Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:16:06 (2899115): wrapper (7.7.26015): starting
00:16:06 (2899115): wrapper: running run_atlas (--nthreads 3)
[2025-12-15 00:16:06] Arguments: --nthreads 3
[2025-12-15 00:16:06] Threads: 3
[2025-12-15 00:16:06] Checking for CVMFS
[2025-12-15 00:16:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 00:16:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 00:16:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 00:16:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 00:16:06] 2.9.2.0 2238870 2559 80320 154011 0 56 20777727 36864000 0 130560 0 1743451 99.990 90075 16524 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 00:16:06] CVMFS is ok
[2025-12-15 00:16:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 00:16:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 00:16:06] Further information can be found at the LHC@home message board.
[2025-12-15 00:16:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 00:16:06] Checking for apptainer binary...
[2025-12-15 00:16:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 00:16:06] Running /usr/bin/apptainer --version
[2025-12-15 00:16:06] apptainer version 1.4.1-1.1
[2025-12-15 00:16:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 00:16:06] magicA161a
[2025-12-15 00:16:06] apptainer works
[2025-12-15 00:16:06] Set ATHENA_PROC_NUMBER=3
[2025-12-15 00:16:06] Set ATHENA_CORE_NUMBER=3
[2025-12-15 00:16:06] Starting ATLAS job with PandaID=6929410335
[2025-12-15 00:16:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 02:08:26]  *** The last 200 lines of the pilot log: ***
[2025-12-15 02:08:26] 2025-12-15 01:07:26,929 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,929 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,929 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,929 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | job 6929410335 has completed (purged errors)
[2025-12-15 02:08:26] 2025-12-15 01:07:26,930 | INFO     | overall cleanup function is called
[2025-12-15 02:08:26] 2025-12-15 01:07:27,733 | INFO     | PID=2902836 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 02:08:26] 2025-12-15 01:07:27,937 | INFO     | --- collectZombieJob: --- 10, [2909282]
[2025-12-15 02:08:26] 2025-12-15 01:07:27,937 | INFO     | zombie collector waiting for pid 2909282
[2025-12-15 02:08:26] 2025-12-15 01:07:27,937 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 02:08:26] 2025-12-15 01:07:27,937 | INFO     | collected zombie processes
[2025-12-15 02:08:26] 2025-12-15 01:07:27,937 | INFO     | will attempt to kill all subprocesses of pid=2909282
[2025-12-15 02:08:26] 2025-12-15 01:07:27,979 | INFO     | process IDs to be killed: [2909282] (in reverse order)
[2025-12-15 02:08:26] 2025-12-15 01:07:28,002 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 02:08:26] 2025-12-15 01:07:28,002 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 02:08:26] 2025-12-15 01:07:28,003 | INFO     | did not find any defunct processes belonging to 2909282
[2025-12-15 02:08:26] 2025-12-15 01:07:28,004 | INFO     | did not find any defunct processes belonging to 2909282
[2025-12-15 02:08:26] 2025-12-15 01:07:28,005 | INFO     | ready for new job
[2025-12-15 02:08:26] 2025-12-15 01:07:28,005 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 02:08:26] 2025-12-15 01:07:28,005 | INFO     | ***************************************
[2025-12-15 02:08:26] 2025-12-15 01:07:28,005 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 02:08:26] 2025-12-15 01:07:28,005 | INFO     | ***************************************
[2025-12-15 02:08:26] 2025-12-15 01:07:28,005 | INFO     | 
[2025-12-15 02:08:26] 2025-12-15 01:07:28,006 | INFO     | architecture information:
[2025-12-15 02:08:26] 2025-12-15 01:07:28,006 | INFO     | executing command: cat /etc/os-release
[2025-12-15 02:08:26] 2025-12-15 01:07:28,014 | INFO     | cat /etc/os-release:
[2025-12-15 02:08:26] NAME="CentOS Linux"
[2025-12-15 02:08:26] VERSION="7 (Core)"
[2025-12-15 02:08:26] ID="centos"
[2025-12-15 02:08:26] ID_LIKE="rhel fedora"
[2025-12-15 02:08:26] VERSION_ID="7"
[2025-12-15 02:08:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 02:08:26] ANSI_COLOR="0;31"
[2025-12-15 02:08:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 02:08:26] HOME_URL="https://www.centos.org/"
[2025-12-15 02:08:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 02:08:26] 
[2025-12-15 02:08:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 02:08:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 02:08:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 02:08:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 02:08:26] 
[2025-12-15 02:08:26] 2025-12-15 01:07:28,014 | INFO     | ***************************************
[2025-12-15 02:08:26] 2025-12-15 01:07:28,517 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 02:08:26] 2025-12-15 01:07:28,530 | INFO     | sufficient remaining disk space (384652279808 B)
[2025-12-15 02:08:26] 2025-12-15 01:07:28,530 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 02:08:26] 2025-12-15 01:07:28,530 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 02:08:26] 2025-12-15 01:07:28,531 | INFO     | update_server=False
[2025-12-15 02:08:26] 2025-12-15 01:07:28,531 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 02:08:26] 2025-12-15 01:07:28,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 02:08:26] 2025-12-15 01:07:28,531 | INFO     | aborting loop
[2025-12-15 02:08:26] 2025-12-15 01:07:28,531 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 02:08:26] 2025-12-15 01:07:28,531 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 02:08:26] 2025-12-15 01:07:28,531 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-15 02:08:26] 2025-12-15 01:07:28,531 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 02:08:26] 2025-12-15 01:07:28,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 02:08:26] 2025-12-15 01:07:28,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 02:08:26] 2025-12-15 01:07:28,748 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 02:08:26] 2025-12-15 01:07:29,157 | INFO     | all data control threads have been joined
[2025-12-15 02:08:26] 2025-12-15 01:07:29,492 | INFO     | all job control threads have been joined
[2025-12-15 02:08:26] 2025-12-15 01:07:29,536 | INFO     | [job] retrieve thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:29,536 | INFO     | [job] job monitor thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:29,536 | INFO     | [job] queue monitor thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:29,936 | INFO     | [data] copytool_in thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:30,039 | INFO     | all payload control threads have been joined
[2025-12-15 02:08:26] 2025-12-15 01:07:30,149 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:30,163 | INFO     | [data] control thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:30,498 | INFO     | [job] control thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:30,498 | INFO     | [job] validate thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:30,537 | INFO     | [data] copytool_out thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:30,541 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:30,587 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:30,778 | INFO     | [payload] validate_post thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:30,884 | INFO     | [payload] failed_post thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:31,045 | INFO     | [payload] control thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:32,755 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:07:38,984 | INFO     | job.realtimelogging is not enabled
[2025-12-15 02:08:26] 2025-12-15 01:07:39,990 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 02:08:26] 2025-12-15 01:08:20,116 | INFO     | [monitor] cgroup control has ended
[2025-12-15 02:08:26] 2025-12-15 01:08:20,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140477102307136)>', '<ExcThread(monitor, started 140476745238272)>']
[2025-12-15 02:08:26] 2025-12-15 01:08:21,800 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 02:08:26] 2025-12-15 01:08:21,800 | INFO     | [monitor] control thread has ended
[2025-12-15 02:08:26] 2025-12-15 01:08:26,020 | INFO     | all workflow threads have been joined
[2025-12-15 02:08:26] 2025-12-15 01:08:26,020 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 02:08:26] 2025-12-15 01:08:26,020 | INFO     | traces error code: 0
[2025-12-15 02:08:26] 2025-12-15 01:08:26,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 02:08:26] 2025-12-15 01:08:26,070 [wrapper] ==== pilot stdout END ====
[2025-12-15 02:08:26] 2025-12-15 01:08:26,073 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 02:08:26] 2025-12-15 01:08:26,075 [wrapper] pilotpid: 2902836
[2025-12-15 02:08:26] 2025-12-15 01:08:26,077 [wrapper] Pilot exit status: 0
[2025-12-15 02:08:26] 2025-12-15 01:08:26,084 [wrapper] pandaids: 6929410335
[2025-12-15 02:08:26] 2025-12-15 01:08:26,100 [wrapper] cleanup supervisor_pilot 2923871 2902837
[2025-12-15 02:08:26] 2025-12-15 01:08:26,102 [wrapper] Test setup, not cleaning
[2025-12-15 02:08:26] 2025-12-15 01:08:26,104 [wrapper] apfmon messages muted
[2025-12-15 02:08:26] 2025-12-15 01:08:26,107 [wrapper] ==== wrapper stdout END ====
[2025-12-15 02:08:26] 2025-12-15 01:08:26,109 [wrapper] ==== wrapper stderr END ====
[2025-12-15 02:08:26]  *** Error codes and diagnostics ***
[2025-12-15 02:08:26]     "exeErrorCode": 0,
[2025-12-15 02:08:26]     "exeErrorDiag": "",
[2025-12-15 02:08:26]     "pilotErrorCode": 0,
[2025-12-15 02:08:26]     "pilotErrorDiag": "",
[2025-12-15 02:08:26]  *** Listing of results directory ***
[2025-12-15 02:08:26] total 412076
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc    579449 Dec 14 05:46 pilot3.tar.gz
[2025-12-15 02:08:26] -rwx------ 1 boinc boinc     36322 Dec 14 05:49 runpilot2-wrapper.sh
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc      5112 Dec 14 05:51 queuedata.json
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc       100 Dec 15 00:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 02:08:26] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 00:16 run_atlas
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc       105 Dec 15 00:16 job.xml
[2025-12-15 02:08:26] -rw-r--r-- 2 boinc boinc 214899454 Dec 15 00:16 EVNT.47898833._000107.pool.root.1
[2025-12-15 02:08:26] drwxrwx--x 2 boinc boinc      4096 Dec 15 00:16 shared
[2025-12-15 02:08:26] -rw-r--r-- 2 boinc boinc    592405 Dec 15 00:16 input.tar.gz
[2025-12-15 02:08:26] -rw-r--r-- 2 boinc boinc     15847 Dec 15 00:16 start_atlas.sh
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc         0 Dec 15 00:16 boinc_setup_complete
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc      6448 Dec 15 00:16 init_data.xml
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc         0 Dec 15 00:16 boinc_lockfile
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc      2551 Dec 15 00:16 pandaJob.out
[2025-12-15 02:08:26] -rw------- 1 boinc boinc    991024 Dec 15 00:16 agis_schedconf.cvmfs.json
[2025-12-15 02:08:26] -rw------- 1 boinc boinc   1516240 Dec 15 00:16 agis_ddmendpoints.agis.ALL.json
[2025-12-15 02:08:26] drwx------ 5 boinc boinc      4096 Dec 15 00:16 pilot3
[2025-12-15 02:08:26] -rw------- 1 boinc boinc        95 Dec 15 02:06 pilot_heartbeat.json
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc       529 Dec 15 02:07 boinc_task_state.xml
[2025-12-15 02:08:26] -rw------- 1 boinc boinc 200657639 Dec 15 02:07 HITS.47898836._002673.pool.root.1
[2025-12-15 02:08:26] -rw------- 1 boinc boinc      1015 Dec 15 02:07 memory_monitor_summary.json
[2025-12-15 02:08:26] -rw------- 1 boinc boinc    288563 Dec 15 02:07 log.47898836._002673.job.log.tgz.1
[2025-12-15 02:08:26] -rw------- 1 boinc boinc      7765 Dec 15 02:07 heartbeat.json
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc        27 Dec 15 02:08 wrapper_checkpoint.txt
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc      8192 Dec 15 02:08 boinc_mmap_file
[2025-12-15 02:08:26] -rw------- 1 boinc boinc      4628 Dec 15 02:08 pilotlog.txt
[2025-12-15 02:08:26] -rw------- 1 boinc boinc    965013 Dec 15 02:08 log.47898836._002673.job.log.1
[2025-12-15 02:08:26] -rw------- 1 boinc boinc       357 Dec 15 02:08 output.list
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc       620 Dec 15 02:08 runtime_log
[2025-12-15 02:08:26] -rw------- 1 boinc boinc   1269760 Dec 15 02:08 result.tar.gz
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc      8917 Dec 15 02:08 runtime_log.err
[2025-12-15 02:08:26] -rw------- 1 boinc boinc       663 Dec 15 02:08 XHsMDmIEto8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzlQKDmx794Ro.diag
[2025-12-15 02:08:26] -rw-r--r-- 1 boinc boinc     12886 Dec 15 02:08 stderr.txt
[2025-12-15 02:08:26] HITS file was successfully produced:
[2025-12-15 02:08:26] -rw------- 1 boinc boinc 200657639 Dec 15 02:07 shared/HITS.pool.root.1
[2025-12-15 02:08:26]  *** Contents of shared directory: ***
[2025-12-15 02:08:26] total 407664
[2025-12-15 02:08:26] -rw-r--r-- 2 boinc boinc 214899454 Dec 15 00:16 ATLAS.root_0
[2025-12-15 02:08:26] -rw-r--r-- 2 boinc boinc    592405 Dec 15 00:16 input.tar.gz
[2025-12-15 02:08:26] -rw-r--r-- 2 boinc boinc     15847 Dec 15 00:16 start_atlas.sh
[2025-12-15 02:08:26] -rw------- 1 boinc boinc 200657639 Dec 15 02:07 HITS.pool.root.1
[2025-12-15 02:08:26] -rw------- 1 boinc boinc   1269760 Dec 15 02:08 result.tar.gz
02:08:28 (2899115): run_atlas exited; CPU time 19368.081947
02:08:28 (2899115): called boinc_finish(0)

</stderr_txt>
]]>

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