Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:51:24 (21750): wrapper (7.7.26015): starting
18:51:24 (21750): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 18:51:24] Arguments: --nthreads 8
[2025-12-14 18:51:24] Threads: 8
[2025-12-14 18:51:24] Checking for CVMFS
[2025-12-14 18:51:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 18:51:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 18:51:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 18:51:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 18:51:24] 2.11.0.0 7831 91922 84812 154003 2 188 3762184 4096000 3668 130560 1 8332559 99.671 5196682 460 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-14 18:51:24] CVMFS is ok
[2025-12-14 18:51:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 18:51:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 18:51:24] Further information can be found at the LHC@home message board.
[2025-12-14 18:51:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 18:51:24] Checking for apptainer binary...
[2025-12-14 18:51:24] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-14 18:51:24] apptainer is not installed, using version from CVMFS
[2025-12-14 18:51:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 18:51:25] WARNING: Environment variable TMPDIR already has value [/tmp/job_10975801/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node112
[2025-12-14 18:51:25] apptainer works
[2025-12-14 18:51:25] Set ATHENA_PROC_NUMBER=8
[2025-12-14 18:51:25] Set ATHENA_CORE_NUMBER=8
[2025-12-14 18:51:25] Starting ATLAS job with PandaID=6929437096
[2025-12-14 18:51:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10975801/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 19:56:42]  *** The last 200 lines of the pilot log: ***
[2025-12-14 19:56:42]  is_altstaged=None
[2025-12-14 19:56:42]  is_tar=False
[2025-12-14 19:56:42]  lfn=log.47898763._008859.job.log.tgz.1
[2025-12-14 19:56:42]  mtime=0
[2025-12-14 19:56:42]  protocol_id=None
[2025-12-14 19:56:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 19:56:42]  replicas=None
[2025-12-14 19:56:42]  scope=mc23_13p6TeV
[2025-12-14 19:56:42]  status=None
[2025-12-14 19:56:42]  status_code=0
[2025-12-14 19:56:42]  storage_token=
[2025-12-14 19:56:42]  surl=/tmp/job_10975801/atlas/pilot/slots/0/PanDA_Pilot-6929437096/log.47898763._008859.job.log.tgz.1
[2025-12-14 19:56:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/99/log.47898763._008859.job.log.tgz.1
[2025-12-14 19:56:42]  workdir=None
[2025-12-14 19:56:42] ]
[2025-12-14 19:56:42] 2025-12-14 18:55:32,897 | INFO     | transferring file log.47898763._008859.job.log.tgz.1 from /tmp/job_10975801/atlas/pilot/slots/0/PanDA_Pilot-6929437096/log.47898763._008859.job.log.tgz.1 to /tmp/j
[2025-12-14 19:56:42] 2025-12-14 18:55:32,897 | INFO     | executing command: /usr/bin/env mv /tmp/job_10975801/atlas/pilot/slots/0/PanDA_Pilot-6929437096/log.47898763._008859.job.log.tgz.1 /tmp/job_10975801/atlas/pilot/sl
[2025-12-14 19:56:42] 2025-12-14 18:55:32,905 | INFO     | adding to output.list: log.47898763._008859.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/99/log.47898763._008859.job.log.tg
[2025-12-14 19:56:42] 2025-12-14 18:55:32,905 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 19:56:42] 2025-12-14 18:55:32,905 | INFO     | summary of transferred files:
[2025-12-14 19:56:42] 2025-12-14 18:55:32,905 | INFO     |  -- lfn=log.47898763._008859.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 19:56:42] 2025-12-14 18:55:32,905 | INFO     | stage-out finished correctly
[2025-12-14 19:56:42] 2025-12-14 18:55:32,957 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 19:56:42] 2025-12-14 18:55:33,175 | INFO     | job 6929437096 has state=finished
[2025-12-14 19:56:42] 2025-12-14 18:55:33,175 | INFO     | preparing for final server update for job 6929437096 in state='finished'
[2025-12-14 19:56:42] 2025-12-14 18:55:33,176 | INFO     | this job has now completed (state=finished)
[2025-12-14 19:56:42] 2025-12-14 18:55:33,176 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 19:56:42] 2025-12-14 18:55:33,176 | INFO     | log transfer has been attempted: DONE
[2025-12-14 19:56:42] 2025-12-14 18:55:33,176 | INFO     | job 6929437096 has finished - writing final server update
[2025-12-14 19:56:42] 2025-12-14 18:55:33,176 | INFO     | total number of processed events: 400 (read)
[2025-12-14 19:56:42] 2025-12-14 18:55:33,177 | INFO     | executing command: lscpu
[2025-12-14 19:56:42] 2025-12-14 18:55:33,205 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 19:56:42] 2025-12-14 18:55:33,449 | INFO     | time since job start (3844s) is within the limit (174528.0s)
[2025-12-14 19:56:42] 2025-12-14 18:55:35,017 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 19:56:42] 2025-12-14 18:55:35,021 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2365.3383750000003
[2025-12-14 19:56:42] 2025-12-14 18:55:35,027 | INFO     | using path: /tmp/job_10975801/atlas/pilot/slots/0/PanDA_Pilot-6929437096/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 19:56:42] 2025-12-14 18:55:35,027 | INFO     | extracted standard info from prmon json
[2025-12-14 19:56:42] 2025-12-14 18:55:35,027 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 19:56:42] 2025-12-14 18:55:35,027 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 19:56:42] 2025-12-14 18:55:35,027 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 19:56:42] 2025-12-14 18:55:35,027 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 19:56:42] 2025-12-14 18:55:35,028 | INFO     | fitting pss+swap vs Time
[2025-12-14 19:56:42] 2025-12-14 18:55:35,028 | INFO     | sum of square deviations: 54438230.0
[2025-12-14 19:56:42] 2025-12-14 18:55:35,028 | INFO     | sum of deviations: -1085988917.0
[2025-12-14 19:56:42] 2025-12-14 18:55:35,028 | INFO     | mean x: 1765736689.5
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | mean y: 2594350.8928571427
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | intersect: 35227297195.516396
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | chi2: 0.012148643045132702
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | current memory leak: -19.95 B/s (using 56 data points, chi2=0.01)
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | could have reported an average CPU frequency of 2603 MHz (6 samples)
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | ..............................
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | . Timing measurements:
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | . get job = 0 s
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | . initial setup = 1 s
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | . payload setup = 2 s
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | . stage-in = 0 s
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | . payload execution = 3824 s
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | . stage-out = 0 s
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | . log creation = 0 s
[2025-12-14 19:56:42] 2025-12-14 18:55:35,029 | INFO     | ..............................
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | 
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | job summary report
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | --------------------------------------------------
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | PanDA job id: 6929437096
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | task id: 47898763
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | errors: (none)
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | pilot state: finished 
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | transexitcode: 0
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | exeerrorcode: 0
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | exeerrordiag: 
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | exitcode: 0
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | exitmsg: OK
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | cpuconsumptiontime: 28274 s
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | nevents: 400
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | neventsw: 0
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | pid: 2459
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | pgrp: 2459
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | corecount: 8
[2025-12-14 19:56:42] 2025-12-14 18:55:35,079 | INFO     | event service: False
[2025-12-14 19:56:42] 2025-12-14 18:55:35,080 | INFO     | sizes: {0: 2284078, 2: 2284340, 10: 2284368, 3830: 2319372, 3831: 2319372, 3833: 2319566}
[2025-12-14 19:56:42] 2025-12-14 18:55:35,080 | INFO     | --------------------------------------------------
[2025-12-14 19:56:42] 2025-12-14 18:55:35,080 | INFO     | 
[2025-12-14 19:56:42] 2025-12-14 18:55:35,080 | INFO     | executing command: ls -lF /tmp/job_10975801/atlas/pilot/slots/0
[2025-12-14 19:56:42] 2025-12-14 18:55:35,089 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,089 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,089 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,089 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,089 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,089 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,089 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | job 6929437096 has completed (purged errors)
[2025-12-14 19:56:42] 2025-12-14 18:55:35,090 | INFO     | overall cleanup function is called
[2025-12-14 19:56:42] 2025-12-14 18:55:36,096 | INFO     | --- collectZombieJob: --- 10, [2459]
[2025-12-14 19:56:42] 2025-12-14 18:55:36,096 | INFO     | zombie collector waiting for pid 2459
[2025-12-14 19:56:42] 2025-12-14 18:55:36,096 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 19:56:42] 2025-12-14 18:55:36,096 | INFO     | collected zombie processes
[2025-12-14 19:56:42] 2025-12-14 18:55:36,096 | INFO     | will attempt to kill all subprocesses of pid=2459
[2025-12-14 19:56:42] 2025-12-14 18:55:36,187 | INFO     | process IDs to be killed: [2459] (in reverse order)
[2025-12-14 19:56:42] 2025-12-14 18:55:36,219 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 19:56:42] 2025-12-14 18:55:36,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 19:56:42] 2025-12-14 18:55:36,222 | INFO     | did not find any defunct processes belonging to 2459
[2025-12-14 19:56:42] 2025-12-14 18:55:36,225 | INFO     | did not find any defunct processes belonging to 2459
[2025-12-14 19:56:42] 2025-12-14 18:55:36,225 | INFO     | ready for new job
[2025-12-14 19:56:42] 2025-12-14 18:55:36,225 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 19:56:42] 2025-12-14 18:55:36,226 | INFO     | ***************************************
[2025-12-14 19:56:42] 2025-12-14 18:55:36,226 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 19:56:42] 2025-12-14 18:55:36,226 | INFO     | ***************************************
[2025-12-14 19:56:42] 2025-12-14 18:55:36,226 | INFO     | 
[2025-12-14 19:56:42] 2025-12-14 18:55:36,239 | INFO     | architecture information:
[2025-12-14 19:56:42] 2025-12-14 18:55:36,239 | INFO     | executing command: cat /etc/os-release
[2025-12-14 19:56:42] 2025-12-14 18:55:36,245 | INFO     | cat /etc/os-release:
[2025-12-14 19:56:42] NAME="CentOS Linux"
[2025-12-14 19:56:42] VERSION="7 (Core)"
[2025-12-14 19:56:42] ID="centos"
[2025-12-14 19:56:42] ID_LIKE="rhel fedora"
[2025-12-14 19:56:42] VERSION_ID="7"
[2025-12-14 19:56:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 19:56:42] ANSI_COLOR="0;31"
[2025-12-14 19:56:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 19:56:42] HOME_URL="https://www.centos.org/"
[2025-12-14 19:56:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 19:56:42] 
[2025-12-14 19:56:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 19:56:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 19:56:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 19:56:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 19:56:42] 
[2025-12-14 19:56:42] 2025-12-14 18:55:36,246 | INFO     | ***************************************
[2025-12-14 19:56:42] 2025-12-14 18:55:36,748 | INFO     | executing command: df -mP /tmp/job_10975801/atlas/pilot/slots/0
[2025-12-14 19:56:42] 2025-12-14 18:55:36,754 | INFO     | sufficient remaining disk space (225720664064 B)
[2025-12-14 19:56:42] 2025-12-14 18:55:36,754 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 19:56:42] 2025-12-14 18:55:36,754 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 19:56:42] 2025-12-14 18:55:36,754 | INFO     | update_server=False
[2025-12-14 19:56:42] 2025-12-14 18:55:36,754 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 19:56:42] 2025-12-14 18:55:36,755 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 19:56:42] 2025-12-14 18:55:36,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 19:56:42] 2025-12-14 18:55:37,134 | INFO     | all payload control threads have been joined
[2025-12-14 19:56:42] 2025-12-14 18:55:37,220 | INFO     | all data control threads have been joined
[2025-12-14 19:56:42] 2025-12-14 18:55:37,760 | INFO     | [job] retrieve thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:37,760 | INFO     | [job] queue monitor thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:37,772 | INFO     | all job control threads have been joined
[2025-12-14 19:56:42] 2025-12-14 18:55:37,847 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:37,974 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:38,140 | INFO     | [payload] control thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:38,225 | INFO     | [data] control thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:38,318 | INFO     | [payload] validate_post thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:38,349 | INFO     | [data] copytool_in thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:38,714 | INFO     | [payload] failed_post thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:38,760 | INFO     | [data] copytool_out thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:38,778 | INFO     | [job] control thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:38,970 | INFO     | [job] validate thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:39,012 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 19:56:42] 2025-12-14 18:55:39,173 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:39,345 | WARNING  | process 2459 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 19:56:42] 2025-12-14 18:55:39,419 | INFO     | using path: /tmp/job_10975801/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 19:56:42] 2025-12-14 18:55:39,506 | INFO     | number of running child processes to parent process 2459: 1
[2025-12-14 19:56:42] 2025-12-14 18:55:39,506 | INFO     | maximum number of monitored processes: 6
[2025-12-14 19:56:42] 2025-12-14 18:55:39,506 | INFO     | aborting job monitoring since job object (job id=6929437096) has expired
[2025-12-14 19:56:42] 2025-12-14 18:55:39,506 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 19:56:42] 2025-12-14 18:55:39,506 | INFO     | will abort loop
[2025-12-14 19:56:42] 2025-12-14 18:55:40,512 | INFO     | [job] job monitor thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:43,017 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:55:47,455 | INFO     | job.realtimelogging is not enabled
[2025-12-14 19:56:42] 2025-12-14 18:55:48,460 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 19:56:42] 2025-12-14 18:56:06,629 | INFO     | PID=26498 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 19:56:42] 2025-12-14 18:56:06,629 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 19:56:42] 2025-12-14 18:56:06,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 19:56:42] 2025-12-14 18:56:06,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 19:56:42] 2025-12-14 18:56:35,894 | INFO     | [monitor] cgroup control has ended
[2025-12-14 19:56:42] 2025-12-14 18:56:37,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-14 19:56:42] 2025-12-14 18:56:37,783 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 19:56:42] 2025-12-14 18:56:37,783 | INFO     | [monitor] control thread has ended
[2025-12-14 19:56:42] 2025-12-14 18:56:42,369 | INFO     | all workflow threads have been joined
[2025-12-14 19:56:42] 2025-12-14 18:56:42,369 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 19:56:42] 2025-12-14 18:56:42,370 | INFO     | traces error code: 0
[2025-12-14 19:56:42] 2025-12-14 18:56:42,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 19:56:42] 2025-12-14 18:56:42,423 [wrapper] ==== pilot stdout END ====
[2025-12-14 19:56:42] 2025-12-14 18:56:42,425 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 19:56:42] 2025-12-14 18:56:42,426 [wrapper] pilotpid: 26498
[2025-12-14 19:56:42] 2025-12-14 18:56:42,427 [wrapper] Pilot exit status: 0
[2025-12-14 19:56:42] 2025-12-14 18:56:42,431 [wrapper] pandaids: 6929437096
[2025-12-14 19:56:42] 2025-12-14 18:56:42,455 [wrapper] cleanup supervisor_pilot 22285 26499
[2025-12-14 19:56:42] 2025-12-14 18:56:42,456 [wrapper] Test setup, not cleaning
[2025-12-14 19:56:42] 2025-12-14 18:56:42,457 [wrapper] apfmon messages muted
[2025-12-14 19:56:42] 2025-12-14 18:56:42,459 [wrapper] ==== wrapper stdout END ====
[2025-12-14 19:56:42] 2025-12-14 18:56:42,460 [wrapper] ==== wrapper stderr END ====
[2025-12-14 19:56:42]  *** Error codes and diagnostics ***
[2025-12-14 19:56:42]     "exeErrorCode": 0,
[2025-12-14 19:56:42]     "exeErrorDiag": "",
[2025-12-14 19:56:42]     "pilotErrorCode": 0,
[2025-12-14 19:56:42]     "pilotErrorDiag": "",
[2025-12-14 19:56:42]  *** Listing of results directory ***
[2025-12-14 19:56:42] total 445936
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user      5112 Dec 14 08:47 queuedata.json
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user    579449 Dec 14 08:47 pilot3.tar.gz
[2025-12-14 19:56:42] -rwx------ 1 mf493845 unix-user     36322 Dec 14 08:47 runpilot2-wrapper.sh
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user       100 Dec 14 18:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 19:56:42] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec 14 18:51 run_atlas
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user       105 Dec 14 18:51 job.xml
[2025-12-14 19:56:42] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 14 18:51 start_atlas.sh
[2025-12-14 19:56:42] drwxrwx--x 2 mf493845 unix-user       100 Dec 14 18:51 shared
[2025-12-14 19:56:42] -rw-r--r-- 2 mf493845 unix-user    592401 Dec 14 18:51 input.tar.gz
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user      6392 Dec 14 18:51 init_data.xml
[2025-12-14 19:56:42] -rw-r--r-- 2 mf493845 unix-user 224032482 Dec 14 18:51 EVNT.47898761._000355.pool.root.1
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user         0 Dec 14 18:51 boinc_setup_complete
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user      8192 Dec 14 18:51 boinc_mmap_file
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user         0 Dec 14 18:51 boinc_lockfile
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user      2504 Dec 14 18:51 pandaJob.out
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user    991024 Dec 14 18:51 agis_schedconf.cvmfs.json
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user   1516240 Dec 14 18:51 agis_ddmendpoints.agis.ALL.json
[2025-12-14 19:56:42] drwx------ 5 mf493845 unix-user       440 Dec 14 18:51 pilot3
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user 226937064 Dec 14 19:55 HITS.47898763._008859.pool.root.1
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user        95 Dec 14 19:55 pilot_heartbeat.json
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user      1019 Dec 14 19:55 memory_monitor_summary.json
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user    306212 Dec 14 19:55 log.47898763._008859.job.log.tgz.1
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user      7769 Dec 14 19:55 heartbeat.json
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user      5362 Dec 14 19:56 pilotlog.txt
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user    581663 Dec 14 19:56 log.47898763._008859.job.log.1
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user       357 Dec 14 19:56 output.list
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user       620 Dec 14 19:56 runtime_log
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user    911360 Dec 14 19:56 result.tar.gz
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user      9220 Dec 14 19:56 runtime_log.err
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user       642 Dec 14 19:56 IBTMDmD0vo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm02UKDmzfVBRm.diag
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user     21982 Dec 14 19:56 stderr.txt
[2025-12-14 19:56:42] HITS file was successfully produced:
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user 226937064 Dec 14 19:55 shared/HITS.pool.root.1
[2025-12-14 19:56:42]  *** Contents of shared directory: ***
[2025-12-14 19:56:42] total 441892
[2025-12-14 19:56:42] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 14 18:51 start_atlas.sh
[2025-12-14 19:56:42] -rw-r--r-- 2 mf493845 unix-user    592401 Dec 14 18:51 input.tar.gz
[2025-12-14 19:56:42] -rw-r--r-- 2 mf493845 unix-user 224032482 Dec 14 18:51 ATLAS.root_0
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user 226937064 Dec 14 19:55 HITS.pool.root.1
[2025-12-14 19:56:42] -rw------- 1 mf493845 unix-user    911360 Dec 14 19:56 result.tar.gz
19:56:43 (21750): run_atlas exited; CPU time 28325.809700
19:56:43 (21750): called boinc_finish(0)

</stderr_txt>
]]>

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