Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:36:41 (2560085): wrapper (7.7.26015): starting
02:36:41 (2560085): wrapper: running run_atlas (--nthreads 12)
[2025-12-15 02:36:41] Arguments: --nthreads 12
[2025-12-15 02:36:41] Threads: 12
[2025-12-15 02:36:41] Checking for CVMFS
[2025-12-15 02:36:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 02:36:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 02:36:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 02:36:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 02:36:44] 2.13.3.0 525390 2661 162184 154014 2 270 26990107 46080000 36034 130560 0 21020616 99.732 13281333 25102 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-12-15 02:36:44] CVMFS is ok
[2025-12-15 02:36:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 02:36:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 02:36:44] Further information can be found at the LHC@home message board.
[2025-12-15 02:36:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 02:36:44] Checking for apptainer binary...
[2025-12-15 02:36:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 02:36:44] Running /usr/bin/apptainer --version
[2025-12-15 02:36:44] apptainer version 1.4.4-1.el9
[2025-12-15 02:36:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 02:36:45] mff2102.farm.particle.cz
[2025-12-15 02:36:45] apptainer works
[2025-12-15 02:36:45] Set ATHENA_PROC_NUMBER=12
[2025-12-15 02:36:45] Set ATHENA_CORE_NUMBER=12
[2025-12-15 02:36:45] Starting ATLAS job with PandaID=6929302359
[2025-12-15 02:36:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 05:21:51]  *** The last 200 lines of the pilot log: ***
[2025-12-15 05:21:51] 2025-12-15 04:11:30,025 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-15 05:21:51] 2025-12-15 04:11:30,049 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2776.718614583333
[2025-12-15 05:21:51] 2025-12-15 04:11:30,086 | INFO     | using path: /scratch/.boinc/slots/4/PanDA_Pilot-6929302359/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 05:21:51] 2025-12-15 04:11:30,086 | INFO     | extracted standard info from prmon json
[2025-12-15 05:21:51] 2025-12-15 04:11:30,086 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 05:21:51] 2025-12-15 04:11:30,087 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 05:21:51] 2025-12-15 04:11:30,087 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 05:21:51] 2025-12-15 04:11:30,087 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 05:21:51] 2025-12-15 04:11:30,090 | INFO     | fitting pss+swap vs Time
[2025-12-15 05:21:51] 2025-12-15 04:11:30,090 | INFO     | sum of square deviations: 984947602.9931941
[2025-12-15 05:21:51] 2025-12-15 04:11:30,091 | INFO     | sum of deviations: 50978886406.299355
[2025-12-15 05:21:51] 2025-12-15 04:11:30,091 | INFO     | mean x: 1765767345.0068028
[2025-12-15 05:21:51] 2025-12-15 04:11:30,091 | INFO     | mean y: 2575283.700680272
[2025-12-15 05:21:51] 2025-12-15 04:11:30,091 | INFO     | intersect: -91389954255.4332
[2025-12-15 05:21:51] 2025-12-15 04:11:30,092 | INFO     | chi2: 5.164047509148282
[2025-12-15 05:21:51] 2025-12-15 04:11:30,092 | INFO     | sum of square deviations: 887820505.4929576
[2025-12-15 05:21:51] 2025-12-15 04:11:30,093 | INFO     | sum of deviations: 59701284705.831
[2025-12-15 05:21:51] 2025-12-15 04:11:30,093 | INFO     | mean x: 1765767192.5070422
[2025-12-15 05:21:51] 2025-12-15 04:11:30,093 | INFO     | mean y: 2588517.1690140846
[2025-12-15 05:21:51] 2025-12-15 04:11:30,093 | INFO     | intersect: -118736018252.83989
[2025-12-15 05:21:51] 2025-12-15 04:11:30,093 | INFO     | chi2: 4.39267069178134
[2025-12-15 05:21:51] 2025-12-15 04:11:30,093 | INFO     | current chi2=4.39267069178134 (change=14.937446179579537 %)
[2025-12-15 05:21:51] 2025-12-15 04:11:30,093 | INFO     | right removable region: 141
[2025-12-15 05:21:51] 2025-12-15 04:11:30,093 | INFO     | sum of square deviations: 887819895.4929576
[2025-12-15 05:21:51] 2025-12-15 04:11:30,094 | INFO     | sum of deviations: 4662624570.140837
[2025-12-15 05:21:51] 2025-12-15 04:11:30,094 | INFO     | mean x: 1765767497.5070422
[2025-12-15 05:21:51] 2025-12-15 04:11:30,094 | INFO     | mean y: 2647838.3591549294
[2025-12-15 05:21:51] 2025-12-15 04:11:30,094 | INFO     | intersect: -9270754301.903807
[2025-12-15 05:21:51] 2025-12-15 04:11:30,094 | INFO     | chi2: 1.5758589226441675
[2025-12-15 05:21:51] 2025-12-15 04:11:30,095 | INFO     | current chi2=1.5758589226441675 (change=69.48403515164256 %)
[2025-12-15 05:21:51] 2025-12-15 04:11:30,095 | INFO     | sum of square deviations: 797296962.9927018
[2025-12-15 05:21:51] 2025-12-15 04:11:30,095 | INFO     | sum of deviations: -12992598804.175182
[2025-12-15 05:21:51] 2025-12-15 04:11:30,095 | INFO     | mean x: 1765767650.0072992
[2025-12-15 05:21:51] 2025-12-15 04:11:30,095 | INFO     | mean y: 2677355.1751824818
[2025-12-15 05:21:51] 2025-12-15 04:11:30,096 | INFO     | intersect: 28777289228.550728
[2025-12-15 05:21:51] 2025-12-15 04:11:30,096 | INFO     | chi2: 0.9696114832081634
[2025-12-15 05:21:51] 2025-12-15 04:11:30,096 | INFO     | current chi2=0.9696114832081634 (change=38.47092088794145 %)
[2025-12-15 05:21:51] 2025-12-15 04:11:30,096 | INFO     | sum of square deviations: 713146242.9924244
[2025-12-15 05:21:51] 2025-12-15 04:11:30,097 | INFO     | sum of deviations: -18819365965.007576
[2025-12-15 05:21:51] 2025-12-15 04:11:30,097 | INFO     | mean x: 1765767802.5075758
[2025-12-15 05:21:51] 2025-12-15 04:11:30,097 | INFO     | mean y: 2687824.507575758
[2025-12-15 05:21:51] 2025-12-15 04:11:30,097 | INFO     | intersect: 46599905171.09086
[2025-12-15 05:21:51] 2025-12-15 04:11:30,097 | INFO     | chi2: 0.875646063002159
[2025-12-15 05:21:51] 2025-12-15 04:11:30,097 | INFO     | current chi2=0.875646063002159 (change=9.691038300732584 %)
[2025-12-15 05:21:51] 2025-12-15 04:11:30,097 | INFO     | left removable region: 30
[2025-12-15 05:21:51] 2025-12-15 04:11:30,097 | INFO     | sum of square deviations: 424050040.9909904
[2025-12-15 05:21:51] 2025-12-15 04:11:30,098 | INFO     | sum of deviations: -1405393840.6936939
[2025-12-15 05:21:51] 2025-12-15 04:11:30,098 | INFO     | mean x: 1765768077.0090091
[2025-12-15 05:21:51] 2025-12-15 04:11:30,098 | INFO     | mean y: 2689998.6936936937
[2025-12-15 05:21:51] 2025-12-15 04:11:30,098 | INFO     | intersect: 5854828519.238573
[2025-12-15 05:21:51] 2025-12-15 04:11:30,098 | INFO     | chi2: 0.010583558863969847
[2025-12-15 05:21:51] 2025-12-15 04:11:30,098 | INFO     | current memory leak: -3.31 B/s (using 111 data points, chi2=0.01)
[2025-12-15 05:21:51] 2025-12-15 04:11:30,099 | INFO     | could have reported an average CPU frequency of 2767 MHz (8 samples)
[2025-12-15 05:21:51] 2025-12-15 04:11:30,099 | INFO     | ..............................
[2025-12-15 05:21:51] 2025-12-15 04:11:30,099 | INFO     | . Timing measurements:
[2025-12-15 05:21:51] 2025-12-15 04:11:30,099 | INFO     | . get job = 0 s
[2025-12-15 05:21:51] 2025-12-15 04:11:30,099 | INFO     | . initial setup = 7 s
[2025-12-15 05:21:51] 2025-12-15 04:11:30,099 | INFO     | . payload setup = 59 s
[2025-12-15 05:21:51] 2025-12-15 04:11:30,099 | INFO     | . stage-in = 0 s
[2025-12-15 05:21:51] 2025-12-15 04:11:30,099 | INFO     | . payload execution = 8982 s
[2025-12-15 05:21:51] 2025-12-15 04:11:30,099 | INFO     | . stage-out = 2 s
[2025-12-15 05:21:51] 2025-12-15 04:11:30,099 | INFO     | . log creation = 0 s
[2025-12-15 05:21:51] 2025-12-15 04:11:30,099 | INFO     | ..............................
[2025-12-15 05:21:51] 2025-12-15 04:11:30,332 | INFO     | 
[2025-12-15 05:21:51] 2025-12-15 04:11:30,332 | INFO     | job summary report
[2025-12-15 05:21:51] 2025-12-15 04:11:30,332 | INFO     | --------------------------------------------------
[2025-12-15 05:21:51] 2025-12-15 04:11:30,332 | INFO     | PanDA job id: 6929302359
[2025-12-15 05:21:51] 2025-12-15 04:11:30,332 | INFO     | task id: 47898763
[2025-12-15 05:21:51] 2025-12-15 04:11:30,332 | INFO     | errors: (none)
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | pilot state: finished 
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | transexitcode: 0
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | exeerrorcode: 0
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | exeerrordiag: 
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | exitcode: 0
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | exitmsg: OK
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | cpuconsumptiontime: 54998 s
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | nevents: 400
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | neventsw: 0
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | pid: 2589378
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | pgrp: 2589378
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | corecount: 12
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | event service: False
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | sizes: {0: 2283125, 1: 2283982, 2: 2284010, 13: 2284010, 23: 2284066, 34: 2284094, 41: 2284512, 45: 2284540, 9046: 2312911, 9049: 2321911, 9051: 2321967, 9099: 232
[2025-12-15 05:21:51] 2025-12-15 04:11:30,333 | INFO     | --------------------------------------------------
[2025-12-15 05:21:51] 2025-12-15 04:11:30,334 | INFO     | 
[2025-12-15 05:21:51] 2025-12-15 04:11:30,334 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2025-12-15 05:21:51] 2025-12-15 04:11:30,475 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,476 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,477 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,477 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 05:21:51] 2025-12-15 04:11:30,477 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,477 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 05:21:51] 2025-12-15 04:11:30,477 | INFO     | job 6929302359 has completed (purged errors)
[2025-12-15 05:21:51] 2025-12-15 04:11:30,477 | INFO     | overall cleanup function is called
[2025-12-15 05:21:51] 2025-12-15 04:11:30,844 | INFO     | PID=2565239 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 05:21:51] 2025-12-15 04:11:30,845 | INFO     | .. there are 57 such processes running
[2025-12-15 05:21:51] 2025-12-15 04:11:31,538 | INFO     | --- collectZombieJob: --- 10, [2589378]
[2025-12-15 05:21:51] 2025-12-15 04:11:31,538 | INFO     | zombie collector waiting for pid 2589378
[2025-12-15 05:21:51] 2025-12-15 04:11:31,538 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 05:21:51] 2025-12-15 04:11:31,538 | INFO     | collected zombie processes
[2025-12-15 05:21:51] 2025-12-15 04:11:31,538 | INFO     | will attempt to kill all subprocesses of pid=2589378
[2025-12-15 05:21:51] 2025-12-15 04:11:32,432 | INFO     | process IDs to be killed: [2589378] (in reverse order)
[2025-12-15 05:21:51] 2025-12-15 04:11:32,973 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 05:21:51] 2025-12-15 04:11:32,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 05:21:51] 2025-12-15 04:11:33,024 | INFO     | did not find any defunct processes belonging to 2589378
[2025-12-15 05:21:51] 2025-12-15 04:11:33,076 | INFO     | did not find any defunct processes belonging to 2589378
[2025-12-15 05:21:51] 2025-12-15 04:11:33,076 | INFO     | ready for new job
[2025-12-15 05:21:51] 2025-12-15 04:11:33,076 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 05:21:51] 2025-12-15 04:11:33,083 | INFO     | ***************************************
[2025-12-15 05:21:51] 2025-12-15 04:11:33,083 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 05:21:51] 2025-12-15 04:11:33,083 | INFO     | ***************************************
[2025-12-15 05:21:51] 2025-12-15 04:11:33,083 | INFO     | 
[2025-12-15 05:21:51] 2025-12-15 04:11:33,098 | INFO     | architecture information:
[2025-12-15 05:21:51] 2025-12-15 04:11:33,102 | INFO     | executing command: cat /etc/os-release
[2025-12-15 05:21:51] 2025-12-15 04:11:33,189 | INFO     | cat /etc/os-release:
[2025-12-15 05:21:51] NAME="CentOS Linux"
[2025-12-15 05:21:51] VERSION="7 (Core)"
[2025-12-15 05:21:51] ID="centos"
[2025-12-15 05:21:51] ID_LIKE="rhel fedora"
[2025-12-15 05:21:51] VERSION_ID="7"
[2025-12-15 05:21:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 05:21:51] ANSI_COLOR="0;31"
[2025-12-15 05:21:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 05:21:51] HOME_URL="https://www.centos.org/"
[2025-12-15 05:21:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 05:21:51] 
[2025-12-15 05:21:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 05:21:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 05:21:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 05:21:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 05:21:51] 
[2025-12-15 05:21:51] 2025-12-15 04:11:33,190 | INFO     | ***************************************
[2025-12-15 05:21:51] 2025-12-15 04:11:33,693 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2025-12-15 05:21:51] 2025-12-15 04:11:33,813 | INFO     | sufficient remaining disk space (1472416710656 B)
[2025-12-15 05:21:51] 2025-12-15 04:11:33,814 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 05:21:51] 2025-12-15 04:11:33,814 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 05:21:51] 2025-12-15 04:11:33,814 | INFO     | update_server=False
[2025-12-15 05:21:51] 2025-12-15 04:11:33,814 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 05:21:51] 2025-12-15 04:11:33,815 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 05:21:51] 2025-12-15 04:11:33,815 | INFO     | aborting loop
[2025-12-15 05:21:51] 2025-12-15 04:11:33,820 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 05:21:51] 2025-12-15 04:11:33,824 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 05:21:51] 2025-12-15 04:11:33,961 | INFO     | all payload control threads have been joined
[2025-12-15 05:21:51] 2025-12-15 04:11:34,766 | INFO     | all data control threads have been joined
[2025-12-15 05:21:51] 2025-12-15 04:11:34,820 | INFO     | [job] retrieve thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:34,825 | INFO     | [job] job monitor thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:34,882 | INFO     | all job control threads have been joined
[2025-12-15 05:21:51] 2025-12-15 04:11:34,968 | INFO     | [payload] control thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:35,188 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:35,232 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:35,243 | INFO     | [data] copytool_in thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:35,345 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 05:21:51] 2025-12-15 04:11:35,358 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:35,655 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:35,678 | INFO     | [job] validate thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:35,772 | INFO     | [data] control thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:35,837 | INFO     | [data] copytool_out thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:35,888 | INFO     | [job] control thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:36,332 | INFO     | [payload] failed_post thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:36,351 | INFO     | [job] queue monitor thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:36,391 | INFO     | [payload] validate_post thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:37,453 | INFO     | [monitor] cgroup control has ended
[2025-12-15 05:21:51] 2025-12-15 04:11:37,831 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 05:21:51] 2025-12-15 04:11:37,888 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140490370455360)>', '<ExcThread(monitor, started 140489923753728)>']
[2025-12-15 05:21:51] 2025-12-15 04:11:42,914 | INFO     | all workflow threads have been joined
[2025-12-15 05:21:51] 2025-12-15 04:11:42,914 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 05:21:51] 2025-12-15 04:11:42,914 | INFO     | traces error code: 0
[2025-12-15 05:21:51] 2025-12-15 04:11:42,915 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 05:21:51] 2025-12-15 04:12:04,178 | INFO     | PID=2565239 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 05:21:51] 2025-12-15 04:12:04,179 | INFO     | .. there are 57 such processes running
[2025-12-15 05:21:51] 2025-12-15 04:12:04,179 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 05:21:51] 2025-12-15 04:12:04,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 05:21:51] 2025-12-15 04:12:04,180 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 05:21:51] 2025-12-15 04:12:04,180 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 05:21:51] 2025-12-15 04:12:04,180 | INFO     | [monitor] control thread has ended
[2025-12-15 05:21:51] 2025-12-15 04:12:04,507 [wrapper] ==== pilot stdout END ====
[2025-12-15 05:21:51] 2025-12-15 04:12:04,543 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 05:21:51] 2025-12-15 04:12:04,546 [wrapper] pilotpid: 2565239
[2025-12-15 05:21:51] 2025-12-15 04:12:04,579 [wrapper] Pilot exit status: 0
[2025-12-15 05:21:51] 2025-12-15 04:12:04,702 [wrapper] pandaids: 6929302359
[2025-12-15 05:21:51] 2025-12-15 04:12:05,275 [wrapper] cleanup supervisor_pilot 3320293 2565240
[2025-12-15 05:21:51] 2025-12-15 04:12:05,309 [wrapper] Test setup, not cleaning
[2025-12-15 05:21:51] 2025-12-15 04:12:05,336 [wrapper] apfmon messages muted
[2025-12-15 05:21:51] 2025-12-15 04:12:05,399 [wrapper] ==== wrapper stdout END ====
[2025-12-15 05:21:51] 2025-12-15 04:12:05,424 [wrapper] ==== wrapper stderr END ====
[2025-12-15 05:21:51]  *** Error codes and diagnostics ***
[2025-12-15 05:21:51]     "exeErrorCode": 0,
[2025-12-15 05:21:51]     "exeErrorDiag": "",
[2025-12-15 05:21:51]     "pilotErrorCode": 0,
[2025-12-15 05:21:51]     "pilotErrorDiag": "",
[2025-12-15 05:21:51]  *** Listing of results directory ***
[2025-12-15 05:21:51] total 437436
[2025-12-15 05:21:51] -rwx------ 1 boinc boinc     36322 Dec 13 12:39 runpilot2-wrapper.sh
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc    579449 Dec 13 12:43 pilot3.tar.gz
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc      5112 Dec 13 12:44 queuedata.json
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc       100 Dec 15 02:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 05:21:51] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 02:36 run_atlas
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc       105 Dec 15 02:36 job.xml
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc      6675 Dec 15 02:36 init_data.xml
[2025-12-15 05:21:51] -rw-r--r-- 2 boinc boinc 224802010 Dec 15 02:36 EVNT.47898761._000251.pool.root.1
[2025-12-15 05:21:51] -rw-r--r-- 2 boinc boinc     15847 Dec 15 02:36 start_atlas.sh
[2025-12-15 05:21:51] drwxrwx--x 2 boinc boinc      4096 Dec 15 02:36 shared
[2025-12-15 05:21:51] -rw-r--r-- 2 boinc boinc    592395 Dec 15 02:36 input.tar.gz
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc         0 Dec 15 02:36 boinc_lockfile
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc      2505 Dec 15 02:36 pandaJob.out
[2025-12-15 05:21:51] -rw------- 1 boinc boinc    991024 Dec 15 02:38 agis_schedconf.cvmfs.json
[2025-12-15 05:21:51] -rw------- 1 boinc boinc   1516240 Dec 15 02:38 agis_ddmendpoints.agis.ALL.json
[2025-12-15 05:21:51] drwx------ 5 boinc boinc      4096 Dec 15 02:38 pilot3
[2025-12-15 05:21:51] -rw------- 1 boinc boinc 215821798 Dec 15 05:09 HITS.47898763._004399.pool.root.1
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc       529 Dec 15 05:09 boinc_task_state.xml
[2025-12-15 05:21:51] -rw------- 1 boinc boinc      1027 Dec 15 05:10 memory_monitor_summary.json
[2025-12-15 05:21:51] -rw------- 1 boinc boinc    459146 Dec 15 05:10 log.47898763._004399.job.log.tgz.1
[2025-12-15 05:21:51] -rw------- 1 boinc boinc      7778 Dec 15 05:11 heartbeat.json
[2025-12-15 05:21:51] -rw------- 1 boinc boinc       823 Dec 15 05:12 pilotlog.txt
[2025-12-15 05:21:51] -rw------- 1 boinc boinc        95 Dec 15 05:12 pilot_heartbeat.json
[2025-12-15 05:21:51] -rw------- 1 boinc boinc   1237702 Dec 15 05:12 log.47898763._004399.job.log.1
[2025-12-15 05:21:51] -rw------- 1 boinc boinc       357 Dec 15 05:12 output.list
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc       620 Dec 15 05:12 runtime_log
[2025-12-15 05:21:51] -rw------- 1 boinc boinc   1720320 Dec 15 05:12 result.tar.gz
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc      8880 Dec 15 05:12 runtime_log.err
[2025-12-15 05:21:51] -rw------- 1 boinc boinc       664 Dec 15 05:12 lM2LDmZ9co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtLPKDm1Bu1yn.diag
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc        26 Dec 15 05:21 wrapper_checkpoint.txt
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc      8192 Dec 15 05:21 boinc_mmap_file
[2025-12-15 05:21:51] -rw-r--r-- 1 boinc boinc     21321 Dec 15 05:21 stderr.txt
[2025-12-15 05:21:51] HITS file was successfully produced:
[2025-12-15 05:21:51] -rw------- 1 boinc boinc 215821798 Dec 15 05:09 shared/HITS.pool.root.1
[2025-12-15 05:21:51]  *** Contents of shared directory: ***
[2025-12-15 05:21:51] total 432584
[2025-12-15 05:21:51] -rw-r--r-- 2 boinc boinc 224802010 Dec 15 02:36 ATLAS.root_0
[2025-12-15 05:21:51] -rw-r--r-- 2 boinc boinc     15847 Dec 15 02:36 start_atlas.sh
[2025-12-15 05:21:51] -rw-r--r-- 2 boinc boinc    592395 Dec 15 02:36 input.tar.gz
[2025-12-15 05:21:51] -rw------- 1 boinc boinc 215821798 Dec 15 05:09 HITS.pool.root.1
[2025-12-15 05:21:51] -rw------- 1 boinc boinc   1720320 Dec 15 05:12 result.tar.gz
05:21:54 (2560085): run_atlas exited; CPU time 55379.854628
05:21:54 (2560085): called boinc_finish(0)

</stderr_txt>
]]>

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