Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:51:25 (6885): wrapper (7.7.26015): starting
18:51:25 (6885): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 18:51:25] Arguments: --nthreads 8
[2025-12-14 18:51:25] Threads: 8
[2025-12-14 18:51:25] Checking for CVMFS
[2025-12-14 18:51:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 18:51:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 18:51:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 18:51:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 18:51:25] 2.11.0.0 4492 91751 66320 154003 2 57 2815150 4096001 93 130560 1 5818074 99.675 4890198 440 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-14 18:51:25] CVMFS is ok
[2025-12-14 18:51:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 18:51:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 18:51:25] Further information can be found at the LHC@home message board.
[2025-12-14 18:51:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 18:51:25] Checking for apptainer binary...
[2025-12-14 18:51:25] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-14 18:51:25] apptainer is not installed, using version from CVMFS
[2025-12-14 18:51:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 18:51:25] WARNING: Environment variable TMPDIR already has value [/tmp/job_10975804/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node303
[2025-12-14 18:51:25] apptainer works
[2025-12-14 18:51:26] Set ATHENA_PROC_NUMBER=8
[2025-12-14 18:51:26] Set ATHENA_CORE_NUMBER=8
[2025-12-14 18:51:26] Starting ATLAS job with PandaID=6929436935
[2025-12-14 18:51:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10975804/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 19:57:43]  *** The last 200 lines of the pilot log: ***
[2025-12-14 19:57:43]  lfn=log.47898763._008698.job.log.tgz.1
[2025-12-14 19:57:43]  mtime=0
[2025-12-14 19:57:43]  protocol_id=None
[2025-12-14 19:57:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 19:57:43]  replicas=None
[2025-12-14 19:57:43]  scope=mc23_13p6TeV
[2025-12-14 19:57:43]  status=None
[2025-12-14 19:57:43]  status_code=0
[2025-12-14 19:57:43]  storage_token=
[2025-12-14 19:57:43]  surl=/tmp/job_10975804/atlas/pilot/slots/0/PanDA_Pilot-6929436935/log.47898763._008698.job.log.tgz.1
[2025-12-14 19:57:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/4d/log.47898763._008698.job.log.tgz.1
[2025-12-14 19:57:43]  workdir=None
[2025-12-14 19:57:43] ]
[2025-12-14 19:57:43] 2025-12-14 18:56:51,221 | INFO     | transferring file log.47898763._008698.job.log.tgz.1 from /tmp/job_10975804/atlas/pilot/slots/0/PanDA_Pilot-6929436935/log.47898763._008698.job.log.tgz.1 to /tmp/j
[2025-12-14 19:57:43] 2025-12-14 18:56:51,221 | INFO     | executing command: /usr/bin/env mv /tmp/job_10975804/atlas/pilot/slots/0/PanDA_Pilot-6929436935/log.47898763._008698.job.log.tgz.1 /tmp/job_10975804/atlas/pilot/sl
[2025-12-14 19:57:43] 2025-12-14 18:56:51,228 | INFO     | adding to output.list: log.47898763._008698.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/4d/log.47898763._008698.job.log.tg
[2025-12-14 19:57:43] 2025-12-14 18:56:51,229 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 19:57:43] 2025-12-14 18:56:51,229 | INFO     | summary of transferred files:
[2025-12-14 19:57:43] 2025-12-14 18:56:51,229 | INFO     |  -- lfn=log.47898763._008698.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 19:57:43] 2025-12-14 18:56:51,229 | INFO     | stage-out finished correctly
[2025-12-14 19:57:43] 2025-12-14 18:56:52,425 | INFO     | time since job start (3922s) is within the limit (174528.0s)
[2025-12-14 19:57:43] 2025-12-14 18:56:53,550 | INFO     | PID=11865 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 19:57:43] 2025-12-14 18:56:54,486 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 19:57:43] 2025-12-14 18:56:54,550 | INFO     | time since job start (3924s) is within the limit (174528.0s)
[2025-12-14 19:57:43] 2025-12-14 18:56:54,561 | INFO     | job 6929436935 has state=finished
[2025-12-14 19:57:43] 2025-12-14 18:56:54,561 | INFO     | preparing for final server update for job 6929436935 in state='finished'
[2025-12-14 19:57:43] 2025-12-14 18:56:54,561 | INFO     | this job has now completed (state=finished)
[2025-12-14 19:57:43] 2025-12-14 18:56:54,562 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 19:57:43] 2025-12-14 18:56:54,562 | INFO     | log transfer has been attempted: DONE
[2025-12-14 19:57:43] 2025-12-14 18:56:54,562 | INFO     | job 6929436935 has finished - writing final server update
[2025-12-14 19:57:43] 2025-12-14 18:56:54,562 | INFO     | total number of processed events: 400 (read)
[2025-12-14 19:57:43] 2025-12-14 18:56:54,562 | INFO     | executing command: lscpu
[2025-12-14 19:57:43] 2025-12-14 18:56:54,591 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 19:57:43] 2025-12-14 18:56:56,220 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 19:57:43] 2025-12-14 18:56:56,239 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2393.4626875
[2025-12-14 19:57:43] 2025-12-14 18:56:56,245 | INFO     | using path: /tmp/job_10975804/atlas/pilot/slots/0/PanDA_Pilot-6929436935/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 19:57:43] 2025-12-14 18:56:56,246 | INFO     | extracted standard info from prmon json
[2025-12-14 19:57:43] 2025-12-14 18:56:56,246 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 19:57:43] 2025-12-14 18:56:56,246 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 19:57:43] 2025-12-14 18:56:56,246 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 19:57:43] 2025-12-14 18:56:56,246 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 19:57:43] 2025-12-14 18:56:56,247 | INFO     | fitting pss+swap vs Time
[2025-12-14 19:57:43] 2025-12-14 18:56:56,247 | INFO     | sum of square deviations: 57407588.0
[2025-12-14 19:57:43] 2025-12-14 18:56:56,247 | INFO     | sum of deviations: -8313297648.0
[2025-12-14 19:57:43] 2025-12-14 18:56:56,247 | INFO     | mean x: 1765736721.0
[2025-12-14 19:57:43] 2025-12-14 18:56:56,247 | INFO     | mean y: 2688330.0877192984
[2025-12-14 19:57:43] 2025-12-14 18:56:56,247 | INFO     | intersect: 255702247239.90518
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | chi2: 0.1096038108401345
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | current memory leak: -144.81 B/s (using 57 data points, chi2=0.11)
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | could have reported an average CPU frequency of 2449 MHz (6 samples)
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | ..............................
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | . Timing measurements:
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | . get job = 0 s
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | . initial setup = 1 s
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | . payload setup = 2 s
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | . stage-in = 0 s
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | . payload execution = 3901 s
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | . stage-out = 0 s
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | . log creation = 0 s
[2025-12-14 19:57:43] 2025-12-14 18:56:56,248 | INFO     | ..............................
[2025-12-14 19:57:43] 2025-12-14 18:56:56,297 | INFO     | 
[2025-12-14 19:57:43] 2025-12-14 18:56:56,297 | INFO     | job summary report
[2025-12-14 19:57:43] 2025-12-14 18:56:56,297 | INFO     | --------------------------------------------------
[2025-12-14 19:57:43] 2025-12-14 18:56:56,297 | INFO     | PanDA job id: 6929436935
[2025-12-14 19:57:43] 2025-12-14 18:56:56,297 | INFO     | task id: 47898763
[2025-12-14 19:57:43] 2025-12-14 18:56:56,297 | INFO     | errors: (none)
[2025-12-14 19:57:43] 2025-12-14 18:56:56,297 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 19:57:43] 2025-12-14 18:56:56,297 | INFO     | pilot state: finished 
[2025-12-14 19:57:43] 2025-12-14 18:56:56,297 | INFO     | transexitcode: 0
[2025-12-14 19:57:43] 2025-12-14 18:56:56,297 | INFO     | exeerrorcode: 0
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | exeerrordiag: 
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | exitcode: 0
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | exitmsg: OK
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | cpuconsumptiontime: 28377 s
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | nevents: 400
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | neventsw: 0
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | pid: 20762
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | pgrp: 20762
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | corecount: 8
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | event service: False
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | sizes: {0: 2284078, 2: 2284340, 10: 2284368, 3907: 2310345, 3908: 2319373, 3911: 2319429, 3913: 2319751}
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | --------------------------------------------------
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | 
[2025-12-14 19:57:43] 2025-12-14 18:56:56,298 | INFO     | executing command: ls -lF /tmp/job_10975804/atlas/pilot/slots/0
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,306 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,307 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,307 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,307 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,307 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,307 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 19:57:43] 2025-12-14 18:56:56,307 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,307 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 19:57:43] 2025-12-14 18:56:56,307 | INFO     | job 6929436935 has completed (purged errors)
[2025-12-14 19:57:43] 2025-12-14 18:56:56,307 | INFO     | overall cleanup function is called
[2025-12-14 19:57:43] 2025-12-14 18:56:56,349 | WARNING  | process 20762 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 19:57:43] 2025-12-14 18:56:56,427 | INFO     | using path: /tmp/job_10975804/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 19:57:43] 2025-12-14 18:56:56,517 | INFO     | number of running child processes to parent process 20762: 1
[2025-12-14 19:57:43] 2025-12-14 18:56:56,517 | INFO     | maximum number of monitored processes: 6
[2025-12-14 19:57:43] 2025-12-14 18:56:56,517 | INFO     | aborting job monitoring since job object (job id=6929436935) has expired
[2025-12-14 19:57:43] 2025-12-14 18:56:57,313 | INFO     | --- collectZombieJob: --- 10, [20762]
[2025-12-14 19:57:43] 2025-12-14 18:56:57,313 | INFO     | zombie collector waiting for pid 20762
[2025-12-14 19:57:43] 2025-12-14 18:56:57,314 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 19:57:43] 2025-12-14 18:56:57,314 | INFO     | collected zombie processes
[2025-12-14 19:57:43] 2025-12-14 18:56:57,314 | INFO     | will attempt to kill all subprocesses of pid=20762
[2025-12-14 19:57:43] 2025-12-14 18:56:57,404 | INFO     | process IDs to be killed: [20762] (in reverse order)
[2025-12-14 19:57:43] 2025-12-14 18:56:57,434 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 19:57:43] 2025-12-14 18:56:57,434 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 19:57:43] 2025-12-14 18:56:57,438 | INFO     | did not find any defunct processes belonging to 20762
[2025-12-14 19:57:43] 2025-12-14 18:56:57,441 | INFO     | did not find any defunct processes belonging to 20762
[2025-12-14 19:57:43] 2025-12-14 18:56:57,441 | INFO     | ready for new job
[2025-12-14 19:57:43] 2025-12-14 18:56:57,441 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 19:57:43] 2025-12-14 18:56:57,441 | INFO     | ***************************************
[2025-12-14 19:57:43] 2025-12-14 18:56:57,441 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 19:57:43] 2025-12-14 18:56:57,441 | INFO     | ***************************************
[2025-12-14 19:57:43] 2025-12-14 18:56:57,442 | INFO     | 
[2025-12-14 19:57:43] 2025-12-14 18:56:57,455 | INFO     | architecture information:
[2025-12-14 19:57:43] 2025-12-14 18:56:57,455 | INFO     | executing command: cat /etc/os-release
[2025-12-14 19:57:43] 2025-12-14 18:56:57,460 | INFO     | cat /etc/os-release:
[2025-12-14 19:57:43] NAME="CentOS Linux"
[2025-12-14 19:57:43] VERSION="7 (Core)"
[2025-12-14 19:57:43] ID="centos"
[2025-12-14 19:57:43] ID_LIKE="rhel fedora"
[2025-12-14 19:57:43] VERSION_ID="7"
[2025-12-14 19:57:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 19:57:43] ANSI_COLOR="0;31"
[2025-12-14 19:57:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 19:57:43] HOME_URL="https://www.centos.org/"
[2025-12-14 19:57:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 19:57:43] 
[2025-12-14 19:57:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 19:57:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 19:57:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 19:57:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 19:57:43] 
[2025-12-14 19:57:43] 2025-12-14 18:56:57,461 | INFO     | ***************************************
[2025-12-14 19:57:43] 2025-12-14 18:56:57,963 | INFO     | executing command: df -mP /tmp/job_10975804/atlas/pilot/slots/0
[2025-12-14 19:57:43] 2025-12-14 18:56:57,969 | INFO     | sufficient remaining disk space (226570010624 B)
[2025-12-14 19:57:43] 2025-12-14 18:56:57,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 19:57:43] 2025-12-14 18:56:57,969 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 19:57:43] 2025-12-14 18:56:57,969 | INFO     | update_server=False
[2025-12-14 19:57:43] 2025-12-14 18:56:57,969 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 19:57:43] 2025-12-14 18:56:57,969 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 19:57:43] 2025-12-14 18:56:57,969 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 19:57:43] 2025-12-14 18:56:57,969 | INFO     | aborting loop
[2025-12-14 19:57:43] 2025-12-14 18:56:58,599 | INFO     | all job control threads have been joined
[2025-12-14 19:57:43] 2025-12-14 18:56:58,668 | INFO     | all data control threads have been joined
[2025-12-14 19:57:43] 2025-12-14 18:56:58,718 | INFO     | all payload control threads have been joined
[2025-12-14 19:57:43] 2025-12-14 18:56:58,974 | INFO     | [job] retrieve thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:56:58,975 | INFO     | [job] queue monitor thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:56:58,975 | INFO     | [job] job monitor thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:56:59,294 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 19:57:43] 2025-12-14 18:56:59,300 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:56:59,604 | INFO     | [job] control thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:56:59,673 | INFO     | [data] control thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:56:59,723 | INFO     | [payload] control thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:56:59,802 | INFO     | [job] validate thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:56:59,822 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:56:59,850 | INFO     | [payload] validate_post thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:56:59,883 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:57:00,180 | INFO     | [data] copytool_in thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:57:00,465 | INFO     | [payload] failed_post thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:57:00,539 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 19:57:43] 2025-12-14 18:57:01,300 | INFO     | [data] copytool_out thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:57:04,544 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:57:08,779 | INFO     | job.realtimelogging is not enabled
[2025-12-14 19:57:43] 2025-12-14 18:57:09,784 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 19:57:43] 2025-12-14 18:57:27,731 | INFO     | PID=11865 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 19:57:43] 2025-12-14 18:57:27,732 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 19:57:43] 2025-12-14 18:57:27,732 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 19:57:43] 2025-12-14 18:57:27,732 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 19:57:43] 2025-12-14 18:57:36,856 | INFO     | [monitor] cgroup control has ended
[2025-12-14 19:57:43] 2025-12-14 18:57:38,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456056616704)>']
[2025-12-14 19:57:43] 2025-12-14 18:57:38,787 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 19:57:43] 2025-12-14 18:57:38,787 | INFO     | [monitor] control thread has ended
[2025-12-14 19:57:43] 2025-12-14 18:57:43,636 | INFO     | all workflow threads have been joined
[2025-12-14 19:57:43] 2025-12-14 18:57:43,636 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 19:57:43] 2025-12-14 18:57:43,636 | INFO     | traces error code: 0
[2025-12-14 19:57:43] 2025-12-14 18:57:43,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 19:57:43] 2025-12-14 18:57:43,688 [wrapper] ==== pilot stdout END ====
[2025-12-14 19:57:43] 2025-12-14 18:57:43,689 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 19:57:43] 2025-12-14 18:57:43,690 [wrapper] pilotpid: 11865
[2025-12-14 19:57:43] 2025-12-14 18:57:43,691 [wrapper] Pilot exit status: 0
[2025-12-14 19:57:43] 2025-12-14 18:57:43,695 [wrapper] pandaids: 6929436935
[2025-12-14 19:57:43] 2025-12-14 18:57:43,715 [wrapper] cleanup supervisor_pilot 16127 11866
[2025-12-14 19:57:43] 2025-12-14 18:57:43,716 [wrapper] Test setup, not cleaning
[2025-12-14 19:57:43] 2025-12-14 18:57:43,718 [wrapper] apfmon messages muted
[2025-12-14 19:57:43] 2025-12-14 18:57:43,719 [wrapper] ==== wrapper stdout END ====
[2025-12-14 19:57:43] 2025-12-14 18:57:43,720 [wrapper] ==== wrapper stderr END ====
[2025-12-14 19:57:43]  *** Error codes and diagnostics ***
[2025-12-14 19:57:43]     "exeErrorCode": 0,
[2025-12-14 19:57:43]     "exeErrorDiag": "",
[2025-12-14 19:57:43]     "pilotErrorCode": 0,
[2025-12-14 19:57:43]     "pilotErrorDiag": "",
[2025-12-14 19:57:43]  *** Listing of results directory ***
[2025-12-14 19:57:43] total 441656
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user      5112 Dec 14 08:50 queuedata.json
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user    579449 Dec 14 08:50 pilot3.tar.gz
[2025-12-14 19:57:43] -rwx------ 1 mf493845 unix-user     36322 Dec 14 08:50 runpilot2-wrapper.sh
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user       100 Dec 14 18:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 19:57:43] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec 14 18:51 run_atlas
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user       105 Dec 14 18:51 job.xml
[2025-12-14 19:57:43] -rw-r--r-- 2 mf493845 unix-user 225896407 Dec 14 18:51 EVNT.47898761._000348.pool.root.1
[2025-12-14 19:57:43] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 14 18:51 start_atlas.sh
[2025-12-14 19:57:43] drwxrwx--x 2 mf493845 unix-user       100 Dec 14 18:51 shared
[2025-12-14 19:57:43] -rw-r--r-- 2 mf493845 unix-user    592396 Dec 14 18:51 input.tar.gz
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user      6390 Dec 14 18:51 init_data.xml
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user         0 Dec 14 18:51 boinc_setup_complete
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user      8192 Dec 14 18:51 boinc_mmap_file
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user         0 Dec 14 18:51 boinc_lockfile
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user      2504 Dec 14 18:51 pandaJob.out
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user    991024 Dec 14 18:51 agis_schedconf.cvmfs.json
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user   1516240 Dec 14 18:51 agis_ddmendpoints.agis.ALL.json
[2025-12-14 19:57:43] drwx------ 5 mf493845 unix-user       440 Dec 14 18:51 pilot3
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user 220643412 Dec 14 19:56 HITS.47898763._008698.pool.root.1
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user      1019 Dec 14 19:56 memory_monitor_summary.json
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user    325641 Dec 14 19:56 log.47898763._008698.job.log.tgz.1
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user      7775 Dec 14 19:56 heartbeat.json
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user        95 Dec 14 19:57 pilot_heartbeat.json
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user      4832 Dec 14 19:57 pilotlog.txt
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user    588102 Dec 14 19:57 log.47898763._008698.job.log.1
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user       357 Dec 14 19:57 output.list
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user       620 Dec 14 19:57 runtime_log
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user    931840 Dec 14 19:57 result.tar.gz
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user       643 Dec 14 19:57 SXSNDm92vo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4sQKDmKIa48m.diag
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user      9220 Dec 14 19:57 runtime_log.err
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user     22259 Dec 14 19:57 stderr.txt
[2025-12-14 19:57:43] HITS file was successfully produced:
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user 220643412 Dec 14 19:56 shared/HITS.pool.root.1
[2025-12-14 19:57:43]  *** Contents of shared directory: ***
[2025-12-14 19:57:43] total 437588
[2025-12-14 19:57:43] -rw-r--r-- 2 mf493845 unix-user 225896407 Dec 14 18:51 ATLAS.root_0
[2025-12-14 19:57:43] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 14 18:51 start_atlas.sh
[2025-12-14 19:57:43] -rw-r--r-- 2 mf493845 unix-user    592396 Dec 14 18:51 input.tar.gz
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user 220643412 Dec 14 19:56 HITS.pool.root.1
[2025-12-14 19:57:43] -rw------- 1 mf493845 unix-user    931840 Dec 14 19:57 result.tar.gz
19:57:45 (6885): run_atlas exited; CPU time 28426.750276
19:57:45 (6885): called boinc_finish(0)

</stderr_txt>
]]>

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