Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
21:08:33 (19117): wrapper (7.7.26015): starting
21:08:33 (19117): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 21:08:33] Arguments: --nthreads 8
[2025-12-14 21:08:33] Threads: 8
[2025-12-14 21:08:33] Checking for CVMFS
[2025-12-14 21:08:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 21:08:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 21:08:33] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 21:08:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 21:08:33] 2.11.0.0 10367 91862 97412 154006 1 188 2617324 4096001 4585 130560 4 6114737 99.454 6618568 545 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-14 21:08:33] CVMFS is ok
[2025-12-14 21:08:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 21:08:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 21:08:33] Further information can be found at the LHC@home message board.
[2025-12-14 21:08:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 21:08:33] Checking for apptainer binary...
[2025-12-14 21:08:33] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-14 21:08:33] apptainer is not installed, using version from CVMFS
[2025-12-14 21:08:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 21:08:33] WARNING: Environment variable TMPDIR already has value [/tmp/job_10975957/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node203
[2025-12-14 21:08:33] apptainer works
[2025-12-14 21:08:33] Set ATHENA_PROC_NUMBER=8
[2025-12-14 21:08:33] Set ATHENA_CORE_NUMBER=8
[2025-12-14 21:08:33] Starting ATLAS job with PandaID=6929436938
[2025-12-14 21:08:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10975957/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 22:10:50]  *** The last 200 lines of the pilot log: ***
[2025-12-14 22:10:50]  mtime=0
[2025-12-14 22:10:50]  protocol_id=None
[2025-12-14 22:10:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 22:10:50]  replicas=None
[2025-12-14 22:10:50]  scope=mc23_13p6TeV
[2025-12-14 22:10:50]  status=None
[2025-12-14 22:10:50]  status_code=0
[2025-12-14 22:10:50]  storage_token=
[2025-12-14 22:10:50]  surl=/tmp/job_10975957/atlas/pilot/slots/0/PanDA_Pilot-6929436938/log.47898763._008701.job.log.tgz.1
[2025-12-14 22:10:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0f/33/log.47898763._008701.job.log.tgz.1
[2025-12-14 22:10:50]  workdir=None
[2025-12-14 22:10:50] ]
[2025-12-14 22:10:50] 2025-12-14 21:09:58,668 | INFO     | transferring file log.47898763._008701.job.log.tgz.1 from /tmp/job_10975957/atlas/pilot/slots/0/PanDA_Pilot-6929436938/log.47898763._008701.job.log.tgz.1 to /tmp/j
[2025-12-14 22:10:50] 2025-12-14 21:09:58,669 | INFO     | executing command: /usr/bin/env mv /tmp/job_10975957/atlas/pilot/slots/0/PanDA_Pilot-6929436938/log.47898763._008701.job.log.tgz.1 /tmp/job_10975957/atlas/pilot/sl
[2025-12-14 22:10:50] 2025-12-14 21:09:58,676 | INFO     | adding to output.list: log.47898763._008701.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0f/33/log.47898763._008701.job.log.tg
[2025-12-14 22:10:50] 2025-12-14 21:09:58,676 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 22:10:50] 2025-12-14 21:09:58,676 | INFO     | summary of transferred files:
[2025-12-14 22:10:50] 2025-12-14 21:09:58,676 | INFO     |  -- lfn=log.47898763._008701.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 22:10:50] 2025-12-14 21:09:58,676 | INFO     | stage-out finished correctly
[2025-12-14 22:10:50] 2025-12-14 21:09:58,761 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 22:10:50] 2025-12-14 21:09:58,888 | INFO     | PID=23821 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 22:10:50] 2025-12-14 21:09:58,888 | INFO     | .. there are 2 such processes running
[2025-12-14 22:10:50] 2025-12-14 21:09:59,888 | INFO     | time since job start (3681s) is within the limit (174528.0s)
[2025-12-14 22:10:50] 2025-12-14 21:10:01,412 | WARNING  | process 31986 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 22:10:50] 2025-12-14 21:10:01,412 | INFO     | using path: /tmp/job_10975957/atlas/pilot/slots/0/PanDA_Pilot-6929436938/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 22:10:50] 2025-12-14 21:10:01,506 | INFO     | number of running child processes to parent process 31986: 1
[2025-12-14 22:10:50] 2025-12-14 21:10:01,506 | INFO     | maximum number of monitored processes: 6
[2025-12-14 22:10:50] 2025-12-14 21:10:01,570 | INFO     | job 6929436938 has state=finished
[2025-12-14 22:10:50] 2025-12-14 21:10:01,571 | INFO     | preparing for final server update for job 6929436938 in state='finished'
[2025-12-14 22:10:50] 2025-12-14 21:10:01,571 | INFO     | this job has now completed (state=finished)
[2025-12-14 22:10:50] 2025-12-14 21:10:01,571 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 22:10:50] 2025-12-14 21:10:01,571 | INFO     | log transfer has been attempted: DONE
[2025-12-14 22:10:50] 2025-12-14 21:10:01,571 | INFO     | job 6929436938 has finished - writing final server update
[2025-12-14 22:10:50] 2025-12-14 21:10:01,571 | INFO     | total number of processed events: 400 (read)
[2025-12-14 22:10:50] 2025-12-14 21:10:01,572 | INFO     | executing command: lscpu
[2025-12-14 22:10:50] 2025-12-14 21:10:01,603 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 22:10:50] 2025-12-14 21:10:01,893 | INFO     | time since job start (3683s) is within the limit (174528.0s)
[2025-12-14 22:10:50] 2025-12-14 21:10:03,224 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 22:10:50] 2025-12-14 21:10:03,229 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2490.084609375
[2025-12-14 22:10:50] 2025-12-14 21:10:03,234 | INFO     | using path: /tmp/job_10975957/atlas/pilot/slots/0/PanDA_Pilot-6929436938/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 22:10:50] 2025-12-14 21:10:03,234 | INFO     | extracted standard info from prmon json
[2025-12-14 22:10:50] 2025-12-14 21:10:03,234 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 22:10:50] 2025-12-14 21:10:03,234 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 22:10:50] 2025-12-14 21:10:03,234 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 22:10:50] 2025-12-14 21:10:03,234 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 22:10:50] 2025-12-14 21:10:03,235 | INFO     | fitting pss+swap vs Time
[2025-12-14 22:10:50] 2025-12-14 21:10:03,235 | INFO     | sum of square deviations: 48810217.5
[2025-12-14 22:10:50] 2025-12-14 21:10:03,235 | INFO     | sum of deviations: 830229032.0
[2025-12-14 22:10:50] 2025-12-14 21:10:03,235 | INFO     | mean x: 1765744856.5
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | mean y: 2514826.4444444445
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | intersect: -30031619788.320873
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | chi2: 0.0006033575713349251
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | current memory leak: 17.01 B/s (using 54 data points, chi2=0.00)
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | could have reported an average CPU frequency of 2819 MHz (6 samples)
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | ..............................
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | . Timing measurements:
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | . get job = 0 s
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | . initial setup = 1 s
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | . payload setup = 2 s
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | . stage-in = 0 s
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | . payload execution = 3661 s
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | . stage-out = 0 s
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | . log creation = 0 s
[2025-12-14 22:10:50] 2025-12-14 21:10:03,236 | INFO     | ..............................
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | 
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | job summary report
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | --------------------------------------------------
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | PanDA job id: 6929436938
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | task id: 47898763
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | errors: (none)
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | pilot state: finished 
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | transexitcode: 0
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | exeerrorcode: 0
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | exeerrordiag: 
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | exitcode: 0
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | exitmsg: OK
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | cpuconsumptiontime: 27148 s
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | nevents: 400
[2025-12-14 22:10:50] 2025-12-14 21:10:03,284 | INFO     | neventsw: 0
[2025-12-14 22:10:50] 2025-12-14 21:10:03,285 | INFO     | pid: 31986
[2025-12-14 22:10:50] 2025-12-14 21:10:03,285 | INFO     | pgrp: 31986
[2025-12-14 22:10:50] 2025-12-14 21:10:03,285 | INFO     | corecount: 8
[2025-12-14 22:10:50] 2025-12-14 21:10:03,285 | INFO     | event service: False
[2025-12-14 22:10:50] 2025-12-14 21:10:03,285 | INFO     | sizes: {0: 2283796, 1: 2284106, 2: 2284368, 11: 2284396, 3667: 2319345, 3668: 2319345, 3672: 2319667}
[2025-12-14 22:10:50] 2025-12-14 21:10:03,285 | INFO     | --------------------------------------------------
[2025-12-14 22:10:50] 2025-12-14 21:10:03,285 | INFO     | 
[2025-12-14 22:10:50] 2025-12-14 21:10:03,285 | INFO     | executing command: ls -lF /tmp/job_10975957/atlas/pilot/slots/0
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,294 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,295 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 22:10:50] 2025-12-14 21:10:03,295 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,295 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 22:10:50] 2025-12-14 21:10:03,295 | INFO     | job 6929436938 has completed (purged errors)
[2025-12-14 22:10:50] 2025-12-14 21:10:03,295 | INFO     | overall cleanup function is called
[2025-12-14 22:10:50] 2025-12-14 21:10:04,301 | INFO     | --- collectZombieJob: --- 10, [31986]
[2025-12-14 22:10:50] 2025-12-14 21:10:04,301 | INFO     | zombie collector waiting for pid 31986
[2025-12-14 22:10:50] 2025-12-14 21:10:04,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 22:10:50] 2025-12-14 21:10:04,301 | INFO     | collected zombie processes
[2025-12-14 22:10:50] 2025-12-14 21:10:04,301 | INFO     | will attempt to kill all subprocesses of pid=31986
[2025-12-14 22:10:50] 2025-12-14 21:10:04,397 | INFO     | process IDs to be killed: [31986] (in reverse order)
[2025-12-14 22:10:50] 2025-12-14 21:10:04,431 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 22:10:50] 2025-12-14 21:10:04,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 22:10:50] 2025-12-14 21:10:04,435 | INFO     | did not find any defunct processes belonging to 31986
[2025-12-14 22:10:50] 2025-12-14 21:10:04,438 | INFO     | did not find any defunct processes belonging to 31986
[2025-12-14 22:10:50] 2025-12-14 21:10:04,438 | INFO     | ready for new job
[2025-12-14 22:10:50] 2025-12-14 21:10:04,438 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 22:10:50] 2025-12-14 21:10:04,438 | INFO     | ***************************************
[2025-12-14 22:10:50] 2025-12-14 21:10:04,438 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 22:10:50] 2025-12-14 21:10:04,438 | INFO     | ***************************************
[2025-12-14 22:10:50] 2025-12-14 21:10:04,438 | INFO     | 
[2025-12-14 22:10:50] 2025-12-14 21:10:04,453 | INFO     | architecture information:
[2025-12-14 22:10:50] 2025-12-14 21:10:04,453 | INFO     | executing command: cat /etc/os-release
[2025-12-14 22:10:50] 2025-12-14 21:10:04,459 | INFO     | cat /etc/os-release:
[2025-12-14 22:10:50] NAME="CentOS Linux"
[2025-12-14 22:10:50] VERSION="7 (Core)"
[2025-12-14 22:10:50] ID="centos"
[2025-12-14 22:10:50] ID_LIKE="rhel fedora"
[2025-12-14 22:10:50] VERSION_ID="7"
[2025-12-14 22:10:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 22:10:50] ANSI_COLOR="0;31"
[2025-12-14 22:10:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 22:10:50] HOME_URL="https://www.centos.org/"
[2025-12-14 22:10:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 22:10:50] 
[2025-12-14 22:10:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 22:10:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 22:10:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 22:10:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 22:10:50] 
[2025-12-14 22:10:50] 2025-12-14 21:10:04,459 | INFO     | ***************************************
[2025-12-14 22:10:50] 2025-12-14 21:10:04,962 | INFO     | executing command: df -mP /tmp/job_10975957/atlas/pilot/slots/0
[2025-12-14 22:10:50] 2025-12-14 21:10:04,968 | INFO     | sufficient remaining disk space (226701082624 B)
[2025-12-14 22:10:50] 2025-12-14 21:10:04,968 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 22:10:50] 2025-12-14 21:10:04,968 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 22:10:50] 2025-12-14 21:10:04,968 | INFO     | update_server=False
[2025-12-14 22:10:50] 2025-12-14 21:10:04,968 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 22:10:50] 2025-12-14 21:10:04,968 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 22:10:50] 2025-12-14 21:10:04,968 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 22:10:50] 2025-12-14 21:10:04,968 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 22:10:50] 2025-12-14 21:10:05,014 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 22:10:50] 2025-12-14 21:10:05,014 | INFO     | aborting loop
[2025-12-14 22:10:50] 2025-12-14 21:10:05,099 | INFO     | all payload control threads have been joined
[2025-12-14 22:10:50] 2025-12-14 21:10:05,426 | INFO     | all data control threads have been joined
[2025-12-14 22:10:50] 2025-12-14 21:10:05,973 | INFO     | [job] retrieve thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:05,974 | INFO     | [job] queue monitor thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:05,976 | INFO     | all job control threads have been joined
[2025-12-14 22:10:50] 2025-12-14 21:10:06,019 | INFO     | [job] job monitor thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:06,104 | INFO     | [payload] control thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:06,431 | INFO     | [data] control thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:06,485 | INFO     | [job] validate thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:06,548 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:06,766 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:06,853 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:06,862 | INFO     | [payload] failed_post thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:06,974 | INFO     | [data] copytool_out thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:06,981 | INFO     | [job] control thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:07,254 | INFO     | [data] copytool_in thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:07,309 | INFO     | [payload] validate_post thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:08,974 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:15,114 | INFO     | job.realtimelogging is not enabled
[2025-12-14 22:10:50] 2025-12-14 21:10:16,120 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 22:10:50] 2025-12-14 21:10:35,078 | INFO     | PID=23821 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 22:10:50] 2025-12-14 21:10:35,079 | INFO     | .. there are 2 such processes running
[2025-12-14 22:10:50] 2025-12-14 21:10:35,079 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 22:10:50] 2025-12-14 21:10:35,079 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 22:10:50] 2025-12-14 21:10:35,079 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 22:10:50] 2025-12-14 21:10:43,878 | INFO     | [monitor] cgroup control has ended
[2025-12-14 22:10:50] 2025-12-14 21:10:44,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058717952)>']
[2025-12-14 22:10:50] 2025-12-14 21:10:45,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 22:10:50] 2025-12-14 21:10:45,129 | INFO     | [monitor] control thread has ended
[2025-12-14 22:10:50] 2025-12-14 21:10:49,978 | INFO     | all workflow threads have been joined
[2025-12-14 22:10:50] 2025-12-14 21:10:49,978 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 22:10:50] 2025-12-14 21:10:49,978 | INFO     | traces error code: 0
[2025-12-14 22:10:50] 2025-12-14 21:10:49,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 22:10:50] 2025-12-14 21:10:50,028 [wrapper] ==== pilot stdout END ====
[2025-12-14 22:10:50] 2025-12-14 21:10:50,030 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 22:10:50] 2025-12-14 21:10:50,031 [wrapper] pilotpid: 23821
[2025-12-14 22:10:50] 2025-12-14 21:10:50,032 [wrapper] Pilot exit status: 0
[2025-12-14 22:10:50] 2025-12-14 21:10:50,036 [wrapper] pandaids: 6929436938
[2025-12-14 22:10:50] 2025-12-14 21:10:50,057 [wrapper] cleanup supervisor_pilot 25556 23822
[2025-12-14 22:10:50] 2025-12-14 21:10:50,058 [wrapper] Test setup, not cleaning
[2025-12-14 22:10:50] 2025-12-14 21:10:50,060 [wrapper] apfmon messages muted
[2025-12-14 22:10:50] 2025-12-14 21:10:50,061 [wrapper] ==== wrapper stdout END ====
[2025-12-14 22:10:50] 2025-12-14 21:10:50,062 [wrapper] ==== wrapper stderr END ====
[2025-12-14 22:10:50]  *** Error codes and diagnostics ***
[2025-12-14 22:10:50]     "exeErrorCode": 0,
[2025-12-14 22:10:50]     "exeErrorDiag": "",
[2025-12-14 22:10:50]     "pilotErrorCode": 0,
[2025-12-14 22:10:50]     "pilotErrorDiag": "",
[2025-12-14 22:10:50]  *** Listing of results directory ***
[2025-12-14 22:10:50] total 432984
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user      5112 Dec 14 08:50 queuedata.json
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user    579449 Dec 14 08:50 pilot3.tar.gz
[2025-12-14 22:10:50] -rwx------ 1 mf493845 unix-user     36322 Dec 14 08:50 runpilot2-wrapper.sh
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user       100 Dec 14 20:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 22:10:50] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec 14 20:11 run_atlas
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user       105 Dec 14 20:11 job.xml
[2025-12-14 22:10:50] -rw-r--r-- 2 mf493845 unix-user 225896407 Dec 14 21:08 EVNT.47898761._000348.pool.root.1
[2025-12-14 22:10:50] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 14 21:08 start_atlas.sh
[2025-12-14 22:10:50] drwxrwx--x 2 mf493845 unix-user       100 Dec 14 21:08 shared
[2025-12-14 22:10:50] -rw-r--r-- 2 mf493845 unix-user    592395 Dec 14 21:08 input.tar.gz
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user      6392 Dec 14 21:08 init_data.xml
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user         0 Dec 14 21:08 boinc_setup_complete
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user      8192 Dec 14 21:08 boinc_mmap_file
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user         0 Dec 14 21:08 boinc_lockfile
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user      2504 Dec 14 21:08 pandaJob.out
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user    991016 Dec 14 21:08 agis_schedconf.cvmfs.json
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user   1516240 Dec 14 21:08 agis_ddmendpoints.agis.ALL.json
[2025-12-14 22:10:50] drwx------ 5 mf493845 unix-user       440 Dec 14 21:08 pilot3
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user 211806952 Dec 14 22:09 HITS.47898763._008701.pool.root.1
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user      1019 Dec 14 22:09 memory_monitor_summary.json
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user    326375 Dec 14 22:09 log.47898763._008701.job.log.tgz.1
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user      7768 Dec 14 22:10 heartbeat.json
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user        95 Dec 14 22:10 pilot_heartbeat.json
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user      4907 Dec 14 22:10 pilotlog.txt
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user    568889 Dec 14 22:10 log.47898763._008701.job.log.1
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user       357 Dec 14 22:10 output.list
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user       620 Dec 14 22:10 runtime_log
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user    911360 Dec 14 22:10 result.tar.gz
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user      9220 Dec 14 22:10 runtime_log.err
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user       641 Dec 14 22:10 ppTNDm92vo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5sQKDmHmEqkn.diag
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user     22287 Dec 14 22:10 stderr.txt
[2025-12-14 22:10:50] HITS file was successfully produced:
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user 211806952 Dec 14 22:09 shared/HITS.pool.root.1
[2025-12-14 22:10:50]  *** Contents of shared directory: ***
[2025-12-14 22:10:50] total 428936
[2025-12-14 22:10:50] -rw-r--r-- 2 mf493845 unix-user 225896407 Dec 14 21:08 ATLAS.root_0
[2025-12-14 22:10:50] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 14 21:08 start_atlas.sh
[2025-12-14 22:10:50] -rw-r--r-- 2 mf493845 unix-user    592395 Dec 14 21:08 input.tar.gz
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user 211806952 Dec 14 22:09 HITS.pool.root.1
[2025-12-14 22:10:50] -rw------- 1 mf493845 unix-user    911360 Dec 14 22:10 result.tar.gz
22:10:51 (19117): run_atlas exited; CPU time 27199.189314
22:10:51 (19117): called boinc_finish(0)

</stderr_txt>
]]>

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