Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:21:55 (1998189): wrapper (7.7.26015): starting
18:21:55 (1998189): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 18:21:55] Arguments: --nthreads 4
[2025-12-14 18:21:55] Threads: 4
[2025-12-14 18:21:55] Checking for CVMFS
[2025-12-14 18:21:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 18:21:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 18:21:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 18:21:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 18:21:56] 2.9.2.0 1875135 34 61004 154003 1 186 19273587 36864000 0 130560 0 325468 99.999 1415 307 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 18:21:56] CVMFS is ok
[2025-12-14 18:21:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 18:21:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 18:21:56] Further information can be found at the LHC@home message board.
[2025-12-14 18:21:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 18:21:56] Checking for apptainer binary...
[2025-12-14 18:21:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 18:21:56] Running /usr/bin/apptainer --version
[2025-12-14 18:21:56] apptainer version 1.4.1-1.1
[2025-12-14 18:21:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 18:21:56] thA325
[2025-12-14 18:21:56] apptainer works
[2025-12-14 18:21:56] Set ATHENA_PROC_NUMBER=4
[2025-12-14 18:21:56] Set ATHENA_CORE_NUMBER=4
[2025-12-14 18:21:56] Starting ATLAS job with PandaID=6929432015
[2025-12-14 18:21:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 18:26:12]  *** The last 200 lines of the pilot log: ***
[2025-12-14 18:26:12] 2025-12-14 17:25:10,680 | INFO     | ***************************************
[2025-12-14 18:26:12] 2025-12-14 17:25:11,183 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-14 18:26:12] 2025-12-14 17:25:11,200 | INFO     | sufficient remaining disk space (241818402816 B)
[2025-12-14 18:26:12] 2025-12-14 17:25:11,200 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 18:26:12] 2025-12-14 17:25:11,200 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 18:26:12] 2025-12-14 17:25:11,200 | INFO     | update_server=False
[2025-12-14 18:26:12] 2025-12-14 17:25:11,200 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 18:26:12] 2025-12-14 17:25:11,200 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 18:26:12] 2025-12-14 17:25:11,200 | INFO     | aborting loop
[2025-12-14 18:26:12] 2025-12-14 17:25:11,806 | INFO     | all data control threads have been joined
[2025-12-14 18:26:12] 2025-12-14 17:25:11,810 | INFO     | all job control threads have been joined
[2025-12-14 18:26:12] 2025-12-14 17:25:11,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 18:26:12] 2025-12-14 17:25:11,999 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 18:26:12] 2025-12-14 17:25:12,206 | INFO     | [job] job monitor thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:12,206 | INFO     | [job] retrieve thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:12,214 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:12,296 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:12,433 | INFO     | [data] copytool_in thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:12,534 | INFO     | [payload] validate_post thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:12,630 | INFO     | all payload control threads have been joined
[2025-12-14 18:26:12] 2025-12-14 17:25:12,812 | INFO     | [data] control thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:12,816 | INFO     | [job] control thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:12,901 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:13,180 | INFO     | [payload] failed_post thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:13,411 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:13,615 | INFO     | [job] validate thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:13,635 | INFO     | [payload] control thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:14,006 | INFO     | [data] copytool_out thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:14,140 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 18:26:12] 2025-12-14 17:25:15,146 | INFO     | [job] queue monitor thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:15,986 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 18:26:12] 2025-12-14 17:25:42,212 | INFO     | PID=2001973 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 18:26:12] 2025-12-14 17:25:42,212 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 18:26:12] 2025-12-14 17:25:42,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 18:26:12] 2025-12-14 17:25:42,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 18:26:12] 2025-12-14 17:26:07,396 | INFO     | [monitor] cgroup control has ended
[2025-12-14 18:26:12] 2025-12-14 17:26:07,399 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139904235411264)>', '<ExcThread(monitor, started 139903878797056)>']
[2025-12-14 18:26:12] 2025-12-14 17:26:08,349 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 18:26:12] 2025-12-14 17:26:08,349 | INFO     | [monitor] control thread has ended
[2025-12-14 18:26:12] 2025-12-14 17:26:12,425 | INFO     | all workflow threads have been joined
[2025-12-14 18:26:12] 2025-12-14 17:26:12,425 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 18:26:12] 2025-12-14 17:26:12,425 | INFO     | traces error code: 0
[2025-12-14 18:26:12] 2025-12-14 17:26:12,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 18:26:12] 2025-12-14 17:26:12,491 [wrapper] ==== pilot stdout END ====
[2025-12-14 18:26:12] 2025-12-14 17:26:12,494 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 18:26:12] 2025-12-14 17:26:12,498 [wrapper] pilotpid: 2001973
[2025-12-14 18:26:12] 2025-12-14 17:26:12,502 [wrapper] Pilot exit status: 0
[2025-12-14 18:26:12] 2025-12-14 17:26:12,512 [wrapper] pandaids: 6929432015
[2025-12-14 18:26:12] 2025-12-14 17:26:12,534 [wrapper] cleanup supervisor_pilot 2001979 2001974
[2025-12-14 18:26:12] 2025-12-14 17:26:12,538 [wrapper] Test setup, not cleaning
[2025-12-14 18:26:12] 2025-12-14 17:26:12,542 [wrapper] apfmon messages muted
[2025-12-14 18:26:12] 2025-12-14 17:26:12,545 [wrapper] ==== wrapper stdout END ====
[2025-12-14 18:26:12] 2025-12-14 17:26:12,549 [wrapper] ==== wrapper stderr END ====
[2025-12-14 18:26:12]  *** Error codes and diagnostics ***
[2025-12-14 18:26:12]     "exeErrorCode": 65,
[2025-12-14 18:26:12]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-14 18:26:12]     "pilotErrorCode": 1305,
[2025-12-14 18:26:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-14 18:26:12]  *** Listing of results directory ***
[2025-12-14 18:26:12] total 224284
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc    579449 Dec 14 05:46 pilot3.tar.gz
[2025-12-14 18:26:12] -rwx------ 1 boinc boinc     36322 Dec 14 05:47 runpilot2-wrapper.sh
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc      5112 Dec 14 05:48 queuedata.json
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc       100 Dec 14 18:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 18:26:12] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 18:21 run_atlas
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc       105 Dec 14 18:21 job.xml
[2025-12-14 18:26:12] -rw-r--r-- 2 boinc boinc 225527728 Dec 14 18:21 EVNT.47898824._000017.pool.root.1
[2025-12-14 18:26:12] -rw-r--r-- 2 boinc boinc    592392 Dec 14 18:21 input.tar.gz
[2025-12-14 18:26:12] -rw-r--r-- 2 boinc boinc     15847 Dec 14 18:21 start_atlas.sh
[2025-12-14 18:26:12] drwxrwx--x 2 boinc boinc      4096 Dec 14 18:21 shared
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc         0 Dec 14 18:21 boinc_setup_complete
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc      6368 Dec 14 18:21 init_data.xml
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc         0 Dec 14 18:21 boinc_lockfile
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc      2511 Dec 14 18:21 pandaJob.out
[2025-12-14 18:26:12] -rw------- 1 boinc boinc    991024 Dec 14 18:22 agis_schedconf.cvmfs.json
[2025-12-14 18:26:12] -rw------- 1 boinc boinc   1516240 Dec 14 18:22 agis_ddmendpoints.agis.ALL.json
[2025-12-14 18:26:12] drwx------ 5 boinc boinc      4096 Dec 14 18:22 pilot3
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc       523 Dec 14 18:23 boinc_task_state.xml
[2025-12-14 18:26:12] -rw------- 1 boinc boinc       947 Dec 14 18:23 memory_monitor_summary.json
[2025-12-14 18:26:12] -rw------- 1 boinc boinc     33893 Dec 14 18:23 log.47898826._000356.job.log.tgz.1
[2025-12-14 18:26:12] -rw------- 1 boinc boinc        95 Dec 14 18:25 pilot_heartbeat.json
[2025-12-14 18:26:12] -rw------- 1 boinc boinc      8355 Dec 14 18:25 heartbeat.json
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc      8192 Dec 14 18:26 boinc_mmap_file
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc        23 Dec 14 18:26 wrapper_checkpoint.txt
[2025-12-14 18:26:12] -rw------- 1 boinc boinc      4752 Dec 14 18:26 pilotlog.txt
[2025-12-14 18:26:12] -rw------- 1 boinc boinc     84964 Dec 14 18:26 log.47898826._000356.job.log.1
[2025-12-14 18:26:12] -rw------- 1 boinc boinc       188 Dec 14 18:26 output.list
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc       620 Dec 14 18:26 runtime_log
[2025-12-14 18:26:12] -rw------- 1 boinc boinc    143360 Dec 14 18:26 result.tar.gz
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc      8744 Dec 14 18:26 runtime_log.err
[2025-12-14 18:26:12] -rw------- 1 boinc boinc       648 Dec 14 18:26 ON2MDmMCto8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfsUKDmIRTRwn.diag
[2025-12-14 18:26:12] -rw-r--r-- 1 boinc boinc      8179 Dec 14 18:26 stderr.txt
[2025-12-14 18:26:12] No HITS result produced
[2025-12-14 18:26:12]  *** Contents of shared directory: ***
[2025-12-14 18:26:12] total 220984
[2025-12-14 18:26:12] -rw-r--r-- 2 boinc boinc 225527728 Dec 14 18:21 ATLAS.root_0
[2025-12-14 18:26:12] -rw-r--r-- 2 boinc boinc    592392 Dec 14 18:21 input.tar.gz
[2025-12-14 18:26:12] -rw-r--r-- 2 boinc boinc     15847 Dec 14 18:21 start_atlas.sh
[2025-12-14 18:26:12] -rw------- 1 boinc boinc    143360 Dec 14 18:26 result.tar.gz
18:26:14 (1998189): run_atlas exited; CPU time 28.042856
18:26:14 (1998189): called boinc_finish(0)

</stderr_txt>
]]>

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