Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:58:59 (10238): wrapper (7.7.26015): starting
18:58:59 (10238): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 18:58:59] Arguments: --nthreads 8
[2025-12-14 18:58:59] Threads: 8
[2025-12-14 18:58:59] Checking for CVMFS
[2025-12-14 18:58:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 18:59:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 18:59:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 18:59:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 18:59:00] 2.11.0.0 3921 92044 95024 154003 1 188 2235774 4096000 3684 130560 2 5427323 99.359 7371174 612 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-14 18:59:00] CVMFS is ok
[2025-12-14 18:59:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 18:59:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 18:59:00] Further information can be found at the LHC@home message board.
[2025-12-14 18:59:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 18:59:00] Checking for apptainer binary...
[2025-12-14 18:59:00] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-14 18:59:00] apptainer is not installed, using version from CVMFS
[2025-12-14 18:59:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 18:59:00] WARNING: Environment variable TMPDIR already has value [/tmp/job_10975869/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node139
[2025-12-14 18:59:00] apptainer works
[2025-12-14 18:59:00] Set ATHENA_PROC_NUMBER=8
[2025-12-14 18:59:00] Set ATHENA_CORE_NUMBER=8
[2025-12-14 18:59:00] Starting ATLAS job with PandaID=6929409368
[2025-12-14 18:59:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10975869/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 20:02:17]  *** The last 200 lines of the pilot log: ***
[2025-12-14 20:02:17]  is_tar=False
[2025-12-14 20:02:17]  lfn=log.47898836._002297.job.log.tgz.1
[2025-12-14 20:02:17]  mtime=0
[2025-12-14 20:02:17]  protocol_id=None
[2025-12-14 20:02:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 20:02:17]  replicas=None
[2025-12-14 20:02:17]  scope=mc23_13p6TeV
[2025-12-14 20:02:17]  status=None
[2025-12-14 20:02:17]  status_code=0
[2025-12-14 20:02:17]  storage_token=
[2025-12-14 20:02:17]  surl=/tmp/job_10975869/atlas/pilot/slots/0/PanDA_Pilot-6929409368/log.47898836._002297.job.log.tgz.1
[2025-12-14 20:02:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/51/92/log.47898836._002297.job.log.tgz.1
[2025-12-14 20:02:17]  workdir=None
[2025-12-14 20:02:17] ]
[2025-12-14 20:02:17] 2025-12-14 19:01:27,009 | INFO     | transferring file log.47898836._002297.job.log.tgz.1 from /tmp/job_10975869/atlas/pilot/slots/0/PanDA_Pilot-6929409368/log.47898836._002297.job.log.tgz.1 to /tmp/j
[2025-12-14 20:02:17] 2025-12-14 19:01:27,009 | INFO     | executing command: /usr/bin/env mv /tmp/job_10975869/atlas/pilot/slots/0/PanDA_Pilot-6929409368/log.47898836._002297.job.log.tgz.1 /tmp/job_10975869/atlas/pilot/sl
[2025-12-14 20:02:17] 2025-12-14 19:01:27,017 | INFO     | adding to output.list: log.47898836._002297.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/51/92/log.47898836._002297.job.log.tg
[2025-12-14 20:02:17] 2025-12-14 19:01:27,017 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 20:02:17] 2025-12-14 19:01:27,017 | INFO     | summary of transferred files:
[2025-12-14 20:02:17] 2025-12-14 19:01:27,017 | INFO     |  -- lfn=log.47898836._002297.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 20:02:17] 2025-12-14 19:01:27,017 | INFO     | stage-out finished correctly
[2025-12-14 20:02:17] 2025-12-14 19:01:27,462 | INFO     | time since job start (3742s) is within the limit (174528.0s)
[2025-12-14 20:02:17] 2025-12-14 19:01:28,571 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 20:02:17] 2025-12-14 19:01:28,618 | INFO     | job 6929409368 has state=finished
[2025-12-14 20:02:17] 2025-12-14 19:01:28,619 | INFO     | preparing for final server update for job 6929409368 in state='finished'
[2025-12-14 20:02:17] 2025-12-14 19:01:28,619 | INFO     | this job has now completed (state=finished)
[2025-12-14 20:02:17] 2025-12-14 19:01:28,619 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 20:02:17] 2025-12-14 19:01:28,619 | INFO     | log transfer has been attempted: DONE
[2025-12-14 20:02:17] 2025-12-14 19:01:28,619 | INFO     | job 6929409368 has finished - writing final server update
[2025-12-14 20:02:17] 2025-12-14 19:01:28,619 | INFO     | total number of processed events: 400 (read)
[2025-12-14 20:02:17] 2025-12-14 19:01:28,620 | INFO     | executing command: lscpu
[2025-12-14 20:02:17] 2025-12-14 19:01:28,651 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 20:02:17] 2025-12-14 19:01:28,666 | WARNING  | process 25831 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 20:02:17] 2025-12-14 19:01:28,666 | INFO     | using path: /tmp/job_10975869/atlas/pilot/slots/0/PanDA_Pilot-6929409368/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 20:02:17] 2025-12-14 19:01:28,758 | INFO     | number of running child processes to parent process 25831: 1
[2025-12-14 20:02:17] 2025-12-14 19:01:28,758 | INFO     | maximum number of monitored processes: 6
[2025-12-14 20:02:17] 2025-12-14 19:01:29,467 | INFO     | time since job start (3744s) is within the limit (174528.0s)
[2025-12-14 20:02:17] 2025-12-14 19:01:30,239 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 20:02:17] 2025-12-14 19:01:30,243 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2365.2715156249997
[2025-12-14 20:02:17] 2025-12-14 19:01:30,261 | INFO     | using path: /tmp/job_10975869/atlas/pilot/slots/0/PanDA_Pilot-6929409368/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 20:02:17] 2025-12-14 19:01:30,261 | INFO     | extracted standard info from prmon json
[2025-12-14 20:02:17] 2025-12-14 19:01:30,261 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 20:02:17] 2025-12-14 19:01:30,261 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 20:02:17] 2025-12-14 19:01:30,261 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 20:02:17] 2025-12-14 19:01:30,261 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 20:02:17] 2025-12-14 19:01:30,262 | INFO     | fitting pss+swap vs Time
[2025-12-14 20:02:17] 2025-12-14 19:01:30,262 | INFO     | sum of square deviations: 48810217.5
[2025-12-14 20:02:17] 2025-12-14 19:01:30,262 | INFO     | sum of deviations: -279840336.4999998
[2025-12-14 20:02:17] 2025-12-14 19:01:30,262 | INFO     | mean x: 1765737083.5
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | mean y: 2540801.9444444445
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | intersect: 10125922440.57714
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | chi2: 0.00840982921884509
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | current memory leak: -5.73 B/s (using 54 data points, chi2=0.01)
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | could have reported an average CPU frequency of 2715 MHz (6 samples)
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | ..............................
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | . Timing measurements:
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | . get job = 0 s
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | . initial setup = 1 s
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | . payload setup = 2 s
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | . stage-in = 0 s
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | . payload execution = 3722 s
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | . stage-out = 0 s
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | . log creation = 0 s
[2025-12-14 20:02:17] 2025-12-14 19:01:30,263 | INFO     | ..............................
[2025-12-14 20:02:17] 2025-12-14 19:01:30,591 | INFO     | PID=15238 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | 
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | job summary report
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | --------------------------------------------------
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | PanDA job id: 6929409368
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | task id: 47898836
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | errors: (none)
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | pilot state: finished 
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | transexitcode: 0
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | exeerrorcode: 0
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | exeerrordiag: 
[2025-12-14 20:02:17] 2025-12-14 19:01:30,781 | INFO     | exitcode: 0
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | exitmsg: OK
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | cpuconsumptiontime: 27725 s
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | nevents: 400
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | neventsw: 0
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | pid: 25831
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | pgrp: 25831
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | corecount: 8
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | event service: False
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | sizes: {0: 2283794, 1: 2284160, 2: 2284422, 11: 2284450, 3728: 2310379, 3729: 2319407, 3731: 2319591, 3733: 2319785}
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | --------------------------------------------------
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | 
[2025-12-14 20:02:17] 2025-12-14 19:01:30,782 | INFO     | executing command: ls -lF /tmp/job_10975869/atlas/pilot/slots/0
[2025-12-14 20:02:17] 2025-12-14 19:01:30,791 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,791 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,791 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,791 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,791 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,791 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,791 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | job 6929409368 has completed (purged errors)
[2025-12-14 20:02:17] 2025-12-14 19:01:30,792 | INFO     | overall cleanup function is called
[2025-12-14 20:02:17] 2025-12-14 19:01:31,798 | INFO     | --- collectZombieJob: --- 10, [25831]
[2025-12-14 20:02:17] 2025-12-14 19:01:31,798 | INFO     | zombie collector waiting for pid 25831
[2025-12-14 20:02:17] 2025-12-14 19:01:31,798 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 20:02:17] 2025-12-14 19:01:31,798 | INFO     | collected zombie processes
[2025-12-14 20:02:17] 2025-12-14 19:01:31,798 | INFO     | will attempt to kill all subprocesses of pid=25831
[2025-12-14 20:02:17] 2025-12-14 19:01:31,890 | INFO     | process IDs to be killed: [25831] (in reverse order)
[2025-12-14 20:02:17] 2025-12-14 19:01:31,920 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 20:02:17] 2025-12-14 19:01:31,920 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 20:02:17] 2025-12-14 19:01:31,924 | INFO     | did not find any defunct processes belonging to 25831
[2025-12-14 20:02:17] 2025-12-14 19:01:31,927 | INFO     | did not find any defunct processes belonging to 25831
[2025-12-14 20:02:17] 2025-12-14 19:01:31,927 | INFO     | ready for new job
[2025-12-14 20:02:17] 2025-12-14 19:01:31,927 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 20:02:17] 2025-12-14 19:01:31,927 | INFO     | ***************************************
[2025-12-14 20:02:17] 2025-12-14 19:01:31,927 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 20:02:17] 2025-12-14 19:01:31,927 | INFO     | ***************************************
[2025-12-14 20:02:17] 2025-12-14 19:01:31,927 | INFO     | 
[2025-12-14 20:02:17] 2025-12-14 19:01:31,941 | INFO     | architecture information:
[2025-12-14 20:02:17] 2025-12-14 19:01:31,941 | INFO     | executing command: cat /etc/os-release
[2025-12-14 20:02:17] 2025-12-14 19:01:31,947 | INFO     | cat /etc/os-release:
[2025-12-14 20:02:17] NAME="CentOS Linux"
[2025-12-14 20:02:17] VERSION="7 (Core)"
[2025-12-14 20:02:17] ID="centos"
[2025-12-14 20:02:17] ID_LIKE="rhel fedora"
[2025-12-14 20:02:17] VERSION_ID="7"
[2025-12-14 20:02:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 20:02:17] ANSI_COLOR="0;31"
[2025-12-14 20:02:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 20:02:17] HOME_URL="https://www.centos.org/"
[2025-12-14 20:02:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 20:02:17] 
[2025-12-14 20:02:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 20:02:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 20:02:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 20:02:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 20:02:17] 
[2025-12-14 20:02:17] 2025-12-14 19:01:31,947 | INFO     | ***************************************
[2025-12-14 20:02:17] 2025-12-14 19:01:32,450 | INFO     | executing command: df -mP /tmp/job_10975869/atlas/pilot/slots/0
[2025-12-14 20:02:17] 2025-12-14 19:01:32,456 | INFO     | sufficient remaining disk space (227445571584 B)
[2025-12-14 20:02:17] 2025-12-14 19:01:32,456 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 20:02:17] 2025-12-14 19:01:32,456 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 20:02:17] 2025-12-14 19:01:32,456 | INFO     | update_server=False
[2025-12-14 20:02:17] 2025-12-14 19:01:32,456 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 20:02:17] 2025-12-14 19:01:32,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 20:02:17] 2025-12-14 19:01:32,456 | INFO     | aborting loop
[2025-12-14 20:02:17] 2025-12-14 19:01:32,575 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 20:02:17] 2025-12-14 19:01:32,835 | INFO     | all job control threads have been joined
[2025-12-14 20:02:17] 2025-12-14 19:01:33,152 | INFO     | all data control threads have been joined
[2025-12-14 20:02:17] 2025-12-14 19:01:33,461 | INFO     | [job] retrieve thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:33,462 | INFO     | [job] job monitor thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:33,462 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:33,511 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:33,737 | INFO     | all payload control threads have been joined
[2025-12-14 20:02:17] 2025-12-14 19:01:33,838 | INFO     | [data] copytool_in thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:33,840 | INFO     | [job] control thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:34,157 | INFO     | [data] control thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:34,218 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:34,367 | INFO     | [payload] failed_post thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:34,580 | INFO     | [data] copytool_out thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:34,624 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 20:02:17] 2025-12-14 19:01:34,642 | INFO     | [job] validate thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:34,742 | INFO     | [payload] control thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:34,807 | INFO     | [payload] validate_post thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:35,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 20:02:17] 2025-12-14 19:01:36,327 | INFO     | [job] queue monitor thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:38,629 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:01:43,010 | INFO     | job.realtimelogging is not enabled
[2025-12-14 20:02:17] 2025-12-14 19:01:44,015 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 20:02:17] 2025-12-14 19:02:02,768 | INFO     | PID=15238 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 20:02:17] 2025-12-14 19:02:02,768 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 20:02:17] 2025-12-14 19:02:02,768 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 20:02:17] 2025-12-14 19:02:02,768 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 20:02:17] 2025-12-14 19:02:10,743 | INFO     | [monitor] cgroup control has ended
[2025-12-14 20:02:17] 2025-12-14 19:02:11,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-14 20:02:17] 2025-12-14 19:02:12,817 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 20:02:17] 2025-12-14 19:02:12,818 | INFO     | [monitor] control thread has ended
[2025-12-14 20:02:17] 2025-12-14 19:02:16,849 | INFO     | all workflow threads have been joined
[2025-12-14 20:02:17] 2025-12-14 19:02:16,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 20:02:17] 2025-12-14 19:02:16,850 | INFO     | traces error code: 0
[2025-12-14 20:02:17] 2025-12-14 19:02:16,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 20:02:17] 2025-12-14 19:02:16,901 [wrapper] ==== pilot stdout END ====
[2025-12-14 20:02:17] 2025-12-14 19:02:16,902 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 20:02:17] 2025-12-14 19:02:16,904 [wrapper] pilotpid: 15238
[2025-12-14 20:02:17] 2025-12-14 19:02:16,905 [wrapper] Pilot exit status: 0
[2025-12-14 20:02:17] 2025-12-14 19:02:16,909 [wrapper] pandaids: 6929409368
[2025-12-14 20:02:17] 2025-12-14 19:02:16,928 [wrapper] cleanup supervisor_pilot 15619 15239
[2025-12-14 20:02:17] 2025-12-14 19:02:16,930 [wrapper] Test setup, not cleaning
[2025-12-14 20:02:17] 2025-12-14 19:02:16,931 [wrapper] apfmon messages muted
[2025-12-14 20:02:17] 2025-12-14 19:02:16,932 [wrapper] ==== wrapper stdout END ====
[2025-12-14 20:02:17] 2025-12-14 19:02:16,933 [wrapper] ==== wrapper stderr END ====
[2025-12-14 20:02:17]  *** Error codes and diagnostics ***
[2025-12-14 20:02:17]     "exeErrorCode": 0,
[2025-12-14 20:02:17]     "exeErrorDiag": "",
[2025-12-14 20:02:17]     "pilotErrorCode": 0,
[2025-12-14 20:02:17]     "pilotErrorDiag": "",
[2025-12-14 20:02:17]  *** Listing of results directory ***
[2025-12-14 20:02:17] total 405140
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user    579449 Dec 14 02:02 pilot3.tar.gz
[2025-12-14 20:02:17] -rwx------ 1 mf493845 unix-user     36322 Dec 14 02:06 runpilot2-wrapper.sh
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user      5112 Dec 14 02:08 queuedata.json
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user       100 Dec 14 18:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 20:02:17] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec 14 18:58 run_atlas
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user       105 Dec 14 18:58 job.xml
[2025-12-14 20:02:17] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 14 18:58 start_atlas.sh
[2025-12-14 20:02:17] drwxrwx--x 2 mf493845 unix-user       100 Dec 14 18:58 shared
[2025-12-14 20:02:17] -rw-r--r-- 2 mf493845 unix-user    592407 Dec 14 18:58 input.tar.gz
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user      6391 Dec 14 18:58 init_data.xml
[2025-12-14 20:02:17] -rw-r--r-- 2 mf493845 unix-user 212595037 Dec 14 18:58 EVNT.47898833._000092.pool.root.1
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user         0 Dec 14 18:58 boinc_setup_complete
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user      8192 Dec 14 18:58 boinc_mmap_file
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user         0 Dec 14 18:58 boinc_lockfile
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user      2549 Dec 14 18:59 pandaJob.out
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user    991024 Dec 14 18:59 agis_schedconf.cvmfs.json
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user   1516240 Dec 14 18:59 agis_ddmendpoints.agis.ALL.json
[2025-12-14 20:02:17] drwx------ 5 mf493845 unix-user       440 Dec 14 18:59 pilot3
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user 196589411 Dec 14 20:01 HITS.47898836._002297.pool.root.1
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user      1020 Dec 14 20:01 memory_monitor_summary.json
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user    320571 Dec 14 20:01 log.47898836._002297.job.log.tgz.1
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user      7767 Dec 14 20:01 heartbeat.json
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user        95 Dec 14 20:02 pilot_heartbeat.json
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user      4832 Dec 14 20:02 pilotlog.txt
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user    575965 Dec 14 20:02 log.47898836._002297.job.log.1
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user       357 Dec 14 20:02 output.list
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user       620 Dec 14 20:02 runtime_log
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user    911360 Dec 14 20:02 result.tar.gz
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user      9220 Dec 14 20:02 runtime_log.err
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user       641 Dec 14 20:02 MCmNDmtjpo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmViUKDmCSSdMm.diag
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user     22212 Dec 14 20:02 stderr.txt
[2025-12-14 20:02:17] HITS file was successfully produced:
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user 196589411 Dec 14 20:01 shared/HITS.pool.root.1
[2025-12-14 20:02:17]  *** Contents of shared directory: ***
[2025-12-14 20:02:17] total 401088
[2025-12-14 20:02:17] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 14 18:58 start_atlas.sh
[2025-12-14 20:02:17] -rw-r--r-- 2 mf493845 unix-user    592407 Dec 14 18:58 input.tar.gz
[2025-12-14 20:02:17] -rw-r--r-- 2 mf493845 unix-user 212595037 Dec 14 18:58 ATLAS.root_0
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user 196589411 Dec 14 20:01 HITS.pool.root.1
[2025-12-14 20:02:17] -rw------- 1 mf493845 unix-user    911360 Dec 14 20:02 result.tar.gz
20:02:18 (10238): run_atlas exited; CPU time 27775.899532
20:02:18 (10238): called boinc_finish(0)

</stderr_txt>
]]>

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