Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:14:39 (4474): wrapper (7.7.26015): starting
11:14:39 (4474): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 11:14:39] Arguments: --nthreads 12
[2025-12-14 11:14:39] Threads: 12
[2025-12-14 11:14:39] Checking for CVMFS
[2025-12-14 11:14:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 11:14:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 11:14:39] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 11:14:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 11:14:40] 2.11.2.0 3103 103803 96772 154001 3 1 17265205 20275201 1 130560 0 45412287 99.930 5442272 33069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 11:14:40] CVMFS is ok
[2025-12-14 11:14:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 11:14:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 11:14:40] Further information can be found at the LHC@home message board.
[2025-12-14 11:14:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 11:14:40] Checking for apptainer binary...
[2025-12-14 11:14:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 11:14:40] Running /usr/bin/apptainer --version
[2025-12-14 11:14:40] apptainer version 1.3.2-1.el7
[2025-12-14 11:14:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 11:14:41] c-115-41.aglt2.org
[2025-12-14 11:14:41] apptainer works
[2025-12-14 11:14:41] Set ATHENA_PROC_NUMBER=12
[2025-12-14 11:14:41] Set ATHENA_CORE_NUMBER=12
[2025-12-14 11:14:41] Starting ATLAS job with PandaID=6929448996
[2025-12-14 11:14:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 12:24:08]  *** The last 200 lines of the pilot log: ***
[2025-12-14 12:24:08]  is_tar=False
[2025-12-14 12:24:08]  lfn=log.47886933._002875.job.log.tgz.1
[2025-12-14 12:24:08]  mtime=0
[2025-12-14 12:24:08]  protocol_id=None
[2025-12-14 12:24:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 12:24:08]  replicas=None
[2025-12-14 12:24:08]  scope=mc23_13p6TeV
[2025-12-14 12:24:08]  status=None
[2025-12-14 12:24:08]  status_code=0
[2025-12-14 12:24:08]  storage_token=
[2025-12-14 12:24:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929448996/log.47886933._002875.job.log.tgz.1
[2025-12-14 12:24:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/39/log.47886933._002875.job.log.tgz.1
[2025-12-14 12:24:08]  workdir=None
[2025-12-14 12:24:08] ]
[2025-12-14 12:24:08] 2025-12-14 17:23:03,748 | INFO     | transferring file log.47886933._002875.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929448996/log.47886933._002875.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 12:24:08] 2025-12-14 17:23:03,748 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929448996/log.47886933._002875.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._002875.job
[2025-12-14 12:24:08] 2025-12-14 17:23:03,771 | INFO     | adding to output.list: log.47886933._002875.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/39/log.47886933._002875.job.log.tg
[2025-12-14 12:24:08] 2025-12-14 17:23:03,772 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 12:24:08] 2025-12-14 17:23:03,772 | INFO     | summary of transferred files:
[2025-12-14 12:24:08] 2025-12-14 17:23:03,772 | INFO     |  -- lfn=log.47886933._002875.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 12:24:08] 2025-12-14 17:23:03,773 | INFO     | stage-out finished correctly
[2025-12-14 12:24:08] 2025-12-14 17:23:04,209 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 12:24:08] 2025-12-14 17:23:04,889 | INFO     | time since job start (4088s) is within the limit (174528.0s)
[2025-12-14 12:24:08] 2025-12-14 17:23:05,740 | INFO     | job 6929448996 has state=finished
[2025-12-14 12:24:08] 2025-12-14 17:23:05,740 | INFO     | preparing for final server update for job 6929448996 in state='finished'
[2025-12-14 12:24:08] 2025-12-14 17:23:05,810 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-14 12:24:08] 2025-12-14 17:23:05,811 | INFO     | this job has now completed (state=finished)
[2025-12-14 12:24:08] 2025-12-14 17:23:05,811 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 12:24:08] 2025-12-14 17:23:05,811 | INFO     | log transfer has been attempted: DONE
[2025-12-14 12:24:08] 2025-12-14 17:23:05,811 | INFO     | job 6929448996 has finished - writing final server update
[2025-12-14 12:24:08] 2025-12-14 17:23:05,811 | INFO     | total number of processed events: 400 (read)
[2025-12-14 12:24:08] 2025-12-14 17:23:05,814 | INFO     | executing command: lscpu
[2025-12-14 12:24:08] 2025-12-14 17:23:05,843 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 12:24:08] 2025-12-14 17:23:05,954 | INFO     | monitor loop #306: job 0:6929448996 is in state 'finished'
[2025-12-14 12:24:08] 2025-12-14 17:23:05,954 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 12:24:08] 2025-12-14 17:23:06,895 | INFO     | time since job start (4090s) is within the limit (174528.0s)
[2025-12-14 12:24:08] 2025-12-14 17:23:08,457 | INFO     | monitor loop #307: job 0:6929448996 is in state 'finished'
[2025-12-14 12:24:08] 2025-12-14 17:23:08,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 12:24:08] 2025-12-14 17:23:08,900 | INFO     | time since job start (4092s) is within the limit (174528.0s)
[2025-12-14 12:24:08] 2025-12-14 17:23:10,618 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 12:24:08] 2025-12-14 17:23:10,623 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-12-14 12:24:08] 2025-12-14 17:23:10,625 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929448996/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 12:24:08] 2025-12-14 17:23:10,627 | INFO     | extracted standard info from prmon json
[2025-12-14 12:24:08] 2025-12-14 17:23:10,627 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 12:24:08] 2025-12-14 17:23:10,627 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 12:24:08] 2025-12-14 17:23:10,627 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 12:24:08] 2025-12-14 17:23:10,628 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 12:24:08] 2025-12-14 17:23:10,630 | INFO     | fitting pss+swap vs Time
[2025-12-14 12:24:08] 2025-12-14 17:23:10,630 | INFO     | sum of square deviations: 66959395.0
[2025-12-14 12:24:08] 2025-12-14 17:23:10,630 | INFO     | sum of deviations: 1724234418.0
[2025-12-14 12:24:08] 2025-12-14 17:23:10,630 | INFO     | mean x: 1765731029.5
[2025-12-14 12:24:08] 2025-12-14 17:23:10,630 | INFO     | mean y: 2693048.4
[2025-12-14 12:24:08] 2025-12-14 17:23:10,630 | INFO     | intersect: -45465671980.801254
[2025-12-14 12:24:08] 2025-12-14 17:23:10,631 | INFO     | chi2: 0.043247918480584756
[2025-12-14 12:24:08] 2025-12-14 17:23:10,631 | INFO     | current memory leak: 25.75 B/s (using 60 data points, chi2=0.04)
[2025-12-14 12:24:08] 2025-12-14 17:23:10,631 | INFO     | could have reported an average CPU frequency of 2215 MHz (6 samples)
[2025-12-14 12:24:08] 2025-12-14 17:23:10,631 | INFO     | ..............................
[2025-12-14 12:24:08] 2025-12-14 17:23:10,631 | INFO     | . Timing measurements:
[2025-12-14 12:24:08] 2025-12-14 17:23:10,631 | INFO     | . get job = 0 s
[2025-12-14 12:24:08] 2025-12-14 17:23:10,631 | INFO     | . initial setup = 2 s
[2025-12-14 12:24:08] 2025-12-14 17:23:10,631 | INFO     | . payload setup = 7 s
[2025-12-14 12:24:08] 2025-12-14 17:23:10,632 | INFO     | . stage-in = 0 s
[2025-12-14 12:24:08] 2025-12-14 17:23:10,632 | INFO     | . payload execution = 4059 s
[2025-12-14 12:24:08] 2025-12-14 17:23:10,632 | INFO     | . stage-out = 0 s
[2025-12-14 12:24:08] 2025-12-14 17:23:10,632 | INFO     | . log creation = 0 s
[2025-12-14 12:24:08] 2025-12-14 17:23:10,632 | INFO     | ..............................
[2025-12-14 12:24:08] 2025-12-14 17:23:10,710 | INFO     | 
[2025-12-14 12:24:08] 2025-12-14 17:23:10,710 | INFO     | job summary report
[2025-12-14 12:24:08] 2025-12-14 17:23:10,710 | INFO     | --------------------------------------------------
[2025-12-14 12:24:08] 2025-12-14 17:23:10,710 | INFO     | PanDA job id: 6929448996
[2025-12-14 12:24:08] 2025-12-14 17:23:10,710 | INFO     | task id: 47886933
[2025-12-14 12:24:08] 2025-12-14 17:23:10,711 | INFO     | errors: (none)
[2025-12-14 12:24:08] 2025-12-14 17:23:10,711 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 12:24:08] 2025-12-14 17:23:10,711 | INFO     | pilot state: finished 
[2025-12-14 12:24:08] 2025-12-14 17:23:10,711 | INFO     | transexitcode: 0
[2025-12-14 12:24:08] 2025-12-14 17:23:10,711 | INFO     | exeerrorcode: 0
[2025-12-14 12:24:08] 2025-12-14 17:23:10,711 | INFO     | exeerrordiag: 
[2025-12-14 12:24:08] 2025-12-14 17:23:10,712 | INFO     | exitcode: 0
[2025-12-14 12:24:08] 2025-12-14 17:23:10,712 | INFO     | exitmsg: OK
[2025-12-14 12:24:08] 2025-12-14 17:23:10,712 | INFO     | cpuconsumptiontime: 43762 s
[2025-12-14 12:24:08] 2025-12-14 17:23:10,712 | INFO     | nevents: 400
[2025-12-14 12:24:08] 2025-12-14 17:23:10,712 | INFO     | neventsw: 0
[2025-12-14 12:24:08] 2025-12-14 17:23:10,712 | INFO     | pid: 14814
[2025-12-14 12:24:08] 2025-12-14 17:23:10,712 | INFO     | pgrp: 14814
[2025-12-14 12:24:08] 2025-12-14 17:23:10,713 | INFO     | corecount: 12
[2025-12-14 12:24:08] 2025-12-14 17:23:10,713 | INFO     | event service: False
[2025-12-14 12:24:08] 2025-12-14 17:23:10,713 | INFO     | sizes: {0: 2283964, 5: 2284226, 11: 2284282, 4069: 2310113, 4070: 2310112, 4071: 2319166, 4072: 2319350, 4078: 2319544}
[2025-12-14 12:24:08] 2025-12-14 17:23:10,713 | INFO     | --------------------------------------------------
[2025-12-14 12:24:08] 2025-12-14 17:23:10,713 | INFO     | 
[2025-12-14 12:24:08] 2025-12-14 17:23:10,713 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 12:24:08] 2025-12-14 17:23:10,738 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,739 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,739 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,739 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,739 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,739 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,739 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,740 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,740 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,740 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,740 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,740 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,740 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,741 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,741 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,741 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,741 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,741 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 12:24:08] 2025-12-14 17:23:10,742 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,742 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 12:24:08] 2025-12-14 17:23:10,742 | INFO     | job 6929448996 has completed (purged errors)
[2025-12-14 12:24:08] 2025-12-14 17:23:10,742 | INFO     | overall cleanup function is called
[2025-12-14 12:24:08] 2025-12-14 17:23:11,750 | INFO     | --- collectZombieJob: --- 10, [14814]
[2025-12-14 12:24:08] 2025-12-14 17:23:11,750 | INFO     | zombie collector waiting for pid 14814
[2025-12-14 12:24:08] 2025-12-14 17:23:11,750 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 12:24:08] 2025-12-14 17:23:11,751 | INFO     | collected zombie processes
[2025-12-14 12:24:08] 2025-12-14 17:23:11,751 | INFO     | will attempt to kill all subprocesses of pid=14814
[2025-12-14 12:24:08] 2025-12-14 17:23:11,841 | INFO     | process IDs to be killed: [14814] (in reverse order)
[2025-12-14 12:24:08] 2025-12-14 17:23:11,891 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 12:24:08] 2025-12-14 17:23:11,891 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 12:24:08] 2025-12-14 17:23:11,895 | INFO     | did not find any defunct processes belonging to 14814
[2025-12-14 12:24:08] 2025-12-14 17:23:11,899 | INFO     | did not find any defunct processes belonging to 14814
[2025-12-14 12:24:08] 2025-12-14 17:23:11,899 | INFO     | ready for new job
[2025-12-14 12:24:08] 2025-12-14 17:23:11,899 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 12:24:08] 2025-12-14 17:23:11,900 | INFO     | ***************************************
[2025-12-14 12:24:08] 2025-12-14 17:23:11,900 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 12:24:08] 2025-12-14 17:23:11,900 | INFO     | ***************************************
[2025-12-14 12:24:08] 2025-12-14 17:23:11,900 | INFO     | 
[2025-12-14 12:24:08] 2025-12-14 17:23:11,901 | INFO     | architecture information:
[2025-12-14 12:24:08] 2025-12-14 17:23:11,901 | INFO     | executing command: cat /etc/os-release
[2025-12-14 12:24:08] 2025-12-14 17:23:11,916 | INFO     | cat /etc/os-release:
[2025-12-14 12:24:08] NAME="CentOS Linux"
[2025-12-14 12:24:08] VERSION="7 (Core)"
[2025-12-14 12:24:08] ID="centos"
[2025-12-14 12:24:08] ID_LIKE="rhel fedora"
[2025-12-14 12:24:08] VERSION_ID="7"
[2025-12-14 12:24:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 12:24:08] ANSI_COLOR="0;31"
[2025-12-14 12:24:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 12:24:08] HOME_URL="https://www.centos.org/"
[2025-12-14 12:24:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 12:24:08] 
[2025-12-14 12:24:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 12:24:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 12:24:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 12:24:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 12:24:08] 
[2025-12-14 12:24:08] 2025-12-14 17:23:11,917 | INFO     | ***************************************
[2025-12-14 12:24:08] 2025-12-14 17:23:12,420 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 12:24:08] 2025-12-14 17:23:12,437 | INFO     | sufficient remaining disk space (18683527168 B)
[2025-12-14 12:24:08] 2025-12-14 17:23:12,438 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 12:24:08] 2025-12-14 17:23:12,438 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 12:24:08] 2025-12-14 17:23:12,438 | INFO     | update_server=False
[2025-12-14 12:24:08] 2025-12-14 17:23:12,438 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 12:24:08] 2025-12-14 17:23:12,438 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 12:24:08] 2025-12-14 17:23:12,439 | INFO     | aborting loop
[2025-12-14 12:24:08] 2025-12-14 17:23:12,439 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 12:24:08] 2025-12-14 17:23:12,439 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 12:24:08] 2025-12-14 17:23:13,053 | INFO     | all payload control threads have been joined
[2025-12-14 12:24:08] 2025-12-14 17:23:13,259 | INFO     | all job control threads have been joined
[2025-12-14 12:24:08] 2025-12-14 17:23:13,352 | INFO     | all data control threads have been joined
[2025-12-14 12:24:08] 2025-12-14 17:23:13,444 | INFO     | [job] retrieve thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:13,444 | INFO     | [job] job monitor thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:13,445 | INFO     | [job] queue monitor thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:13,491 | INFO     | [data] copytool_in thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:13,770 | INFO     | [payload] failed_post thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:13,792 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:14,059 | INFO     | [payload] control thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:14,264 | INFO     | [job] control thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:14,348 | INFO     | [job] validate thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:14,357 | INFO     | [data] control thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:14,365 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:14,419 | INFO     | [payload] validate_post thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:14,445 | INFO     | [data] copytool_out thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:14,692 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:14,755 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:14,788 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 12:24:08] 2025-12-14 17:23:18,794 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 12:24:08] 2025-12-14 17:23:42,106 | INFO     | PID=8220 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-14 12:24:08] 2025-12-14 17:23:42,106 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 12:24:08] 2025-12-14 17:23:42,106 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 12:24:08] 2025-12-14 17:23:42,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 12:24:08] 2025-12-14 17:24:02,292 | INFO     | [monitor] cgroup control has ended
[2025-12-14 12:24:08] 2025-12-14 17:24:03,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140042019899200)>', '<ExcThread(monitor, started 140041191925504)>']
[2025-12-14 12:24:08] 2025-12-14 17:24:04,217 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 12:24:08] 2025-12-14 17:24:04,217 | INFO     | [monitor] control thread has ended
[2025-12-14 12:24:08] 2025-12-14 17:24:08,316 | INFO     | all workflow threads have been joined
[2025-12-14 12:24:08] 2025-12-14 17:24:08,316 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 12:24:08] 2025-12-14 17:24:08,317 | INFO     | traces error code: 0
[2025-12-14 12:24:08] 2025-12-14 17:24:08,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 12:24:08] 2025-12-14 17:24:08,403 [wrapper] ==== pilot stdout END ====
[2025-12-14 12:24:08] 2025-12-14 17:24:08,408 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 12:24:08] 2025-12-14 17:24:08,412 [wrapper] pilotpid: 8220
[2025-12-14 12:24:08] 2025-12-14 17:24:08,415 [wrapper] Pilot exit status: 0
[2025-12-14 12:24:08] 2025-12-14 17:24:08,430 [wrapper] pandaids: 6929448996
[2025-12-14 12:24:08] 2025-12-14 17:24:08,476 [wrapper] cleanup supervisor_pilot 10130 8221
[2025-12-14 12:24:08] 2025-12-14 17:24:08,479 [wrapper] Test setup, not cleaning
[2025-12-14 12:24:08] 2025-12-14 17:24:08,483 [wrapper] apfmon messages muted
[2025-12-14 12:24:08] 2025-12-14 17:24:08,487 [wrapper] ==== wrapper stdout END ====
[2025-12-14 12:24:08] 2025-12-14 17:24:08,491 [wrapper] ==== wrapper stderr END ====
[2025-12-14 12:24:08]  *** Error codes and diagnostics ***
[2025-12-14 12:24:08]     "exeErrorCode": 0,
[2025-12-14 12:24:08]     "exeErrorDiag": "",
[2025-12-14 12:24:08]     "pilotErrorCode": 0,
[2025-12-14 12:24:08]     "pilotErrorDiag": "",
[2025-12-14 12:24:08]  *** Listing of results directory ***
[2025-12-14 12:24:08] total 329440
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas    579449 Dec 14 06:00 pilot3.tar.gz
[2025-12-14 12:24:08] -rwx------ 1 boincer umatlas     36322 Dec 14 06:03 runpilot2-wrapper.sh
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas      5112 Dec 14 06:03 queuedata.json
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas       100 Dec 14 11:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 12:24:08] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 11:14 run_atlas
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas       105 Dec 14 11:14 job.xml
[2025-12-14 12:24:08] -rw-r--r-- 2 boincer umatlas 190998707 Dec 14 11:14 EVNT.47886929._000103.pool.root.1
[2025-12-14 12:24:08] drwxrwx--x 2 boincer umatlas      4096 Dec 14 11:14 shared
[2025-12-14 12:24:08] -rw-r--r-- 2 boincer umatlas    592402 Dec 14 11:14 input.tar.gz
[2025-12-14 12:24:08] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 11:14 start_atlas.sh
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas         0 Dec 14 11:14 boinc_lockfile
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas      2513 Dec 14 11:14 pandaJob.out
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas        57 Dec 14 11:14 setup.sh.local
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas    991032 Dec 14 11:14 agis_schedconf.cvmfs.json
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas   1516240 Dec 14 11:14 agis_ddmendpoints.agis.ALL.json
[2025-12-14 12:24:08] drwx------ 5 boincer umatlas      4096 Dec 14 11:14 pilot3
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas      5953 Dec 14 12:20 init_data.xml
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas 140483292 Dec 14 12:22 HITS.47886933._002875.pool.root.1
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas       529 Dec 14 12:22 boinc_task_state.xml
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas        95 Dec 14 12:22 pilot_heartbeat.json
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas      1045 Dec 14 12:22 memory_monitor_summary.json
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas    372942 Dec 14 12:23 log.47886933._002875.job.log.tgz.1
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas      7842 Dec 14 12:23 heartbeat.json
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 12:24 boinc_mmap_file
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas        27 Dec 14 12:24 wrapper_checkpoint.txt
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas      4745 Dec 14 12:24 pilotlog.txt
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas    598824 Dec 14 12:24 log.47886933._002875.job.log.1
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas       357 Dec 14 12:24 output.list
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas       620 Dec 14 12:24 runtime_log
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas    993280 Dec 14 12:24 result.tar.gz
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas      9344 Dec 14 12:24 runtime_log.err
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas       660 Dec 14 12:24 QzNODmr3yo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5TVKDmx9VTbn.diag
[2025-12-14 12:24:08] -rw-r--r-- 1 boincer umatlas     21590 Dec 14 12:24 stderr.txt
[2025-12-14 12:24:08] HITS file was successfully produced:
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas 140483292 Dec 14 12:22 shared/HITS.pool.root.1
[2025-12-14 12:24:08]  *** Contents of shared directory: ***
[2025-12-14 12:24:08] total 325288
[2025-12-14 12:24:08] -rw-r--r-- 2 boincer umatlas 190998707 Dec 14 11:14 ATLAS.root_0
[2025-12-14 12:24:08] -rw-r--r-- 2 boincer umatlas    592402 Dec 14 11:14 input.tar.gz
[2025-12-14 12:24:08] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 11:14 start_atlas.sh
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas 140483292 Dec 14 12:22 HITS.pool.root.1
[2025-12-14 12:24:08] -rw------- 1 boincer umatlas    993280 Dec 14 12:24 result.tar.gz
12:24:09 (4474): run_atlas exited; CPU time 43723.964102
12:24:09 (4474): called boinc_finish(0)

</stderr_txt>
]]>

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