Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:46:20 (14425): wrapper (7.7.26015): starting
23:46:20 (14425): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 23:46:20] Arguments: --nthreads 8
[2025-12-14 23:46:20] Threads: 8
[2025-12-14 23:46:20] Checking for CVMFS
[2025-12-14 23:46:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 23:46:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 23:46:20] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 23:46:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 23:46:21] 2.11.2.0 28366 198713 140724 154010 1 274 21111826 25165824 3679 130560 12 65878925 99.874 36728482 2168 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-14 23:46:21] CVMFS is ok
[2025-12-14 23:46:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 23:46:21] Checking for apptainer binary...
[2025-12-14 23:46:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 23:46:21] Running /usr/bin/apptainer --version
[2025-12-14 23:46:21] apptainer version 1.3.2-1.el7
[2025-12-14 23:46:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 23:46:22] cg-vwn288.simple-grid.lan
[2025-12-14 23:46:22] apptainer works
[2025-12-14 23:46:22] Set ATHENA_PROC_NUMBER=8
[2025-12-14 23:46:22] Set ATHENA_CORE_NUMBER=8
[2025-12-14 23:46:22] Starting ATLAS job with PandaID=6929435484
[2025-12-14 23:46:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 05:30:44]  *** The last 200 lines of the pilot log: ***
[2025-12-15 05:30:44] 2025-12-15 04:29:34,466 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-15 05:30:44] 2025-12-15 04:29:34,467 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-15 05:30:44] 2025-12-15 04:29:34,469 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6929435484/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 05:30:44] 2025-12-15 04:29:34,469 | INFO     | extracted standard info from prmon json
[2025-12-15 05:30:44] 2025-12-15 04:29:34,469 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 05:30:44] 2025-12-15 04:29:34,470 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 05:30:44] 2025-12-15 04:29:34,470 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 05:30:44] 2025-12-15 04:29:34,470 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 05:30:44] 2025-12-15 04:29:34,484 | INFO     | fitting pss+swap vs Time
[2025-12-15 05:30:44] 2025-12-15 04:29:34,485 | INFO     | sum of square deviations: 11553509647.5
[2025-12-15 05:30:44] 2025-12-15 04:29:34,490 | INFO     | sum of deviations: 23126239053.0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,490 | INFO     | mean x: 1765762655.5
[2025-12-15 05:30:44] 2025-12-15 04:29:34,490 | INFO     | mean y: 2486835.401197605
[2025-12-15 05:30:44] 2025-12-15 04:29:34,490 | INFO     | intersect: -3531975897.3831425
[2025-12-15 05:30:44] 2025-12-15 04:29:34,491 | INFO     | chi2: 2.293484999543331
[2025-12-15 05:30:44] 2025-12-15 04:29:34,491 | INFO     | sum of square deviations: 11042365180.0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,495 | INFO     | sum of deviations: 44943380896.00001
[2025-12-15 05:30:44] 2025-12-15 04:29:34,495 | INFO     | mean x: 1765762503.0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,495 | INFO     | mean y: 2493264.1550151976
[2025-12-15 05:30:44] 2025-12-15 04:29:34,495 | INFO     | intersect: -7184312773.372115
[2025-12-15 05:30:44] 2025-12-15 04:29:34,496 | INFO     | chi2: 1.5153583966503887
[2025-12-15 05:30:44] 2025-12-15 04:29:34,496 | INFO     | current chi2=1.5153583966503887 (change=33.92769532165589 %)
[2025-12-15 05:30:44] 2025-12-15 04:29:34,506 | INFO     | sum of square deviations: 10546523325.0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,509 | INFO     | sum of deviations: 44209145642.49999
[2025-12-15 05:30:44] 2025-12-15 04:29:34,510 | INFO     | mean x: 1765762350.5
[2025-12-15 05:30:44] 2025-12-15 04:29:34,510 | INFO     | mean y: 2493038.3364197533
[2025-12-15 05:30:44] 2025-12-15 04:29:34,510 | INFO     | intersect: -7399267951.30209
[2025-12-15 05:30:44] 2025-12-15 04:29:34,510 | INFO     | chi2: 1.5157481285837993
[2025-12-15 05:30:44] 2025-12-15 04:29:34,511 | INFO     | current chi2=1.5157481285837993 (change=-0.02571879591468259 %)
[2025-12-15 05:30:44] 2025-12-15 04:29:34,511 | INFO     | right removable region: 323
[2025-12-15 05:30:44] 2025-12-15 04:29:34,511 | INFO     | sum of square deviations: 11042365180.0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,515 | INFO     | sum of deviations: -27477795321.00002
[2025-12-15 05:30:44] 2025-12-15 04:29:34,515 | INFO     | mean x: 1765762808.0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,515 | INFO     | mean y: 2501831.151975684
[2025-12-15 05:30:44] 2025-12-15 04:29:34,515 | INFO     | intersect: 4396421814.12235
[2025-12-15 05:30:44] 2025-12-15 04:29:34,516 | INFO     | chi2: 0.8855562094079941
[2025-12-15 05:30:44] 2025-12-15 04:29:34,516 | INFO     | current chi2=0.8855562094079941 (change=61.388183939100436 %)
[2025-12-15 05:30:44] 2025-12-15 04:29:34,516 | INFO     | sum of square deviations: 10546523325.0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,520 | INFO     | sum of deviations: -29055251599.999992
[2025-12-15 05:30:44] 2025-12-15 04:29:34,520 | INFO     | mean x: 1765762960.5
[2025-12-15 05:30:44] 2025-12-15 04:29:34,520 | INFO     | mean y: 2502305.9320987654
[2025-12-15 05:30:44] 2025-12-15 04:29:34,520 | INFO     | intersect: 4867108916.308921
[2025-12-15 05:30:44] 2025-12-15 04:29:34,521 | INFO     | chi2: 0.8744136369816708
[2025-12-15 05:30:44] 2025-12-15 04:29:34,521 | INFO     | current chi2=0.8744136369816708 (change=1.2582569359173905 %)
[2025-12-15 05:30:44] 2025-12-15 04:29:34,521 | INFO     | left removable region: 20
[2025-12-15 05:30:44] 2025-12-15 04:29:34,530 | INFO     | sum of square deviations: 8625843592.0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,539 | INFO     | sum of deviations: 13733107387.999996
[2025-12-15 05:30:44] 2025-12-15 04:29:34,540 | INFO     | mean x: 1765762930.0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,540 | INFO     | mean y: 2502064.7359735975
[2025-12-15 05:30:44] 2025-12-15 04:29:34,540 | INFO     | intersect: -2808748995.0362587
[2025-12-15 05:30:44] 2025-12-15 04:29:34,541 | INFO     | chi2: 0.0035255318721809925
[2025-12-15 05:30:44] 2025-12-15 04:29:34,541 | INFO     | current memory leak: 1.59 B/s (using 303 data points, chi2=0.00)
[2025-12-15 05:30:44] 2025-12-15 04:29:34,541 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2025-12-15 05:30:44] 2025-12-15 04:29:34,542 | INFO     | ..............................
[2025-12-15 05:30:44] 2025-12-15 04:29:34,542 | INFO     | . Timing measurements:
[2025-12-15 05:30:44] 2025-12-15 04:29:34,542 | INFO     | . get job = 0 s
[2025-12-15 05:30:44] 2025-12-15 04:29:34,542 | INFO     | . initial setup = 2 s
[2025-12-15 05:30:44] 2025-12-15 04:29:34,542 | INFO     | . payload setup = 20 s
[2025-12-15 05:30:44] 2025-12-15 04:29:34,542 | INFO     | . stage-in = 0 s
[2025-12-15 05:30:44] 2025-12-15 04:29:34,542 | INFO     | . payload execution = 20406 s
[2025-12-15 05:30:44] 2025-12-15 04:29:34,542 | INFO     | . stage-out = 3 s
[2025-12-15 05:30:44] 2025-12-15 04:29:34,542 | INFO     | . log creation = 1 s
[2025-12-15 05:30:44] 2025-12-15 04:29:34,542 | INFO     | ..............................
[2025-12-15 05:30:44] 2025-12-15 04:29:34,674 | INFO     | 
[2025-12-15 05:30:44] 2025-12-15 04:29:34,675 | INFO     | job summary report
[2025-12-15 05:30:44] 2025-12-15 04:29:34,675 | INFO     | --------------------------------------------------
[2025-12-15 05:30:44] 2025-12-15 04:29:34,675 | INFO     | PanDA job id: 6929435484
[2025-12-15 05:30:44] 2025-12-15 04:29:34,675 | INFO     | task id: 47898763
[2025-12-15 05:30:44] 2025-12-15 04:29:34,675 | INFO     | errors: (none)
[2025-12-15 05:30:44] 2025-12-15 04:29:34,675 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 05:30:44] 2025-12-15 04:29:34,675 | INFO     | pilot state: finished 
[2025-12-15 05:30:44] 2025-12-15 04:29:34,675 | INFO     | transexitcode: 0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,675 | INFO     | exeerrorcode: 0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,676 | INFO     | exeerrordiag: 
[2025-12-15 05:30:44] 2025-12-15 04:29:34,676 | INFO     | exitcode: 0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,676 | INFO     | exitmsg: OK
[2025-12-15 05:30:44] 2025-12-15 04:29:34,676 | INFO     | cpuconsumptiontime: 80528 s
[2025-12-15 05:30:44] 2025-12-15 04:29:34,676 | INFO     | nevents: 400
[2025-12-15 05:30:44] 2025-12-15 04:29:34,676 | INFO     | neventsw: 0
[2025-12-15 05:30:44] 2025-12-15 04:29:34,676 | INFO     | pid: 26845
[2025-12-15 05:30:44] 2025-12-15 04:29:34,676 | INFO     | pgrp: 26845
[2025-12-15 05:30:44] 2025-12-15 04:29:34,676 | INFO     | corecount: 8
[2025-12-15 05:30:44] 2025-12-15 04:29:34,676 | INFO     | event service: False
[2025-12-15 05:30:44] 2025-12-15 04:29:34,676 | INFO     | sizes: {0: 2283952, 1: 2283952, 10: 2284242, 12: 2284270, 20431: 2317230, 20434: 2326412, 20539: 2326550}
[2025-12-15 05:30:44] 2025-12-15 04:29:34,677 | INFO     | --------------------------------------------------
[2025-12-15 05:30:44] 2025-12-15 04:29:34,677 | INFO     | 
[2025-12-15 05:30:44] 2025-12-15 04:29:34,677 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-15 05:30:44] 2025-12-15 04:29:35,107 | INFO     | time since job start (20558s) is within the limit (174528.0s)
[2025-12-15 05:30:44] 2025-12-15 04:29:35,122 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,122 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,122 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,122 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,122 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,122 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,123 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,123 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,123 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,123 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,123 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,123 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,123 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,123 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,124 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,124 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,124 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 05:30:44] 2025-12-15 04:29:35,124 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,124 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 05:30:44] 2025-12-15 04:29:35,124 | INFO     | job 6929435484 has completed (purged errors)
[2025-12-15 05:30:44] 2025-12-15 04:29:35,124 | INFO     | overall cleanup function is called
[2025-12-15 05:30:44] 2025-12-15 04:29:36,132 | INFO     | --- collectZombieJob: --- 10, [26845]
[2025-12-15 05:30:44] 2025-12-15 04:29:36,133 | INFO     | zombie collector waiting for pid 26845
[2025-12-15 05:30:44] 2025-12-15 04:29:36,133 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 05:30:44] 2025-12-15 04:29:36,133 | INFO     | collected zombie processes
[2025-12-15 05:30:44] 2025-12-15 04:29:36,133 | INFO     | will attempt to kill all subprocesses of pid=26845
[2025-12-15 05:30:44] 2025-12-15 04:29:36,317 | INFO     | process IDs to be killed: [26845] (in reverse order)
[2025-12-15 05:30:44] 2025-12-15 04:29:37,243 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 05:30:44] 2025-12-15 04:29:37,244 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 05:30:44] 2025-12-15 04:29:37,247 | INFO     | did not find any defunct processes belonging to 26845
[2025-12-15 05:30:44] 2025-12-15 04:29:37,250 | INFO     | did not find any defunct processes belonging to 26845
[2025-12-15 05:30:44] 2025-12-15 04:29:37,250 | INFO     | ready for new job
[2025-12-15 05:30:44] 2025-12-15 04:29:37,251 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 05:30:44] 2025-12-15 04:29:37,253 | INFO     | ***************************************
[2025-12-15 05:30:44] 2025-12-15 04:29:37,253 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 05:30:44] 2025-12-15 04:29:37,253 | INFO     | ***************************************
[2025-12-15 05:30:44] 2025-12-15 04:29:37,253 | INFO     | 
[2025-12-15 05:30:44] 2025-12-15 04:29:37,254 | INFO     | pilot is running in a VM
[2025-12-15 05:30:44] 2025-12-15 04:29:37,254 | INFO     | architecture information:
[2025-12-15 05:30:44] 2025-12-15 04:29:37,255 | INFO     | executing command: cat /etc/os-release
[2025-12-15 05:30:44] 2025-12-15 04:29:37,397 | INFO     | cat /etc/os-release:
[2025-12-15 05:30:44] NAME="CentOS Linux"
[2025-12-15 05:30:44] VERSION="7 (Core)"
[2025-12-15 05:30:44] ID="centos"
[2025-12-15 05:30:44] ID_LIKE="rhel fedora"
[2025-12-15 05:30:44] VERSION_ID="7"
[2025-12-15 05:30:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 05:30:44] ANSI_COLOR="0;31"
[2025-12-15 05:30:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 05:30:44] HOME_URL="https://www.centos.org/"
[2025-12-15 05:30:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 05:30:44] 
[2025-12-15 05:30:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 05:30:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 05:30:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 05:30:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 05:30:44] 
[2025-12-15 05:30:44] 2025-12-15 04:29:37,397 | INFO     | ***************************************
[2025-12-15 05:30:44] 2025-12-15 04:29:37,901 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-15 05:30:44] 2025-12-15 04:29:38,176 | INFO     | sufficient remaining disk space (488105836544 B)
[2025-12-15 05:30:44] 2025-12-15 04:29:38,177 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 05:30:44] 2025-12-15 04:29:38,177 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 05:30:44] 2025-12-15 04:29:38,177 | INFO     | update_server=False
[2025-12-15 05:30:44] 2025-12-15 04:29:38,177 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 05:30:44] 2025-12-15 04:29:38,177 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 05:30:44] 2025-12-15 04:29:38,178 | INFO     | aborting loop
[2025-12-15 05:30:44] 2025-12-15 04:29:38,206 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 05:30:44] 2025-12-15 04:29:38,703 | INFO     | all payload control threads have been joined
[2025-12-15 05:30:44] 2025-12-15 04:29:38,992 | INFO     | all data control threads have been joined
[2025-12-15 05:30:44] 2025-12-15 04:29:39,183 | INFO     | [job] retrieve thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:39,184 | INFO     | [job] job monitor thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:39,215 | INFO     | all job control threads have been joined
[2025-12-15 05:30:44] 2025-12-15 04:29:39,340 | INFO     | [job] validate thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:39,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 05:30:44] 2025-12-15 04:29:39,709 | INFO     | [payload] control thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:39,736 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:39,789 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:39,811 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 05:30:44] 2025-12-15 04:29:39,833 | INFO     | [data] copytool_in thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:39,998 | INFO     | [data] control thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:40,062 | INFO     | [payload] failed_post thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:40,214 | INFO     | [data] copytool_out thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:40,222 | INFO     | [job] control thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:40,243 | INFO     | [payload] validate_post thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:40,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:40,632 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:40,701 | INFO     | [job] queue monitor thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:29:43,821 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 05:30:44] 2025-12-15 04:30:08,299 | INFO     | PID=18222 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-15 05:30:44] 2025-12-15 04:30:08,300 | INFO     | .. there are 9 such processes running
[2025-12-15 05:30:44] 2025-12-15 04:30:08,301 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 05:30:44] 2025-12-15 04:30:08,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 05:30:44] 2025-12-15 04:30:08,301 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 05:30:44] 2025-12-15 04:30:32,459 | INFO     | [monitor] cgroup control has ended
[2025-12-15 05:30:44] 2025-12-15 04:30:34,054 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139627352856384)>', '<ExcThread(monitor, started 139626694043392)>']
[2025-12-15 05:30:44] 2025-12-15 04:30:34,455 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 05:30:44] 2025-12-15 04:30:34,456 | INFO     | [monitor] control thread has ended
[2025-12-15 05:30:44] 2025-12-15 04:30:39,079 | INFO     | all workflow threads have been joined
[2025-12-15 05:30:44] 2025-12-15 04:30:39,080 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 05:30:44] 2025-12-15 04:30:39,080 | INFO     | traces error code: 0
[2025-12-15 05:30:44] 2025-12-15 04:30:39,080 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 05:30:44] 2025-12-15 04:30:39,426 [wrapper] ==== pilot stdout END ====
[2025-12-15 05:30:44] 2025-12-15 04:30:39,522 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 05:30:44] 2025-12-15 04:30:39,619 [wrapper] pilotpid: 18222
[2025-12-15 05:30:44] 2025-12-15 04:30:39,666 [wrapper] Pilot exit status: 0
[2025-12-15 05:30:44] 2025-12-15 04:30:40,173 [wrapper] pandaids: 6929435484
[2025-12-15 05:30:44] 2025-12-15 04:30:41,191 [wrapper] cleanup supervisor_pilot 25106 18223
[2025-12-15 05:30:44] 2025-12-15 04:30:41,266 [wrapper] Test setup, not cleaning
[2025-12-15 05:30:44] 2025-12-15 04:30:41,375 [wrapper] apfmon messages muted
[2025-12-15 05:30:44] 2025-12-15 04:30:41,479 [wrapper] ==== wrapper stdout END ====
[2025-12-15 05:30:44] 2025-12-15 04:30:41,581 [wrapper] ==== wrapper stderr END ====
[2025-12-15 05:30:44]  *** Error codes and diagnostics ***
[2025-12-15 05:30:44]     "exeErrorCode": 0,
[2025-12-15 05:30:44]     "exeErrorDiag": "",
[2025-12-15 05:30:44]     "pilotErrorCode": 0,
[2025-12-15 05:30:44]     "pilotErrorDiag": "",
[2025-12-15 05:30:44]  *** Listing of results directory ***
[2025-12-15 05:30:44] total 442828
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc    579449 Dec 14 05:46 pilot3.tar.gz
[2025-12-15 05:30:44] -rwx------. 1 boinc boinc     36322 Dec 14 05:47 runpilot2-wrapper.sh
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc      5112 Dec 14 05:48 queuedata.json
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc       100 Dec 14 23:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 05:30:44] -rwxr-xr-x. 1 boinc boinc      7986 Dec 14 23:46 run_atlas
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc       105 Dec 14 23:46 job.xml
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc      6392 Dec 14 23:46 init_data.xml
[2025-12-15 05:30:44] -rw-r--r--. 2 boinc boinc 224143634 Dec 14 23:46 EVNT.47898761._000316.pool.root.1
[2025-12-15 05:30:44] -rw-r--r--. 2 boinc boinc     15847 Dec 14 23:46 start_atlas.sh
[2025-12-15 05:30:44] drwxrwx--x. 2 boinc boinc        68 Dec 14 23:46 shared
[2025-12-15 05:30:44] -rw-r--r--. 2 boinc boinc    592399 Dec 14 23:46 input.tar.gz
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc         0 Dec 14 23:46 boinc_lockfile
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc      2504 Dec 14 23:46 pandaJob.out
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc    991024 Dec 14 23:46 agis_schedconf.cvmfs.json
[2025-12-15 05:30:44] drwx------. 5 boinc boinc      4096 Dec 14 23:46 pilot3
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc 218778864 Dec 15 05:26 HITS.47898763._007900.pool.root.1
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc       531 Dec 15 05:26 boinc_task_state.xml
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc      1022 Dec 15 05:27 memory_monitor_summary.json
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc   1516240 Dec 15 05:27 agis_ddmendpoints.agis.ALL.json
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc    556384 Dec 15 05:27 log.47898763._007900.job.log.tgz.1
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc      7778 Dec 15 05:29 heartbeat.json
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc        95 Dec 15 05:30 pilot_heartbeat.json
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc      8192 Dec 15 05:30 boinc_mmap_file
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc        28 Dec 15 05:30 wrapper_checkpoint.txt
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc      4884 Dec 15 05:30 pilotlog.txt
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc   2763433 Dec 15 05:30 log.47898763._007900.job.log.1
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc       357 Dec 15 05:30 output.list
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc       620 Dec 15 05:30 runtime_log
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc   3338240 Dec 15 05:30 result.tar.gz
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc      8817 Dec 15 05:30 runtime_log.err
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc       658 Dec 15 05:30 QHtKDmDCto8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQfQKDm67NSAn.diag
[2025-12-15 05:30:44] -rw-r--r--. 1 boinc boinc     20734 Dec 15 05:30 stderr.txt
[2025-12-15 05:30:44] HITS file was successfully produced:
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc 218778864 Dec 15 05:26 shared/HITS.pool.root.1
[2025-12-15 05:30:44]  *** Contents of shared directory: ***
[2025-12-15 05:30:44] total 436400
[2025-12-15 05:30:44] -rw-r--r--. 2 boinc boinc 224143634 Dec 14 23:46 ATLAS.root_0
[2025-12-15 05:30:44] -rw-r--r--. 2 boinc boinc     15847 Dec 14 23:46 start_atlas.sh
[2025-12-15 05:30:44] -rw-r--r--. 2 boinc boinc    592399 Dec 14 23:46 input.tar.gz
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc 218778864 Dec 15 05:26 HITS.pool.root.1
[2025-12-15 05:30:44] -rw-------. 1 boinc boinc   3338240 Dec 15 05:30 result.tar.gz
05:30:45 (14425): run_atlas exited; CPU time 80806.640704
05:30:45 (14425): called boinc_finish(0)

</stderr_txt>
]]>

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