53] -rw-r--r-- 1 boinc boinc     10712 Dec 15 07:33 stderr.txt
[2025-12-15 07:33:53] HITS file was successfully produced:
[2025-12-15 07:33:53] -rw------- 1 boinc boinc 225991483 Dec 15 07:32 shared/HITS.pool.root.1
[2025-12-15 07:33:53]  *** Contents of shared directory: ***
[2025-12-15 07:33:53] total 440776
[2025-12-15 07:33:53] -rw-r--r-- 2 boinc boinc 223451866 Dec 15 05:37 ATLAS.root_0
[2025-12-15 07:33:53] -rw-r--r-- 2 boinc boinc    592393 Dec 15 05:37 input.tar.gz
[2025-12-15 07:33:53] -rw-r--r-- 2 boinc boinc     15847 Dec 15 05:37 start_atlas.sh
[2025-12-15 07:33:53] -rw------- 1 boinc boinc 225991483 Dec 15 07:32 HITS.pool.root.1
[2025-12-15 07:33:53] -rw------- 1 boinc boinc   1290240 Dec 15 07:33 result.tar.gz
07:33:55 (3613761): run_atlas exited; CPU time 20157.246108
07:33:55 (3613761): called boinc_finish(0)

</stderr_txt>
]]>

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