Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:24:33 (19320): wrapper (7.7.26015): starting
12:24:33 (19320): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 12:24:33] Arguments: --nthreads 12
[2025-12-14 12:24:33] Threads: 12
[2025-12-14 12:24:33] Checking for CVMFS
[2025-12-14 12:24:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 12:24:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 12:24:33] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 12:24:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 12:24:33] 2.11.2.0 3103 103873 95652 154003 2 56 17357365 20275200 1 130560 0 45490169 99.930 5446461 33075 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 12:24:33] CVMFS is ok
[2025-12-14 12:24:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 12:24:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 12:24:33] Further information can be found at the LHC@home message board.
[2025-12-14 12:24:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 12:24:33] Checking for apptainer binary...
[2025-12-14 12:24:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 12:24:33] Running /usr/bin/apptainer --version
[2025-12-14 12:24:33] apptainer version 1.3.2-1.el7
[2025-12-14 12:24:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 12:24:35] c-115-41.aglt2.org
[2025-12-14 12:24:35] apptainer works
[2025-12-14 12:24:35] Set ATHENA_PROC_NUMBER=12
[2025-12-14 12:24:35] Set ATHENA_CORE_NUMBER=12
[2025-12-14 12:24:35] Starting ATLAS job with PandaID=6929435501
[2025-12-14 12:24:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 14:00:04]  *** The last 200 lines of the pilot log: ***
[2025-12-14 14:00:04] ]
[2025-12-14 14:00:04] 2025-12-14 18:59:01,967 | INFO     | transferring file log.47898763._007917.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929435501/log.47898763._007917.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 14:00:04] 2025-12-14 18:59:01,967 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929435501/log.47898763._007917.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._007917.job
[2025-12-14 14:00:04] 2025-12-14 18:59:01,990 | INFO     | adding to output.list: log.47898763._007917.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3f/0b/log.47898763._007917.job.log.tg
[2025-12-14 14:00:04] 2025-12-14 18:59:01,991 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 14:00:04] 2025-12-14 18:59:01,991 | INFO     | summary of transferred files:
[2025-12-14 14:00:04] 2025-12-14 18:59:01,991 | INFO     |  -- lfn=log.47898763._007917.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 14:00:04] 2025-12-14 18:59:01,992 | INFO     | stage-out finished correctly
[2025-12-14 14:00:04] 2025-12-14 18:59:02,067 | INFO     | time since job start (5653s) is within the limit (174528.0s)
[2025-12-14 14:00:04] 2025-12-14 18:59:03,116 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 14:00:04] 2025-12-14 18:59:03,378 | INFO     | job 6929435501 has state=finished
[2025-12-14 14:00:04] 2025-12-14 18:59:03,379 | INFO     | preparing for final server update for job 6929435501 in state='finished'
[2025-12-14 14:00:04] 2025-12-14 18:59:03,379 | INFO     | this job has now completed (state=finished)
[2025-12-14 14:00:04] 2025-12-14 18:59:03,379 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 14:00:04] 2025-12-14 18:59:03,379 | INFO     | log transfer has been attempted: DONE
[2025-12-14 14:00:04] 2025-12-14 18:59:03,380 | INFO     | job 6929435501 has finished - writing final server update
[2025-12-14 14:00:04] 2025-12-14 18:59:03,380 | INFO     | total number of processed events: 400 (read)
[2025-12-14 14:00:04] 2025-12-14 18:59:03,381 | INFO     | executing command: lscpu
[2025-12-14 14:00:04] 2025-12-14 18:59:03,408 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 14:00:04] 2025-12-14 18:59:04,074 | INFO     | time since job start (5655s) is within the limit (174528.0s)
[2025-12-14 14:00:04] 2025-12-14 18:59:04,090 | WARNING  | process 30226 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 14:00:04] 2025-12-14 18:59:04,090 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929435501/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 14:00:04] 2025-12-14 18:59:04,091 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929435501/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 14:00:04] 2025-12-14 18:59:04,091 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-14 14:00:04] 2025-12-14 18:59:04,091 | WARNING  | maxPSS not found in memory monitor output
[2025-12-14 14:00:04] 2025-12-14 18:59:04,092 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4317060 B
[2025-12-14 14:00:04] 2025-12-14 18:59:04,092 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15841 B
[2025-12-14 14:00:04] 2025-12-14 18:59:04,092 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 14:00:04] 2025-12-14 18:59:06,079 | INFO     | time since job start (5657s) is within the limit (174528.0s)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,031 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 14:00:04] 2025-12-14 18:59:08,039 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-12-14 14:00:04] 2025-12-14 18:59:08,041 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929435501/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,041 | INFO     | extracted standard info from prmon json
[2025-12-14 14:00:04] 2025-12-14 18:59:08,041 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 14:00:04] 2025-12-14 18:59:08,042 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 14:00:04] 2025-12-14 18:59:08,042 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 14:00:04] 2025-12-14 18:59:08,042 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 14:00:04] 2025-12-14 18:59:08,044 | INFO     | fitting pss+swap vs Time
[2025-12-14 14:00:04] 2025-12-14 18:59:08,044 | INFO     | sum of square deviations: 197203697.5
[2025-12-14 14:00:04] 2025-12-14 18:59:08,045 | INFO     | sum of deviations: -11828421611.0
[2025-12-14 14:00:04] 2025-12-14 18:59:08,045 | INFO     | mean x: 1765736015.5
[2025-12-14 14:00:04] 2025-12-14 18:59:08,045 | INFO     | mean y: 2838798.418604651
[2025-12-14 14:00:04] 2025-12-14 18:59:08,045 | INFO     | intersect: 105912972887.36606
[2025-12-14 14:00:04] 2025-12-14 18:59:08,045 | INFO     | chi2: 0.1396566753087717
[2025-12-14 14:00:04] 2025-12-14 18:59:08,045 | INFO     | current memory leak: -59.98 B/s (using 86 data points, chi2=0.14)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,046 | INFO     | could have reported an average CPU frequency of 2201 MHz (7 samples)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,046 | INFO     | ..............................
[2025-12-14 14:00:04] 2025-12-14 18:59:08,046 | INFO     | . Timing measurements:
[2025-12-14 14:00:04] 2025-12-14 18:59:08,046 | INFO     | . get job = 0 s
[2025-12-14 14:00:04] 2025-12-14 18:59:08,046 | INFO     | . initial setup = 2 s
[2025-12-14 14:00:04] 2025-12-14 18:59:08,046 | INFO     | . payload setup = 6 s
[2025-12-14 14:00:04] 2025-12-14 18:59:08,046 | INFO     | . stage-in = 0 s
[2025-12-14 14:00:04] 2025-12-14 18:59:08,047 | INFO     | . payload execution = 5624 s
[2025-12-14 14:00:04] 2025-12-14 18:59:08,047 | INFO     | . stage-out = 0 s
[2025-12-14 14:00:04] 2025-12-14 18:59:08,047 | INFO     | . log creation = 0 s
[2025-12-14 14:00:04] 2025-12-14 18:59:08,047 | INFO     | ..............................
[2025-12-14 14:00:04] 2025-12-14 18:59:08,064 | INFO     | sufficient remaining disk space (18520997888 B)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,069 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,124 | INFO     | 
[2025-12-14 14:00:04] 2025-12-14 18:59:08,124 | INFO     | job summary report
[2025-12-14 14:00:04] 2025-12-14 18:59:08,124 | INFO     | --------------------------------------------------
[2025-12-14 14:00:04] 2025-12-14 18:59:08,124 | INFO     | PanDA job id: 6929435501
[2025-12-14 14:00:04] 2025-12-14 18:59:08,125 | INFO     | time since job start (5659s) is within the limit (174528.0s)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,125 | INFO     | task id: 47898763
[2025-12-14 14:00:04] 2025-12-14 18:59:08,125 | INFO     | errors: (none)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,125 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 14:00:04] 2025-12-14 18:59:08,125 | INFO     | pilot state: finished 
[2025-12-14 14:00:04] 2025-12-14 18:59:08,125 | INFO     | transexitcode: 0
[2025-12-14 14:00:04] 2025-12-14 18:59:08,126 | INFO     | exeerrorcode: 0
[2025-12-14 14:00:04] 2025-12-14 18:59:08,126 | INFO     | exeerrordiag: 
[2025-12-14 14:00:04] 2025-12-14 18:59:08,126 | INFO     | exitcode: 0
[2025-12-14 14:00:04] 2025-12-14 18:59:08,126 | INFO     | exitmsg: OK
[2025-12-14 14:00:04] 2025-12-14 18:59:08,126 | INFO     | cpuconsumptiontime: 61491 s
[2025-12-14 14:00:04] 2025-12-14 18:59:08,126 | INFO     | nevents: 400
[2025-12-14 14:00:04] 2025-12-14 18:59:08,126 | INFO     | neventsw: 0
[2025-12-14 14:00:04] 2025-12-14 18:59:08,127 | INFO     | pid: 30226
[2025-12-14 14:00:04] 2025-12-14 18:59:08,127 | INFO     | pgrp: 30226
[2025-12-14 14:00:04] 2025-12-14 18:59:08,127 | INFO     | corecount: 12
[2025-12-14 14:00:04] 2025-12-14 18:59:08,127 | INFO     | event service: False
[2025-12-14 14:00:04] 2025-12-14 18:59:08,127 | INFO     | sizes: {0: 2283725, 1: 2283980, 6: 2284242, 12: 2284270, 5635: 2310879, 5636: 2319877, 5638: 2320061, 5642: 2320255}
[2025-12-14 14:00:04] 2025-12-14 18:59:08,127 | INFO     | --------------------------------------------------
[2025-12-14 14:00:04] 2025-12-14 18:59:08,127 | INFO     | 
[2025-12-14 14:00:04] 2025-12-14 18:59:08,127 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 14:00:04] 2025-12-14 18:59:08,130 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6929435501: 4622964 B (within 2768240640 B limit)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,131 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6929435501/HITS.47898763._007917.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,131 | INFO     | total size of present files: 0 B (workdir size: 4622964 B)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,131 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6929435501/HITS.47898763._007917.pool.root.1 since it does not exist
[2025-12-14 14:00:04] 2025-12-14 18:59:08,151 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,151 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,151 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,152 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,152 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,152 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,152 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,152 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,152 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,153 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,153 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,153 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,153 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,153 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,153 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,154 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,154 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,154 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,154 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,154 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 14:00:04] 2025-12-14 18:59:08,155 | INFO     | job 6929435501 has completed (purged errors)
[2025-12-14 14:00:04] 2025-12-14 18:59:08,155 | INFO     | overall cleanup function is called
[2025-12-14 14:00:04] 2025-12-14 18:59:08,223 | INFO     | number of running child processes to parent process 30226: 1
[2025-12-14 14:00:04] 2025-12-14 18:59:08,223 | INFO     | maximum number of monitored processes: 6
[2025-12-14 14:00:04] 2025-12-14 18:59:08,224 | INFO     | aborting job monitoring since job object (job id=6929435501) has expired
[2025-12-14 14:00:04] 2025-12-14 18:59:09,158 | INFO     | --- collectZombieJob: --- 10, [30226]
[2025-12-14 14:00:04] 2025-12-14 18:59:09,158 | INFO     | zombie collector waiting for pid 30226
[2025-12-14 14:00:04] 2025-12-14 18:59:09,158 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 14:00:04] 2025-12-14 18:59:09,158 | INFO     | collected zombie processes
[2025-12-14 14:00:04] 2025-12-14 18:59:09,158 | INFO     | will attempt to kill all subprocesses of pid=30226
[2025-12-14 14:00:04] 2025-12-14 18:59:09,247 | INFO     | process IDs to be killed: [30226] (in reverse order)
[2025-12-14 14:00:04] 2025-12-14 18:59:09,296 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 14:00:04] 2025-12-14 18:59:09,297 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 14:00:04] 2025-12-14 18:59:09,300 | INFO     | did not find any defunct processes belonging to 30226
[2025-12-14 14:00:04] 2025-12-14 18:59:09,302 | INFO     | did not find any defunct processes belonging to 30226
[2025-12-14 14:00:04] 2025-12-14 18:59:09,302 | INFO     | ready for new job
[2025-12-14 14:00:04] 2025-12-14 18:59:09,302 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 14:00:04] 2025-12-14 18:59:09,303 | INFO     | ***************************************
[2025-12-14 14:00:04] 2025-12-14 18:59:09,303 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 14:00:04] 2025-12-14 18:59:09,303 | INFO     | ***************************************
[2025-12-14 14:00:04] 2025-12-14 18:59:09,303 | INFO     | 
[2025-12-14 14:00:04] 2025-12-14 18:59:09,304 | INFO     | architecture information:
[2025-12-14 14:00:04] 2025-12-14 18:59:09,304 | INFO     | executing command: cat /etc/os-release
[2025-12-14 14:00:04] 2025-12-14 18:59:09,320 | INFO     | cat /etc/os-release:
[2025-12-14 14:00:04] NAME="CentOS Linux"
[2025-12-14 14:00:04] VERSION="7 (Core)"
[2025-12-14 14:00:04] ID="centos"
[2025-12-14 14:00:04] ID_LIKE="rhel fedora"
[2025-12-14 14:00:04] VERSION_ID="7"
[2025-12-14 14:00:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 14:00:04] ANSI_COLOR="0;31"
[2025-12-14 14:00:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 14:00:04] HOME_URL="https://www.centos.org/"
[2025-12-14 14:00:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 14:00:04] 
[2025-12-14 14:00:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 14:00:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 14:00:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 14:00:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 14:00:04] 
[2025-12-14 14:00:04] 2025-12-14 18:59:09,321 | INFO     | ***************************************
[2025-12-14 14:00:04] 2025-12-14 18:59:09,824 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 14:00:04] 2025-12-14 18:59:09,840 | INFO     | sufficient remaining disk space (18526240768 B)
[2025-12-14 14:00:04] 2025-12-14 18:59:09,841 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 14:00:04] 2025-12-14 18:59:09,841 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 14:00:04] 2025-12-14 18:59:09,841 | INFO     | update_server=False
[2025-12-14 14:00:04] 2025-12-14 18:59:09,841 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 14:00:04] 2025-12-14 18:59:09,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 14:00:04] 2025-12-14 18:59:09,842 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-14 14:00:04] 2025-12-14 18:59:09,842 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 14:00:04] 2025-12-14 18:59:09,842 | INFO     | aborting loop
[2025-12-14 14:00:04] 2025-12-14 18:59:09,843 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 14:00:04] 2025-12-14 18:59:09,843 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 14:00:04] 2025-12-14 18:59:09,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 14:00:04] 2025-12-14 18:59:09,844 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 14:00:04] 2025-12-14 18:59:09,868 | INFO     | all job control threads have been joined
[2025-12-14 14:00:04] 2025-12-14 18:59:10,078 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 14:00:04] 2025-12-14 18:59:10,747 | INFO     | all payload control threads have been joined
[2025-12-14 14:00:04] 2025-12-14 18:59:10,847 | INFO     | [job] retrieve thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:10,849 | INFO     | [job] queue monitor thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:10,849 | INFO     | [job] job monitor thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:10,864 | INFO     | all data control threads have been joined
[2025-12-14 14:00:04] 2025-12-14 18:59:10,870 | INFO     | [job] control thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:11,002 | INFO     | [data] copytool_in thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:11,005 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:11,174 | INFO     | [payload] validate_post thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:11,233 | INFO     | [payload] failed_post thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:11,751 | INFO     | [payload] control thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:11,869 | INFO     | [data] control thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:11,949 | INFO     | [job] validate thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:11,967 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:11,999 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:12,084 | INFO     | [data] copytool_out thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:12,154 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:13,849 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 14:00:04] 2025-12-14 18:59:58,564 | INFO     | [monitor] cgroup control has ended
[2025-12-14 14:00:04] 2025-12-14 18:59:59,570 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139765072344896)>', '<ExcThread(monitor, started 139764401432320)>']
[2025-12-14 14:00:04] 2025-12-14 19:00:00,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 14:00:04] 2025-12-14 19:00:00,090 | INFO     | [monitor] control thread has ended
[2025-12-14 14:00:04] 2025-12-14 19:00:04,599 | INFO     | all workflow threads have been joined
[2025-12-14 14:00:04] 2025-12-14 19:00:04,600 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 14:00:04] 2025-12-14 19:00:04,601 | INFO     | traces error code: 0
[2025-12-14 14:00:04] 2025-12-14 19:00:04,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 14:00:04] 2025-12-14 19:00:04,703 [wrapper] ==== pilot stdout END ====
[2025-12-14 14:00:04] 2025-12-14 19:00:04,706 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 14:00:04] 2025-12-14 19:00:04,710 [wrapper] pilotpid: 23727
[2025-12-14 14:00:04] 2025-12-14 19:00:04,713 [wrapper] Pilot exit status: 0
[2025-12-14 14:00:04] 2025-12-14 19:00:04,728 [wrapper] pandaids: 6929435501
[2025-12-14 14:00:04] 2025-12-14 19:00:04,773 [wrapper] cleanup supervisor_pilot  7554 23728
[2025-12-14 14:00:04] 2025-12-14 19:00:04,777 [wrapper] Test setup, not cleaning
[2025-12-14 14:00:04] 2025-12-14 19:00:04,781 [wrapper] apfmon messages muted
[2025-12-14 14:00:04] 2025-12-14 19:00:04,786 [wrapper] ==== wrapper stdout END ====
[2025-12-14 14:00:04] 2025-12-14 19:00:04,789 [wrapper] ==== wrapper stderr END ====
[2025-12-14 14:00:04]  *** Error codes and diagnostics ***
[2025-12-14 14:00:04]     "exeErrorCode": 0,
[2025-12-14 14:00:04]     "exeErrorDiag": "",
[2025-12-14 14:00:04]     "pilotErrorCode": 0,
[2025-12-14 14:00:04]     "pilotErrorDiag": "",
[2025-12-14 14:00:04]  *** Listing of results directory ***
[2025-12-14 14:00:04] total 449512
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 23:46 pilot3.tar.gz
[2025-12-14 14:00:04] -rwx------ 1 boincer umatlas     36322 Dec 13 23:47 runpilot2-wrapper.sh
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 23:48 queuedata.json
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas       100 Dec 14 12:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 14:00:04] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 12:24 run_atlas
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas       105 Dec 14 12:24 job.xml
[2025-12-14 14:00:04] -rw-r--r-- 2 boincer umatlas 225400057 Dec 14 12:24 EVNT.47898761._000317.pool.root.1
[2025-12-14 14:00:04] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 12:24 start_atlas.sh
[2025-12-14 14:00:04] drwxrwx--x 2 boincer umatlas      4096 Dec 14 12:24 shared
[2025-12-14 14:00:04] -rw-r--r-- 2 boincer umatlas    592401 Dec 14 12:24 input.tar.gz
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas         0 Dec 14 12:24 boinc_lockfile
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas      2504 Dec 14 12:24 pandaJob.out
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas        57 Dec 14 12:24 setup.sh.local
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas    991024 Dec 14 12:24 agis_schedconf.cvmfs.json
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas   1516240 Dec 14 12:24 agis_ddmendpoints.agis.ALL.json
[2025-12-14 14:00:04] drwx------ 5 boincer umatlas      4096 Dec 14 12:24 pilot3
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas 228549481 Dec 14 13:58 HITS.47898763._007917.pool.root.1
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas      5953 Dec 14 13:58 init_data.xml
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas       529 Dec 14 13:58 boinc_task_state.xml
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas      1060 Dec 14 13:58 memory_monitor_summary.json
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas    405357 Dec 14 13:59 log.47898763._007917.job.log.tgz.1
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas        95 Dec 14 13:59 pilot_heartbeat.json
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas      7851 Dec 14 13:59 heartbeat.json
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas        27 Dec 14 13:59 wrapper_checkpoint.txt
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 13:59 boinc_mmap_file
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas      4552 Dec 14 14:00 pilotlog.txt
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas    809943 Dec 14 14:00 log.47898763._007917.job.log.1
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas       357 Dec 14 14:00 output.list
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas       620 Dec 14 14:00 runtime_log
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas   1239040 Dec 14 14:00 result.tar.gz
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas       659 Dec 14 14:00 xrOKDmMCto8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGrUKDmFEdbTo.diag
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas      9344 Dec 14 14:00 runtime_log.err
[2025-12-14 14:00:04] -rw-r--r-- 1 boincer umatlas     22632 Dec 14 14:00 stderr.txt
[2025-12-14 14:00:04] HITS file was successfully produced:
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas 228549481 Dec 14 13:58 shared/HITS.pool.root.1
[2025-12-14 14:00:04]  *** Contents of shared directory: ***
[2025-12-14 14:00:04] total 445128
[2025-12-14 14:00:04] -rw-r--r-- 2 boincer umatlas 225400057 Dec 14 12:24 ATLAS.root_0
[2025-12-14 14:00:04] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 12:24 start_atlas.sh
[2025-12-14 14:00:04] -rw-r--r-- 2 boincer umatlas    592401 Dec 14 12:24 input.tar.gz
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas 228549481 Dec 14 13:58 HITS.pool.root.1
[2025-12-14 14:00:04] -rw------- 1 boincer umatlas   1239040 Dec 14 14:00 result.tar.gz
14:00:06 (19320): run_atlas exited; CPU time 61439.484715
14:00:06 (19320): called boinc_finish(0)

</stderr_txt>
]]>

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