Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:52:13 (218766): wrapper (7.7.26015): starting
10:52:13 (218766): wrapper: running run_atlas (--nthreads 10)
[2025-12-14 10:52:13] Arguments: --nthreads 10
[2025-12-14 10:52:13] Threads: 10
[2025-12-14 10:52:13] Checking for CVMFS
[2025-12-14 10:52:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 10:52:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 10:52:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 10:52:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 10:52:15] 2.13.3.0 14106 56125 132576 154000 2 260 32579120 40960000 25197 16776704 0 773720463 99.737 526847458 45711 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-14 10:52:15] CVMFS is ok
[2025-12-14 10:52:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 10:52:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 10:52:15] Further information can be found at the LHC@home message board.
[2025-12-14 10:52:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 10:52:15] Checking for apptainer binary...
[2025-12-14 10:52:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 10:52:15] Running /usr/bin/apptainer --version
[2025-12-14 10:52:15] apptainer version 1.4.5-2.el9
[2025-12-14 10:52:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 10:52:15] c8-7-5.aglt2.org
[2025-12-14 10:52:15] apptainer works
[2025-12-14 10:52:15] Set ATHENA_PROC_NUMBER=10
[2025-12-14 10:52:15] Set ATHENA_CORE_NUMBER=10
[2025-12-14 10:52:15] Starting ATLAS job with PandaID=6929411762
[2025-12-14 10:52:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 12:00:43]  *** The last 200 lines of the pilot log: ***
[2025-12-14 12:00:43] 2025-12-14 16:59:38,467 | INFO     | this job has now completed (state=finished)
[2025-12-14 12:00:43] 2025-12-14 16:59:38,467 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 12:00:43] 2025-12-14 16:59:38,467 | INFO     | log transfer has been attempted: DONE
[2025-12-14 12:00:43] 2025-12-14 16:59:38,467 | INFO     | job 6929411762 has finished - writing final server update
[2025-12-14 12:00:43] 2025-12-14 16:59:38,468 | INFO     | total number of processed events: 400 (read)
[2025-12-14 12:00:43] 2025-12-14 16:59:38,480 | INFO     | executing command: lscpu
[2025-12-14 12:00:43] 2025-12-14 16:59:38,691 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 12:00:43] 2025-12-14 16:59:38,792 | INFO     | time since job start (3969s) is within the limit (174528.0s)
[2025-12-14 12:00:43] 2025-12-14 16:59:41,401 | WARNING  | process 248185 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 12:00:43] 2025-12-14 16:59:41,423 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929411762/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 12:00:43] 2025-12-14 16:59:42,931 | INFO     | PID=230802 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 12:00:43] 2025-12-14 16:59:42,931 | INFO     | .. there are 26 such processes running
[2025-12-14 12:00:43] 2025-12-14 16:59:43,117 | INFO     | number of running child processes to parent process 248185: 1
[2025-12-14 12:00:43] 2025-12-14 16:59:43,117 | INFO     | maximum number of monitored processes: 6
[2025-12-14 12:00:43] 2025-12-14 16:59:43,940 | INFO     | time since job start (3974s) is within the limit (174528.0s)
[2025-12-14 12:00:43] 2025-12-14 16:59:45,624 | INFO     | monitor loop #277: job 0:6929411762 is in state 'finished'
[2025-12-14 12:00:43] 2025-12-14 16:59:45,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 12:00:43] 2025-12-14 16:59:45,947 | INFO     | time since job start (3976s) is within the limit (174528.0s)
[2025-12-14 12:00:43] 2025-12-14 16:59:47,969 | INFO     | time since job start (3978s) is within the limit (174528.0s)
[2025-12-14 12:00:43] 2025-12-14 16:59:48,129 | INFO     | monitor loop #278: job 0:6929411762 is in state 'finished'
[2025-12-14 12:00:43] 2025-12-14 16:59:48,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 12:00:43] 2025-12-14 16:59:49,977 | INFO     | time since job start (3980s) is within the limit (174528.0s)
[2025-12-14 12:00:43] 2025-12-14 16:59:50,634 | INFO     | monitor loop #279: job 0:6929411762 is in state 'finished'
[2025-12-14 12:00:43] 2025-12-14 16:59:50,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 12:00:43] 2025-12-14 16:59:51,983 | INFO     | time since job start (3982s) is within the limit (174528.0s)
[2025-12-14 12:00:43] 2025-12-14 16:59:53,141 | INFO     | monitor loop #280: job 0:6929411762 is in state 'finished'
[2025-12-14 12:00:43] 2025-12-14 16:59:53,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 12:00:43] 2025-12-14 16:59:53,992 | INFO     | time since job start (3984s) is within the limit (174528.0s)
[2025-12-14 12:00:43] 2025-12-14 16:59:55,646 | INFO     | monitor loop #281: job 0:6929411762 is in state 'finished'
[2025-12-14 12:00:43] 2025-12-14 16:59:55,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 12:00:43] 2025-12-14 16:59:55,998 | INFO     | time since job start (3986s) is within the limit (174528.0s)
[2025-12-14 12:00:43] 2025-12-14 16:59:58,009 | INFO     | time since job start (3989s) is within the limit (174528.0s)
[2025-12-14 12:00:43] 2025-12-14 16:59:58,151 | INFO     | monitor loop #282: job 0:6929411762 is in state 'finished'
[2025-12-14 12:00:43] 2025-12-14 16:59:58,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 12:00:43] 2025-12-14 17:00:00,016 | INFO     | time since job start (3991s) is within the limit (174528.0s)
[2025-12-14 12:00:43] 2025-12-14 17:00:00,655 | INFO     | monitor loop #283: job 0:6929411762 is in state 'finished'
[2025-12-14 12:00:43] 2025-12-14 17:00:00,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 12:00:43] 2025-12-14 17:00:02,023 | INFO     | time since job start (3993s) is within the limit (174528.0s)
[2025-12-14 12:00:43] 2025-12-14 17:00:02,308 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-14 12:00:43] 2025-12-14 17:00:02,316 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3790.098789062501
[2025-12-14 12:00:43] 2025-12-14 17:00:02,361 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929411762/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 12:00:43] 2025-12-14 17:00:02,361 | INFO     | extracted standard info from prmon json
[2025-12-14 12:00:43] 2025-12-14 17:00:02,361 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 12:00:43] 2025-12-14 17:00:02,361 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 12:00:43] 2025-12-14 17:00:02,361 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 12:00:43] 2025-12-14 17:00:02,361 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 12:00:43] 2025-12-14 17:00:02,362 | INFO     | fitting pss+swap vs Time
[2025-12-14 12:00:43] 2025-12-14 17:00:02,362 | INFO     | sum of square deviations: 54447266.214285694
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | sum of deviations: 146595449.71428585
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | mean x: 1765729725.6785715
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | mean y: 2582754.4285714286
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | intersect: -4751520825.189116
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | chi2: 0.06737383299470827
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | current memory leak: 2.69 B/s (using 56 data points, chi2=0.07)
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | could have reported an average CPU frequency of 3759 MHz (6 samples)
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | ..............................
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | . Timing measurements:
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | . get job = 0 s
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | . initial setup = 5 s
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | . payload setup = 45 s
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | . stage-in = 0 s
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | . payload execution = 3857 s
[2025-12-14 12:00:43] 2025-12-14 17:00:02,363 | INFO     | . stage-out = 1 s
[2025-12-14 12:00:43] 2025-12-14 17:00:02,385 | INFO     | . log creation = 0 s
[2025-12-14 12:00:43] 2025-12-14 17:00:02,385 | INFO     | ..............................
[2025-12-14 12:00:43] 2025-12-14 17:00:02,604 | INFO     | 
[2025-12-14 12:00:43] 2025-12-14 17:00:02,604 | INFO     | job summary report
[2025-12-14 12:00:43] 2025-12-14 17:00:02,604 | INFO     | --------------------------------------------------
[2025-12-14 12:00:43] 2025-12-14 17:00:02,604 | INFO     | PanDA job id: 6929411762
[2025-12-14 12:00:43] 2025-12-14 17:00:02,604 | INFO     | task id: 47886831
[2025-12-14 12:00:43] 2025-12-14 17:00:02,604 | INFO     | errors: (none)
[2025-12-14 12:00:43] 2025-12-14 17:00:02,604 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 12:00:43] 2025-12-14 17:00:02,604 | INFO     | pilot state: finished 
[2025-12-14 12:00:43] 2025-12-14 17:00:02,604 | INFO     | transexitcode: 0
[2025-12-14 12:00:43] 2025-12-14 17:00:02,604 | INFO     | exeerrorcode: 0
[2025-12-14 12:00:43] 2025-12-14 17:00:02,604 | INFO     | exeerrordiag: 
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | exitcode: 0
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | exitmsg: OK
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | cpuconsumptiontime: 25057 s
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | nevents: 400
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | neventsw: 0
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | pid: 248185
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | pgrp: 248185
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | corecount: 10
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | event service: False
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | sizes: {0: 2283819, 1: 2284018, 12: 2284018, 22: 2284046, 31: 2284336, 33: 2284364, 3907: 2310380, 3908: 2319378, 3909: 2319434, 3933: 2319628}
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | --------------------------------------------------
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | 
[2025-12-14 12:00:43] 2025-12-14 17:00:02,605 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,638 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,639 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 12:00:43] 2025-12-14 17:00:02,639 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,639 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 12:00:43] 2025-12-14 17:00:02,639 | INFO     | job 6929411762 has completed (purged errors)
[2025-12-14 12:00:43] 2025-12-14 17:00:02,639 | INFO     | overall cleanup function is called
[2025-12-14 12:00:43] 2025-12-14 17:00:03,651 | INFO     | --- collectZombieJob: --- 10, [248185]
[2025-12-14 12:00:43] 2025-12-14 17:00:03,651 | INFO     | zombie collector waiting for pid 248185
[2025-12-14 12:00:43] 2025-12-14 17:00:03,651 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 12:00:43] 2025-12-14 17:00:03,651 | INFO     | collected zombie processes
[2025-12-14 12:00:43] 2025-12-14 17:00:03,651 | INFO     | will attempt to kill all subprocesses of pid=248185
[2025-12-14 12:00:43] 2025-12-14 17:00:04,380 | INFO     | process IDs to be killed: [248185] (in reverse order)
[2025-12-14 12:00:43] 2025-12-14 17:00:04,535 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 12:00:43] 2025-12-14 17:00:04,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 12:00:43] 2025-12-14 17:00:04,560 | INFO     | did not find any defunct processes belonging to 248185
[2025-12-14 12:00:43] 2025-12-14 17:00:04,599 | INFO     | did not find any defunct processes belonging to 248185
[2025-12-14 12:00:43] 2025-12-14 17:00:04,600 | INFO     | ready for new job
[2025-12-14 12:00:43] 2025-12-14 17:00:04,600 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 12:00:43] 2025-12-14 17:00:04,601 | INFO     | ***************************************
[2025-12-14 12:00:43] 2025-12-14 17:00:04,601 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 12:00:43] 2025-12-14 17:00:04,601 | INFO     | ***************************************
[2025-12-14 12:00:43] 2025-12-14 17:00:04,601 | INFO     | 
[2025-12-14 12:00:43] 2025-12-14 17:00:04,610 | INFO     | architecture information:
[2025-12-14 12:00:43] 2025-12-14 17:00:04,615 | INFO     | executing command: cat /etc/os-release
[2025-12-14 12:00:43] 2025-12-14 17:00:04,627 | INFO     | cat /etc/os-release:
[2025-12-14 12:00:43] NAME="CentOS Linux"
[2025-12-14 12:00:43] VERSION="7 (Core)"
[2025-12-14 12:00:43] ID="centos"
[2025-12-14 12:00:43] ID_LIKE="rhel fedora"
[2025-12-14 12:00:43] VERSION_ID="7"
[2025-12-14 12:00:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 12:00:43] ANSI_COLOR="0;31"
[2025-12-14 12:00:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 12:00:43] HOME_URL="https://www.centos.org/"
[2025-12-14 12:00:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 12:00:43] 
[2025-12-14 12:00:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 12:00:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 12:00:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 12:00:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 12:00:43] 
[2025-12-14 12:00:43] 2025-12-14 17:00:04,627 | INFO     | ***************************************
[2025-12-14 12:00:43] 2025-12-14 17:00:05,131 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 12:00:43] 2025-12-14 17:00:05,146 | INFO     | sufficient remaining disk space (170116775936 B)
[2025-12-14 12:00:43] 2025-12-14 17:00:05,146 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 12:00:43] 2025-12-14 17:00:05,146 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 12:00:43] 2025-12-14 17:00:05,146 | INFO     | update_server=False
[2025-12-14 12:00:43] 2025-12-14 17:00:05,146 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 12:00:43] 2025-12-14 17:00:05,146 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 12:00:43] 2025-12-14 17:00:05,146 | INFO     | aborting loop
[2025-12-14 12:00:43] 2025-12-14 17:00:05,260 | INFO     | all job control threads have been joined
[2025-12-14 12:00:43] 2025-12-14 17:00:05,886 | INFO     | all payload control threads have been joined
[2025-12-14 12:00:43] 2025-12-14 17:00:06,090 | INFO     | all data control threads have been joined
[2025-12-14 12:00:43] 2025-12-14 17:00:06,152 | INFO     | [job] retrieve thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:06,152 | INFO     | [job] job monitor thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:06,228 | INFO     | [payload] failed_post thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:06,265 | INFO     | [job] control thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:06,481 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 12:00:43] 2025-12-14 17:00:06,532 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:06,745 | INFO     | [job] validate thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:06,797 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:06,898 | INFO     | [payload] control thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:06,972 | INFO     | [payload] validate_post thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:07,086 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:07,094 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 12:00:43] 2025-12-14 17:00:07,096 | INFO     | [data] control thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:07,105 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:07,325 | INFO     | [data] copytool_in thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:07,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 12:00:43] 2025-12-14 17:00:08,489 | INFO     | [data] copytool_out thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:08,627 | INFO     | [job] queue monitor thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:11,103 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 12:00:43] 2025-12-14 17:00:35,080 | INFO     | [monitor] cgroup control has ended
[2025-12-14 12:00:43] 2025-12-14 17:00:36,388 | INFO     | PID=230802 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-14 12:00:43] 2025-12-14 17:00:36,388 | INFO     | .. there are 26 such processes running
[2025-12-14 12:00:43] 2025-12-14 17:00:36,388 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 12:00:43] 2025-12-14 17:00:36,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 12:00:43] 2025-12-14 17:00:36,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 12:00:43] 2025-12-14 17:00:36,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140702466455360)>', '<ExcThread(monitor, started 140701845153536)>']
[2025-12-14 12:00:43] 2025-12-14 17:00:37,395 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 12:00:43] 2025-12-14 17:00:37,395 | INFO     | [monitor] control thread has ended
[2025-12-14 12:00:43] 2025-12-14 17:00:41,861 | INFO     | all workflow threads have been joined
[2025-12-14 12:00:43] 2025-12-14 17:00:41,861 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 12:00:43] 2025-12-14 17:00:41,861 | INFO     | traces error code: 0
[2025-12-14 12:00:43] 2025-12-14 17:00:41,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 12:00:43] 2025-12-14 17:00:42,116 [wrapper] ==== pilot stdout END ====
[2025-12-14 12:00:43] 2025-12-14 17:00:42,146 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 12:00:43] 2025-12-14 17:00:42,194 [wrapper] pilotpid: 230802
[2025-12-14 12:00:43] 2025-12-14 17:00:42,242 [wrapper] Pilot exit status: 0
[2025-12-14 12:00:43] 2025-12-14 17:00:42,322 [wrapper] pandaids: 6929411762
[2025-12-14 12:00:43] 2025-12-14 17:00:42,534 [wrapper] cleanup supervisor_pilot  851734 230803
[2025-12-14 12:00:43] 2025-12-14 17:00:42,566 [wrapper] Test setup, not cleaning
[2025-12-14 12:00:43] 2025-12-14 17:00:42,595 [wrapper] apfmon messages muted
[2025-12-14 12:00:43] 2025-12-14 17:00:42,620 [wrapper] ==== wrapper stdout END ====
[2025-12-14 12:00:43] 2025-12-14 17:00:42,633 [wrapper] ==== wrapper stderr END ====
[2025-12-14 12:00:43]  *** Error codes and diagnostics ***
[2025-12-14 12:00:43]     "exeErrorCode": 0,
[2025-12-14 12:00:43]     "exeErrorDiag": "",
[2025-12-14 12:00:43]     "pilotErrorCode": 0,
[2025-12-14 12:00:43]     "pilotErrorDiag": "",
[2025-12-14 12:00:43]  *** Listing of results directory ***
[2025-12-14 12:00:43] total 337352
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 23:46 pilot3.tar.gz
[2025-12-14 12:00:43] -rwx------. 1 boincer umatlas     36322 Dec 13 23:46 runpilot2-wrapper.sh
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 23:46 queuedata.json
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas       100 Dec 14 10:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 12:00:43] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 14 10:52 run_atlas
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas       105 Dec 14 10:52 job.xml
[2025-12-14 12:00:43] -rw-r--r--. 2 boincer umatlas 190095261 Dec 14 10:52 EVNT.47886829._000253.pool.root.1
[2025-12-14 12:00:43] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 10:52 start_atlas.sh
[2025-12-14 12:00:43] drwxrwx--x. 2 boincer umatlas      4096 Dec 14 10:52 shared
[2025-12-14 12:00:43] -rw-r--r--. 2 boincer umatlas    592410 Dec 14 10:52 input.tar.gz
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas         0 Dec 14 10:52 boinc_lockfile
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas      2538 Dec 14 10:52 pandaJob.out
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas        57 Dec 14 10:52 setup.sh.local
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas    991032 Dec 14 10:53 agis_schedconf.cvmfs.json
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas   1516240 Dec 14 10:53 agis_ddmendpoints.agis.ALL.json
[2025-12-14 12:00:43] drwx------. 5 boincer umatlas      4096 Dec 14 10:53 pilot3
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas      7172 Dec 14 11:56 init_data.xml
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas 149596337 Dec 14 11:59 HITS.47886831._006380.pool.root.1
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas       530 Dec 14 11:59 boinc_task_state.xml
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas      1034 Dec 14 11:59 memory_monitor_summary.json
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas    349974 Dec 14 11:59 log.47886831._006380.job.log.tgz.1
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas        95 Dec 14 11:59 pilot_heartbeat.json
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas      7776 Dec 14 12:00 heartbeat.json
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 12:00 boinc_mmap_file
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas        27 Dec 14 12:00 wrapper_checkpoint.txt
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas      4824 Dec 14 12:00 pilotlog.txt
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas    567980 Dec 14 12:00 log.47886831._006380.job.log.1
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas       357 Dec 14 12:00 output.list
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas       620 Dec 14 12:00 runtime_log
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas    942080 Dec 14 12:00 result.tar.gz
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas      9334 Dec 14 12:00 runtime_log.err
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas       650 Dec 14 12:00 gDvKDmtAto8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3kUKDmZjUbcn.diag
[2025-12-14 12:00:43] -rw-r--r--. 1 boincer umatlas     22407 Dec 14 12:00 stderr.txt
[2025-12-14 12:00:43] HITS file was successfully produced:
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas 149596337 Dec 14 11:59 shared/HITS.pool.root.1
[2025-12-14 12:00:43]  *** Contents of shared directory: ***
[2025-12-14 12:00:43] total 333256
[2025-12-14 12:00:43] -rw-r--r--. 2 boincer umatlas 190095261 Dec 14 10:52 ATLAS.root_0
[2025-12-14 12:00:43] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 10:52 start_atlas.sh
[2025-12-14 12:00:43] -rw-r--r--. 2 boincer umatlas    592410 Dec 14 10:52 input.tar.gz
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas 149596337 Dec 14 11:59 HITS.pool.root.1
[2025-12-14 12:00:43] -rw-------. 1 boincer umatlas    942080 Dec 14 12:00 result.tar.gz
12:00:45 (218766): run_atlas exited; CPU time 25173.186502
12:00:45 (218766): called boinc_finish(0)

</stderr_txt>
]]>

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